Ss1.1-Lng1-LNG010102H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTCGTGGAAAGAAGAAGCATAGCAGAGAAGAAAGGCAGACTCAAGGCATTCAACCTC TGCCACCATGGGGAACTGGGCTGTGAATGAGGGCCTCTCCATCTTTGTCATCCTGGTATG GCTGGGGTTGAACGTCTTCCTCTTTGTCCACTATTACCTGCTGTATGATACGTCAAAAGA GTACATTTACACTCGAAAACTTCTTGGGTCTGCGCTGGCACTGGCCAGGGCCCCTGCCGC CTGCCTGAATTTCAACTGCATGCTGATTCTGCTGCCGGTCTGTCGAAACCTGCTCTCCTT CCTTAGGGGTTCCAGTGCGTGCTGCTCAACAAGAATTCGAAGACAGCTGGACAGGAACCT CACCTTTCATAAAATGGTGGCGTGGATGATTGCACTTCACACCACGATTCACACCATTGC CCATCTGTTTAATGTGGAATGGTGTGTGAACGCCCGAGTCAACAATTCTGACCCGTACTC AATAGCACTCTCTGACATAGGAGATAAGCCTAATGAAACGTACCTCAATTTCGTTCGACA GAGAATCAAGAATCCTGAAGGAGGCCTGTACGTGGCTGTGACTCGGCTGGCAGGCATCAC AGGCGTCGTCATCACGCTGTGTCTCATATTAATTATCACCTCCTCCACCAAGACCATCCG GAGGTCTTACTTCGAGGTGTTCTGGTACACACACCATCTCTTTGTGATCTTCTTCATTGG CCTCGCCATCCATGGAGCCGAGCGAATTGTACGTAGGCAGACCCCAAAGAGTTTGTTGGT CCACGATCCAAAGGCATGTGCTCAAAACATCTCACAATGGGGAAAAATAAAGGACTGCCC GATCCCGGAGTTCGCAGGGAACCCTCCTATGACTTGGAAATGGATCGTGGGTCCCATGTT CCTGTATCTGTGTGAGAGGCTGGTGCGGTTTTGGCGATCTCAGCAGAAGGTGGTCATTAC CAAGGTGGTCACTCATCCTTTCAAAACCATCGAGCTACAGATGAAGAAGAAGGGATTCAG GATGGAGGTGGGACAATACATTTTCGTCAAGTGTCCCGCAGTGTCCAAGCTGGAGTGGCA CCCTTTCACCCTGACCTCTGCCCCTGAGGAAGACTTCTTTAGCATCCATATCCGCATTGT TGGCGACTGGACAGAGGGACTGTTCAAAGCCTGTGGCTGTGATAAGCAGGAGTTTCAAGA TGCCTGGAAACTACCTAAGATCGCTGTGGACGGGCCCTTCGGCACCGCCAGTGAAGACGT GTTCAGTTACGAGGTGGTCATGTTAGTGGGAGCAGGGATTGGGGTCACGCCCTTCGCCTC CATTCTCAAGTCGGTCTGGTACAAGTATTGCAATAATGCCACCAATCTGAGGCTCAAAAA GATCTACTTCTACTGGCTGTGCCGGGACACACATGCCTTCGAGTGGTTTGCCGACCTGCT GCAGCTGCTGGAGACCCAGATGCAGGAGAGGAACAACGCCGGCTTCCTCAGCTACAACAT CTACCTCACTGGCTGGGATGAGTCACAGGCCAATCACTTTGCCGTGCACCATGATGAGGA GAAAGATGTGATCACAGGCCTGAAGCAAAAGACCTTGTACGGACGGCCCAACTGGGATAA CGAGTTCAAGACCATTGCAAGTCAACACCCCACTACCAGAATAGGAGTTTTCCTCTGCGG ACCGGAAGCCTTGGCTGAAACCCTCAATAAGCAGTGCATCTCCAACTCCGACTCCAGCCC GAGGGGAGTGCATTTCATTTTCAATAAGGAAAACTTCTAACCGGTCTCATCCACGAGGAA ATAAATGTGGGTCGTACTGCCAAATGCCCAGATAATGCCAGTTGATAATAGAAGTTCCTT CCTTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTCGTGGAAAGAAGAAGCATAGCAGAGAAGAAAGGCAGACTCAAGGCATTCAACCTC TGCCACCATGGGGAACTGGGCTGTGAATGAGGGCCTCTCCATCTTTGTCATCCTGGTATG GCTGGGGTTGAACGTCTTCCTCTTTGTCCACTATTACCTGCTGTATGATACGTCAAAAGA GTACATTTACACTCGAAAACTTCTTGGGTCTGCGCTGGCACTGGCCAGGGCCCCTGCCGC CTGCCTGAATTTCAACTGCATGCTGATTCTGCTGCCGGTCTGTCGAAACCTGCTCTCCTT CCTTAGGGGTTCCAGTGCGTGCTGCTCAACAAGAATTCGAAGACAGCTGGACAGGAACCT CACCTTTCATAAAATGGTGGCGTGGATGATTGCACTTCACACCACGATTCACACCATTGC CCATCTGTTTAATGTGGAATGGTGTGTGAACGCCCGAGTCAACAATTCTGACCCGTACTC AATAGCACTCTCTGACATAGGAGATAAGCCTAATGAAACGTACCTCAATTTCGTTCGACA GAGAATCAAGAATCCTGAAGGAGGCCTGTACGTGGCTGTGACTCGGCTGGCAGGCATCAC AGGCGTCGTCATCACGCTGTGTCTCATATTAATTATCACCTCCTCCACCAAGACCATCCG GAGGTCTTACTTCGAGGTGTTCTGGTACACACACCATCTCTTTGTGATCTTCTTCATTGG CCTCGCCATCCATGGAGCCGAGCGAATTGTACGTAGGCAGACCCCAAAGAGTTTGTTGGT CCACGATCCAAAGGCATGTGCTCAAAACATCTCACAATGGGGAAAAATAAAGGACTGCCC GATCCCGGAGTTCGCAGGGAACCCTCCTATGACTTGGAAATGGATCGTGGGTCCCATGTT CCTGTATCTGTGTGAGAGGCTGGTGCGGTTTTGGCGATCTCAGCAGAAGGTGGTCATTAC CAAGGTGGTCACTCATCCTTTCAAAACCATCGAGCTACAGATGAAGAAGAAGGGATTCAG GATGGAGGTGGGACAATACATTTTCGTCAAGTGTCCCGCAGTGTCCAAGCTGGAGTGGCA CCCTTTCACCCTGACCTCTGCCCCTGAGGAAGACTTCTTTAGCATCCATATCCGCATTGT TGGCGACTGGACAGAGGGACTGTTCAAAGCCTGTGGCTGTGATAAGCAGGAGTTTCAAGA TGCCTGGAAACTACCTAAGATCGCTGTGGACGGGCCCTTCGGCACCGCCAGTGAAGACGT GTTCAGTTACGAGGTGGTCATGTTAGTGGGAGCAGGGATTGGGGTCACGCCCTTCGCCTC CATTCTCAAGTCGGTCTGGTACAAGTATTGCAATAATGCCACCAATCTGAGGCTCAAAAA GATCTACTTCTACTGGCTGTGCCGGGACACACATGCCTTCGAGTGGTTTGCCGACCTGCT GCAGCTGCTGGAGACCCAGATGCAGGAGAGGAACAACGCCGGCTTCCTCAGCTACAACAT CTACCTCACTGGCTGGGATGAGTCACAGGCCAATCACTTTGCCGTGCACCATGATGAGGA GAAAGATGTGATCACAGGCCTGAAGCAAAAGACCTTGTACGGACGGCCCAACTGGGATAA CGAGTTCAAGACCATTGCAAGTCAACACCCCACTACCAGAATAGGAGTTTTCCTCTGCGG ACCGGAAGCCTTGGCTGAAACCCTCAATAAGCAGTGCATCTCCAACTCCGACTCCAGCCC GAGGGGAGTGCATTTCATTTTCAATAAGGAAAACTTCTAACCGGTCTCATCCACGAGGAA ATAAATGTGGGTCGTACTGCCAAATGCCCAGATAATGCCAGTTGATAATAGAAGTTCCTT CCTTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 956-1074, + strand, RNAz p=0.686458 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 956-1074, + strand, RNAz p=0.686458 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-111, gnl|bosTau2|chrX (34382780-34382670) | |
| 1-111, gnl|Hg17|chrX (37395481-37395591) | |
| 1-111, gnl|Mm7|chrX (7902465-7902357) | |
| 208-319, gnl|bosTau2|chrX (34379042-34378931) | |
| 208-319, gnl|canFam2|chrX (32486896-32487000) | |
| 208-319, gnl|danRer3|chrNA (49907249-49907336) | |
| 208-319, gnl|dasNov1|scaffold_4443 (41525-41630) | |
| 208-319, gnl|echTel1|scaffold_313041 (83879-83774) | |
| 208-319, gnl|fr1|chrUn (32774753-32774846) | |
| 208-319, gnl|galGal2|chr1 (106840260-106840164) | |
| 208-319, gnl|hg17|chrX (37398937-37399042) | |
| 208-319, gnl|Hg17|chrX (37398959-37399070) | |
| 208-319, gnl|loxAfr1|scaffold_44286 (54752-54857) | |
| 208-319, gnl|mm7|chrX (7898929-7898824) | |
| 208-319, gnl|Mm7|chrX (7898905-7898794) | |
| 208-319, gnl|monDom2|scaffold_29 (27253290-27253185) | |
| 208-319, gnl|oryCun1|scaffold_200312 (43927-44030) | |
| 208-319, gnl|panTro1|chrX (38511220-38511325) | |
| 208-319, gnl|rheMac2|chrX (35539338-35539443) | |
| 208-319, gnl|rn3|chrX (25597378-25597275) | |
| 208-319, gnl|tetNig1|chr3 (1471313-1471412) | |
| 549-745, gnl|bosTau2|chrX (34368535-34368339) | |
| 549-745, gnl|Hg17|chrX (37411415-37411611) | |
| 549-745, gnl|Mm7|chrX (7886928-7886732) | |
| 956-1219, gnl|bosTau2|chrX (34359180-34358916) | |
| 956-1219, gnl|Hg17|chrX (37419338-37419601) | |
| 956-1219, gnl|Mm7|chrX (7880105-7879842) | |
| 1380-1529, gnl|bosTau2|chrX (34355580-34355431) | |
| 1380-1529, gnl|canFam2|chrX (32513857-32513996) | |
| 1380-1529, gnl|danRer3|chrNA (49917151-49917290) | |
| 1380-1529, gnl|dasNov1|scaffold_9309 (1631-1492) | |
| 1380-1529, gnl|echTel1|scaffold_313041 (60121-59982) | |
| 1380-1529, gnl|fr1|chrUn (32777443-32777582) | |
| 1380-1529, gnl|galGal2|chr1 (106826807-106826668) | |
| 1380-1529, gnl|hg17|chrX (37421855-37421994) | |
| 1380-1529, gnl|Hg17|chrX (37421855-37422004) | |
| 1380-1529, gnl|loxAfr1|scaffold_64902 (3906-4045) | |
| 1380-1529, gnl|mm7|chrX (7875833-7875694) | |
| 1380-1529, gnl|Mm7|chrX (7875831-7875682) | |
| 1380-1529, gnl|monDom2|scaffold_29 (27214518-27214379) | |
| 1380-1529, gnl|oryCun1|scaffold_201571 (94717-94856) | |
| 1380-1529, gnl|panTro1|chrX (38609592-38609731) | |
| 1380-1529, gnl|rheMac2|chrX (35562355-35562494) | |
| 1380-1529, gnl|rn3|chrX (25572102-25571964) | |
| 1380-1529, gnl|tetNig1|chr3 (1473536-1473675) | |
| 1380-1529, gnl|xenTro1|scaffold_247 (1419968-1419829) | |
| 1654-1872, gnl|bosTau2|chrX (34351375-34351157) | |
| 1654-1872, gnl|Hg17|chrX (37426261-37426479) | |
| 1654-1872, gnl|Mm7|chrX (7871493-7871294) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-111, gnl|bosTau2|chrX (34382780-34382670) | |
| 1-111, gnl|Hg17|chrX (37395481-37395591) | |
| 1-111, gnl|Mm7|chrX (7902465-7902357) | |
| 208-319, gnl|bosTau2|chrX (34379042-34378931) | |
| 208-319, gnl|canFam2|chrX (32486896-32487000) | |
| 208-319, gnl|danRer3|chrNA (49907249-49907336) | |
| 208-319, gnl|dasNov1|scaffold_4443 (41525-41630) | |
| 208-319, gnl|echTel1|scaffold_313041 (83879-83774) | |
| 208-319, gnl|fr1|chrUn (32774753-32774846) | |
| 208-319, gnl|galGal2|chr1 (106840260-106840164) | |
| 208-319, gnl|hg17|chrX (37398937-37399042) | |
| 208-319, gnl|Hg17|chrX (37398959-37399070) | |
| 208-319, gnl|loxAfr1|scaffold_44286 (54752-54857) | |
| 208-319, gnl|mm7|chrX (7898929-7898824) | |
| 208-319, gnl|Mm7|chrX (7898905-7898794) | |
| 208-319, gnl|monDom2|scaffold_29 (27253290-27253185) | |
| 208-319, gnl|oryCun1|scaffold_200312 (43927-44030) | |
| 208-319, gnl|panTro1|chrX (38511220-38511325) | |
| 208-319, gnl|rheMac2|chrX (35539338-35539443) | |
| 208-319, gnl|rn3|chrX (25597378-25597275) | |
| 208-319, gnl|tetNig1|chr3 (1471313-1471412) | |
| 549-745, gnl|bosTau2|chrX (34368535-34368339) | |
| 549-745, gnl|Hg17|chrX (37411415-37411611) | |
| 549-745, gnl|Mm7|chrX (7886928-7886732) | |
| 956-1219, gnl|bosTau2|chrX (34359180-34358916) | |
| 956-1219, gnl|Hg17|chrX (37419338-37419601) | |
| 956-1219, gnl|Mm7|chrX (7880105-7879842) | |
| 1380-1529, gnl|bosTau2|chrX (34355580-34355431) | |
| 1380-1529, gnl|canFam2|chrX (32513857-32513996) | |
| 1380-1529, gnl|danRer3|chrNA (49917151-49917290) | |
| 1380-1529, gnl|dasNov1|scaffold_9309 (1631-1492) | |
| 1380-1529, gnl|echTel1|scaffold_313041 (60121-59982) | |
| 1380-1529, gnl|fr1|chrUn (32777443-32777582) | |
| 1380-1529, gnl|galGal2|chr1 (106826807-106826668) | |
| 1380-1529, gnl|hg17|chrX (37421855-37421994) | |
| 1380-1529, gnl|Hg17|chrX (37421855-37422004) | |
| 1380-1529, gnl|loxAfr1|scaffold_64902 (3906-4045) | |
| 1380-1529, gnl|mm7|chrX (7875833-7875694) | |
| 1380-1529, gnl|Mm7|chrX (7875831-7875682) | |
| 1380-1529, gnl|monDom2|scaffold_29 (27214518-27214379) | |
| 1380-1529, gnl|oryCun1|scaffold_201571 (94717-94856) | |
| 1380-1529, gnl|panTro1|chrX (38609592-38609731) | |
| 1380-1529, gnl|rheMac2|chrX (35562355-35562494) | |
| 1380-1529, gnl|rn3|chrX (25572102-25571964) | |
| 1380-1529, gnl|tetNig1|chr3 (1473536-1473675) | |
| 1380-1529, gnl|xenTro1|scaffold_247 (1419968-1419829) | |
| 1654-1872, gnl|bosTau2|chrX (34351375-34351157) | |
| 1654-1872, gnl|Hg17|chrX (37426261-37426479) | |
| 1654-1872, gnl|Mm7|chrX (7871493-7871294) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| clu (0.478583) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cty (0.10408) |