Ss1.1-Lng1-LNG010102H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTTCAACAAAGATGGTGCCCATGGTACAGGTTCCCTGACTGTCTGGATTCCGGTTGCA GTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGACGGGCACATGGAGGCTAGAGA CAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCAGAGGTGCTGGTAGAGGGGCT GGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAAAACCACGTTCAAGAAATTAA AGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTGGATATCCTACCTTCCAGGGG TCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAATTCCCTTGGGTAAGGGAGAA GCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCTGCAGATGACGCGATGGCTGG AATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGGCAGATCAACCAGCTGGCGCA GAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTGGGCCTGTCCCAGACCGACAT CTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCCCAGGTGGTGGAGGCCTTTGT CCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAGAGCCTTCACAGGAGCCTCCA GGCCATGGAGGTGGACCCGTCTGTGCTCCAGCACATGTTGGAATGATGGTGCACCCATTA ACACCCGGGGCCCCCCGTGGCATGTGCCAGATCCTCATTCTCACCCGGGGCAGGTAGATT TGGGGGGATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTTCAACAAAGATGGTGCCCATGGTACAGGTTCCCTGACTGTCTGGATTCCGGTTGCA GTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGACGGGCACATGGAGGCTAGAGA CAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCAGAGGTGCTGGTAGAGGGGCT GGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAAAACCACGTTCAAGAAATTAA AGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTGGATATCCTACCTTCCAGGGG TCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAATTCCCTTGGGTAAGGGAGAA GCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCTGCAGATGACGCGATGGCTGG AATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGGCAGATCAACCAGCTGGCGCA GAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTGGGCCTGTCCCAGACCGACAT CTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCCCAGGTGGTGGAGGCCTTTGT CCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAGAGCCTTCACAGGAGCCTCCA GGCCATGGAGGTGGACCCGTCTGTGCTCCAGCACATGTTGGAATGATGGTGCACCCATTA ACACCCGGGGCCCCCCGTGGCATGTGCCAGATCCTCATTCTCACCCGGGGCAGGTAGATT TGGGGGGATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 101-339, + strand, RNAz p=0.955523 | |
| 254-373, + strand, RNAz p=0.847298 | |
| 494-765, - strand, RNAz p=0.829925 | |
| 653-772, - strand, RNAz p=0.999594 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-339, + strand, RNAz p=0.955523 | |
| 254-373, + strand, RNAz p=0.847298 | |
| 494-765, - strand, RNAz p=0.829925 | |
| 653-772, - strand, RNAz p=0.999594 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003805, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 101-404, gnl|bosTau2|chr5 (14564338-14564641) | |
| 101-404, gnl|canFam2|chr15 (36890266-36890506) | |
| 101-404, gnl|danRer3|chr4 (19671823-19671594) | |
| 101-404, gnl|dasNov1|scaffold_4907 (52380-52140) | |
| 101-404, gnl|fr1|chrUn (296500855-296500615) | |
| 101-404, gnl|galGal2|chr1 (41714167-41714409) | |
| 101-404, gnl|hg17|chr12 (92575009-92575249) | |
| 101-404, gnl|Hg17|chr12 (92575013-92575316) | |
| 101-404, gnl|loxAfr1|scaffold_1358 (11251-11490) | |
| 101-404, gnl|mm7|chr10 (94883494-94883254) | |
| 101-404, gnl|Mm7|chr10 (94883488-94883185) | |
| 101-404, gnl|monDom2|scaffold_34 (22648352-22648113) | |
| 101-404, gnl|oryCun1|scaffold_199791 (560-800) | |
| 101-404, gnl|panTro1|chr10 (94745521-94745761) | |
| 101-404, gnl|rheMac2|chr11 (94889588-94889828) | |
| 101-404, gnl|rn3|chr7 (32536648-32536408) | |
| 101-404, gnl|xenTro1|scaffold_247 (458263-458497) | |
| 494-786, gnl|bosTau2|chr5 (14751439-14751726) | |
| 494-786, gnl|canFam2|chr15 (37063037-37063249) | |
| 494-786, gnl|danRer3|chr4 (19638722-19638510) | |
| 494-786, gnl|dasNov1|scaffold_6903 (21122-21334) | |
| 494-786, gnl|echTel1|scaffold_309646 (70659-70447) | |
| 494-786, gnl|galGal2|chr1 (41784401-41784613) | |
| 494-786, gnl|hg17|chr12 (92746304-92746516) | |
| 494-786, gnl|Hg17|chr12 (92746303-92746602) | |
| 494-786, gnl|loxAfr1|scaffold_9275 (59961-59749) | |
| 494-786, gnl|mm7|chr10 (94736489-94736277) | |
| 494-786, gnl|Mm7|chr10 (94736488-94736173) | |
| 494-786, gnl|monDom2|scaffold_34 (22380015-22379803) | |
| 494-786, gnl|oryCun1|scaffold_210016 (4816-4604) | |
| 494-786, gnl|panTro1|chr10 (95003200-95003412) | |
| 494-786, gnl|rheMac2|chr11 (95067674-95067886) | |
| 494-786, gnl|rn3|chr7 (32379637-32379425) | |
| 494-786, gnl|tetNig1|chrUn_random (126328735-126328928) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-404, gnl|bosTau2|chr5 (14564338-14564641) | |
| 101-404, gnl|canFam2|chr15 (36890266-36890506) | |
| 101-404, gnl|danRer3|chr4 (19671823-19671594) | |
| 101-404, gnl|dasNov1|scaffold_4907 (52380-52140) | |
| 101-404, gnl|fr1|chrUn (296500855-296500615) | |
| 101-404, gnl|galGal2|chr1 (41714167-41714409) | |
| 101-404, gnl|hg17|chr12 (92575009-92575249) | |
| 101-404, gnl|Hg17|chr12 (92575013-92575316) | |
| 101-404, gnl|loxAfr1|scaffold_1358 (11251-11490) | |
| 101-404, gnl|mm7|chr10 (94883494-94883254) | |
| 101-404, gnl|Mm7|chr10 (94883488-94883185) | |
| 101-404, gnl|monDom2|scaffold_34 (22648352-22648113) | |
| 101-404, gnl|oryCun1|scaffold_199791 (560-800) | |
| 101-404, gnl|panTro1|chr10 (94745521-94745761) | |
| 101-404, gnl|rheMac2|chr11 (94889588-94889828) | |
| 101-404, gnl|rn3|chr7 (32536648-32536408) | |
| 101-404, gnl|xenTro1|scaffold_247 (458263-458497) | |
| 494-786, gnl|bosTau2|chr5 (14751439-14751726) | |
| 494-786, gnl|canFam2|chr15 (37063037-37063249) | |
| 494-786, gnl|danRer3|chr4 (19638722-19638510) | |
| 494-786, gnl|dasNov1|scaffold_6903 (21122-21334) | |
| 494-786, gnl|echTel1|scaffold_309646 (70659-70447) | |
| 494-786, gnl|galGal2|chr1 (41784401-41784613) | |
| 494-786, gnl|hg17|chr12 (92746304-92746516) | |
| 494-786, gnl|Hg17|chr12 (92746303-92746602) | |
| 494-786, gnl|loxAfr1|scaffold_9275 (59961-59749) | |
| 494-786, gnl|mm7|chr10 (94736489-94736277) | |
| 494-786, gnl|Mm7|chr10 (94736488-94736173) | |
| 494-786, gnl|monDom2|scaffold_34 (22380015-22379803) | |
| 494-786, gnl|oryCun1|scaffold_210016 (4816-4604) | |
| 494-786, gnl|panTro1|chr10 (95003200-95003412) | |
| 494-786, gnl|rheMac2|chr11 (95067674-95067886) | |
| 494-786, gnl|rn3|chr7 (32379637-32379425) | |
| 494-786, gnl|tetNig1|chrUn_random (126328735-126328928) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| mas (0.210305) | |
| med (0.116252) |