Non-Coding RNA Search

Ss1.1-Lng1-LNG010104F11.5

Sequence:


               
               TCATTATCACCCGACTGGTCATCCTGCCCTTCTGGATCCTGCATTGCACCCTGGTTGTAC
CCACTGGAGCTTTATCCTGCCTTCTTGGGCTATTACTTCTTCAATTTCATGATGGGAGTG
TTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCTCACAAGTTCATA
ACTGGAAAGCTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGG
GAGGAAGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCTCTAGCCAATGGTCACCCCATC
CTCAGTAACAACCATCGTAAGAATGACTGAACCATTGTCTCTGCTGCCCCTCAGAATAAC
GCATAAAGCCAAGGAACTACCCCACCCTCCCCACAGGGTCACTTTAAGCTCTGGGGAGAA
AGGAGAAATCAAGAGGAGAGTGTTCTCCGTGCCCCCACCCCCTGCTTCTTTGTCACCCAG
TTGCCTTTAAACCAAATTTGAACCAGCCAGTCCCCAGGAAAGGAGAGGCTGGTTATATCC
TTTGTTAGAGGGGGGATGGTCTTATTTTCCTCTCTGTTTTCCAAGTTGTCCTTTCTATTA
CTTTCGAGACCTTTCCTGCGCTCTGGGGGTCGGGAGGCTACAACTCACATTCCAATAACT
TCAGAATTTGGCCCTAGCTGTCTGCCTTTGACTCCCTGACCTCTAAAGCCAGGGTCGTGC
CTTACTGTCCCACCTGTGGGCCTCATTCTGCCAAAGTTGGACCAAGGCTCACCTTCTAAG
CTCCCCAACTTGGACCAGAAACCAAAGCTGAGCTTTCACTTTTTCCCTCCTAAGAAACAA
ATGAACTGAGTGTAGGAGGGGTGCATGTGACCCATATCCTACCTCTGCCAAAAAGTGGGG
GCCACACTGGGGACTGCTCAGACAAGTCTTCTGTTACTTCTCTGCCAGCTGTCCCCATAG
TCACAGGTCCAAGATCCTAATGCCTCCTTTCTCTGGCCTCTTTCCCTAGGCTAGCCGGTT
TGGAGTAGAATGGCAACTAGTTCTAATTTTTATTTATTAAACATTTGGGGTTTTTGGTTT
TAAAGCCAGAATTACAGCTAGCACCTGGCATTTCAGCAGAGGGACCACTTCAGACCAAAA
TGTACTGTTAATGGTTTTTTTTAATTAAAATATATTAAAGATTAAGTGAAACATGGCAAC
AAGTGTTTGAGACTATTAAGAATTGAGAGAAGAGCGATCAACTAAATAAACTAAGGTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTATCACCCGACTGGTCATCCTGCCCTTCTGGATCCTGCATTGCACCCTGGTTGTAC
CCACTGGAGCTTTATCCTGCCTTCTTGGGCTATTACTTCTTCAATTTCATGATGGGAGTG
TTACAGCTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCTCACAAGTTCATA
ACTGGAAAGCTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGG
GAGGAAGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCTCTAGCCAATGGTCACCCCATC
CTCAGTAACAACCATCGTAAGAATGACTGAACCATTGTCTCTGCTGCCCCTCAGAATAAC
GCATAAAGCCAAGGAACTACCCCACCCTCCCCACAGGGTCACTTTAAGCTCTGGGGAGAA
AGGAGAAATCAAGAGGAGAGTGTTCTCCGTGCCCCCACCCCCTGCTTCTTTGTCACCCAG
TTGCCTTTAAACCAAATTTGAACCAGCCAGTCCCCAGGAAAGGAGAGGCTGGTTATATCC
TTTGTTAGAGGGGGGATGGTCTTATTTTCCTCTCTGTTTTCCAAGTTGTCCTTTCTATTA
CTTTCGAGACCTTTCCTGCGCTCTGGGGGTCGGGAGGCTACAACTCACATTCCAATAACT
TCAGAATTTGGCCCTAGCTGTCTGCCTTTGACTCCCTGACCTCTAAAGCCAGGGTCGTGC
CTTACTGTCCCACCTGTGGGCCTCATTCTGCCAAAGTTGGACCAAGGCTCACCTTCTAAG
CTCCCCAACTTGGACCAGAAACCAAAGCTGAGCTTTCACTTTTTCCCTCCTAAGAAACAA
ATGAACTGAGTGTAGGAGGGGTGCATGTGACCCATATCCTACCTCTGCCAAAAAGTGGGG
GCCACACTGGGGACTGCTCAGACAAGTCTTCTGTTACTTCTCTGCCAGCTGTCCCCATAG
TCACAGGTCCAAGATCCTAATGCCTCCTTTCTCTGGCCTCTTTCCCTAGGCTAGCCGGTT
TGGAGTAGAATGGCAACTAGTTCTAATTTTTATTTATTAAACATTTGGGGTTTTTGGTTT
TAAAGCCAGAATTACAGCTAGCACCTGGCATTTCAGCAGAGGGACCACTTCAGACCAAAA
TGTACTGTTAATGGTTTTTTTTAATTAAAATATATTAAAGATTAAGTGAAACATGGCAAC
AAGTGTTTGAGACTATTAAGAATTGAGAGAAGAGCGATCAACTAAATAAACTAAGGTAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-189, - strand, RNAz p=0.876593

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-189, - strand, RNAz p=0.876593

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-189, gnl|bosTau2|chr3 (16584963-16585117)
               

               
               34-189, gnl|Hg17|chr1 (147752179-147752025)
               

               
               34-189, gnl|Mm7|chr3 (95196268-95196422)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-189, gnl|bosTau2|chr3 (16584963-16585117)
               

               
               34-189, gnl|Hg17|chr1 (147752179-147752025)
               

               
               34-189, gnl|Mm7|chr3 (95196268-95196422)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               cli (0.458435)
               

               
               hyp (0.42851)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               hyp (0.42851)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	34-189, gnl\|bosTau2\|chr3 (16584963-16585117)
	34-189, gnl\|Hg17\|chr1 (147752179-147752025)
	34-189, gnl\|Mm7\|chr3 (95196268-95196422)

	cli (0.458435)
	hyp (0.42851)
	ctl (0.306138)
	sme (0.305437)
	cag (0.302389)
	pty (0.285429)
	fce (0.271592)
	med (0.232504)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	nep (0.183925)
	fbs (0.175346)
	fhi (0.169578)
	csk (0.140746)
	hlv (0.139256)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	jej (0.0989218)