Non-Coding RNA Search

Ss1.1-Lng1-LNG010103F09.5

Sequence:


               
               AGTCGACCGAGGGAGCTGCGCGCGGCACGCGGCTGGCCTGGCTGAGGCGCAAGGGCTCGG
GCGGGCGGGCGGACAGACGAACCGACAGACGGAGTGAACGAGAGAGGCGCCGGGCAGCCG
CGAGCTCCCCGCACATCCCAGCCAGGCCTGCACCCCAAGGCCGGCAGCAGATCGTGCCCG
GCGGGGTCTCCTGCGCTCTGCCCGCCCCGGCTCCCGTGCCAGCGCCCAGCTCCCGCCGCC
GCCTCTAAAGTGATCGCTGCCTCGCCGCCTCCGCCCGGCCCGGGACCATGAAGCTGCTGC
CGTCGGTGGTGCTGAAGCTCTTTCTGGCTGCAGTGTTCTCGGCGCTGGTGACCGGCGAGA
GCCTGGAGCGCCTGCGGAGGGGGCTGGCGGATGGAACCAGCAATCTGGTCTCCCCTACCG
AATCTACGGACCAGCTGCTGCCCCCGGGAGGTGGCCGAGGCCGGGAAGTCCTGGACTTGG
AAGAGGCAGACCTGGACCTTTTGAGAGCTGATTTCTCTTCCAAGCCACAAGCTCTGGCCA
CACCGAGCAAGGAGGAGCGAGGGAAAAGAAAGAAGAAAGGCAAAGGGTTAGGGAAGAAGA
GAGACCCGTGCCTTCGGAAGTACAAGGATTTCTGCATCCACGGAGAGTGCAAGTACGTGA
AGGAGCTCCGGGCGCCATCCTGCATCTGCCACCCCGGTTACCACGGAGAGAGGTGTCATG
GGCTGAGCCTCCCGGTGAAAAATCGTTTATATACATATGATCACACCACCATCCTGGCTG
TGGTGGCCGTGGTGCTGTCGTCCGTCTGTCTGCTCGTCATTGTGGGGCTTCTCATGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGACCGAGGGAGCTGCGCGCGGCACGCGGCTGGCCTGGCTGAGGCGCAAGGGCTCGG
GCGGGCGGGCGGACAGACGAACCGACAGACGGAGTGAACGAGAGAGGCGCCGGGCAGCCG
CGAGCTCCCCGCACATCCCAGCCAGGCCTGCACCCCAAGGCCGGCAGCAGATCGTGCCCG
GCGGGGTCTCCTGCGCTCTGCCCGCCCCGGCTCCCGTGCCAGCGCCCAGCTCCCGCCGCC
GCCTCTAAAGTGATCGCTGCCTCGCCGCCTCCGCCCGGCCCGGGACCATGAAGCTGCTGC
CGTCGGTGGTGCTGAAGCTCTTTCTGGCTGCAGTGTTCTCGGCGCTGGTGACCGGCGAGA
GCCTGGAGCGCCTGCGGAGGGGGCTGGCGGATGGAACCAGCAATCTGGTCTCCCCTACCG
AATCTACGGACCAGCTGCTGCCCCCGGGAGGTGGCCGAGGCCGGGAAGTCCTGGACTTGG
AAGAGGCAGACCTGGACCTTTTGAGAGCTGATTTCTCTTCCAAGCCACAAGCTCTGGCCA
CACCGAGCAAGGAGGAGCGAGGGAAAAGAAAGAAGAAAGGCAAAGGGTTAGGGAAGAAGA
GAGACCCGTGCCTTCGGAAGTACAAGGATTTCTGCATCCACGGAGAGTGCAAGTACGTGA
AGGAGCTCCGGGCGCCATCCTGCATCTGCCACCCCGGTTACCACGGAGAGAGGTGTCATG
GGCTGAGCCTCCCGGTGAAAAATCGTTTATATACATATGATCACACCACCATCCTGGCTG
TGGTGGCCGTGGTGCTGTCGTCCGTCTGTCTGCTCGTCATTGTGGGGCTTCTCATGTTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q14487_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q14487_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               506-685, + strand, RNAz p=0.85144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-685, + strand, RNAz p=0.85144

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-333, gnl|bosTau2|chr7 (30797933-30798246)
               

               
               1-333, gnl|Hg17|chr5 (139706372-139706052)
               

               
               1-333, gnl|Mm7|chr18 (36892012-36891706)
               


               
               506-685, gnl|bosTau2|chr7 (30801483-30801662)
               

               
               506-685, gnl|Hg17|chr5 (139702583-139702404)
               

               
               506-685, gnl|Mm7|chr18 (36888974-36888795)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-333, gnl|bosTau2|chr7 (30797933-30798246)
               

               
               1-333, gnl|Hg17|chr5 (139706372-139706052)
               

               
               1-333, gnl|Mm7|chr18 (36892012-36891706)
               


               
               506-685, gnl|bosTau2|chr7 (30801483-30801662)
               

               
               506-685, gnl|Hg17|chr5 (139702583-139702404)
               

               
               506-685, gnl|Mm7|chr18 (36888974-36888795)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1-333, gnl\|bosTau2\|chr7 (30797933-30798246)
	1-333, gnl\|Hg17\|chr5 (139706372-139706052)
	1-333, gnl\|Mm7\|chr18 (36892012-36891706)

	506-685, gnl\|bosTau2\|chr7 (30801483-30801662)
	506-685, gnl\|Hg17\|chr5 (139702583-139702404)
	506-685, gnl\|Mm7\|chr18 (36888974-36888795)