Ss1.1-Lng1-LNG010106A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCGCGTGTACCCAGCGGACGCAGTTGTCTTAACTCCTGTGCTTGGCGGTAGAAGGGC GAGATGGCGGCGGAGGTGTTGCCGAGTGCAAGGTGGCTGTACTGTGGAGACCCCGAAGAG AGCCAGAGAGCTTTACTGGTCCAGTTCTCCAATGGGAAGCTGCAGAATCCAGGCAACATG CGCTTCACCTTGTACAAGAGCAATGATTCCACAAACCCCAGGAAGAGGAGTCAGCGGATC CTGGCAGCTGAAACAGACAGACTTTCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTC AAATGCAACACTCTCTGCAGGCACTTTGTGGGAATTTTGAACAAGACCTCTGGCCAAATG GAAGTCTATGATGCTGAAATGTTCAACATGCAGCCACTGTTTACAGACGAATCAGTTGAG AGTGAGTCAACACTGGAGAGTCAGGCCAAATCTTTTAGAGAAAAGATGGATTCGTGCATT GAAGCCTTTGGTACCACCAAACAGAAGCGGGCTCTGAACTCCAGGAGAATGAACAAAGTC GGCAGTGAATCTTTGAATCGTGCAGTGGCTAAAGCTGCAGAGGATATTATTGATTCAAAG GGAGTGACTGCCCTAGTCAGTGATGCCATCCACAGTGATTTGCAAGATGACTCTCTCTAC CTCCCTCCCTGCCATGCCGACGCAGCCAAGCCTGAAGACGTGTATAAATTTGAAGACCTT CTTTCCCCTGCGGAGTATGACGCTCTTCAGAGCCCGTCTGAAGCTTTCAGGAACGTCACA TCAGAACAAATACTGAAGATGATCGAAGAGAACAGTCACTGCTCCTTTGTCATTGAAGCG CTGAAGTCTTTGCCATCAAATCAGGAGAGCCGAGACCGCCAGGCCCGGTGCATCTGGTTT CTGGACACCCTCATCAAGTTTCGGGCACAGAAAGTGATTAAGCGGAAAAGTGCCCTGGGA CCTGGCATTCCCCATGTCATCAGCACCAAACTGCTGAAGCACTTTACCTGCTTGACCTAC AACAATGGCAGTTTGCGGAATGTAATTTCGGACTCTATGAAGGCAAAAATCACCGCCTAT GTGATCATACTCGCCTTGCACATAAATGACTTCCAGATTGACCTGACGATGTTACAGAGG GACTTGAAGCTCAGTGAGAAAAGGATGATGGAGATAGCCAAAGCCATGAGGCTGAAGATC TCTAAAAGGAAGGTTTCTCTGGCAGCGGGCAGGGAGGAGGATCACAAACTGGGCACTCTG TCCATCCCACTGCCTCCAGCCCAGACCTCGGACCGTCAGTCAAAGCGGAAGAGGATCTCC TAGAGGTGTGCTTTCCAGATGGACCATTTTGGCCACATCATAGCCACTCCTTCTGTTCAT TTGCTTTTTTATTTTTATGAAAGAGGAAAAAGGAAGCCTTGCCTTGGCACAGGTACGAAG CCAGAAGCCAGCATCTCCGTCGTGCTGGTCTTAAGAAGAAACTGAAAGCGTTGGCCCTGC TGGACTCCATCTCCCTCCTTTGGTGTTGCCGTGATTGTAAATGGCAGGTGGTTCCCGTGT GGGGTGTGGGAGGGTGGGGTCTGCGGAAGCTGGAGGAGAAAGATCTCACAGGCTGAGCCT TGGGCCACATCTAGTGGATAAAGGTTAATAAAAAGAAATGTGAAGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCGCGTGTACCCAGCGGACGCAGTTGTCTTAACTCCTGTGCTTGGCGGTAGAAGGGC GAGATGGCGGCGGAGGTGTTGCCGAGTGCAAGGTGGCTGTACTGTGGAGACCCCGAAGAG AGCCAGAGAGCTTTACTGGTCCAGTTCTCCAATGGGAAGCTGCAGAATCCAGGCAACATG CGCTTCACCTTGTACAAGAGCAATGATTCCACAAACCCCAGGAAGAGGAGTCAGCGGATC CTGGCAGCTGAAACAGACAGACTTTCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTC AAATGCAACACTCTCTGCAGGCACTTTGTGGGAATTTTGAACAAGACCTCTGGCCAAATG GAAGTCTATGATGCTGAAATGTTCAACATGCAGCCACTGTTTACAGACGAATCAGTTGAG AGTGAGTCAACACTGGAGAGTCAGGCCAAATCTTTTAGAGAAAAGATGGATTCGTGCATT GAAGCCTTTGGTACCACCAAACAGAAGCGGGCTCTGAACTCCAGGAGAATGAACAAAGTC GGCAGTGAATCTTTGAATCGTGCAGTGGCTAAAGCTGCAGAGGATATTATTGATTCAAAG GGAGTGACTGCCCTAGTCAGTGATGCCATCCACAGTGATTTGCAAGATGACTCTCTCTAC CTCCCTCCCTGCCATGCCGACGCAGCCAAGCCTGAAGACGTGTATAAATTTGAAGACCTT CTTTCCCCTGCGGAGTATGACGCTCTTCAGAGCCCGTCTGAAGCTTTCAGGAACGTCACA TCAGAACAAATACTGAAGATGATCGAAGAGAACAGTCACTGCTCCTTTGTCATTGAAGCG CTGAAGTCTTTGCCATCAAATCAGGAGAGCCGAGACCGCCAGGCCCGGTGCATCTGGTTT CTGGACACCCTCATCAAGTTTCGGGCACAGAAAGTGATTAAGCGGAAAAGTGCCCTGGGA CCTGGCATTCCCCATGTCATCAGCACCAAACTGCTGAAGCACTTTACCTGCTTGACCTAC AACAATGGCAGTTTGCGGAATGTAATTTCGGACTCTATGAAGGCAAAAATCACCGCCTAT GTGATCATACTCGCCTTGCACATAAATGACTTCCAGATTGACCTGACGATGTTACAGAGG GACTTGAAGCTCAGTGAGAAAAGGATGATGGAGATAGCCAAAGCCATGAGGCTGAAGATC TCTAAAAGGAAGGTTTCTCTGGCAGCGGGCAGGGAGGAGGATCACAAACTGGGCACTCTG TCCATCCCACTGCCTCCAGCCCAGACCTCGGACCGTCAGTCAAAGCGGAAGAGGATCTCC TAGAGGTGTGCTTTCCAGATGGACCATTTTGGCCACATCATAGCCACTCCTTCTGTTCAT TTGCTTTTTTATTTTTATGAAAGAGGAAAAAGGAAGCCTTGCCTTGGCACAGGTACGAAG CCAGAAGCCAGCATCTCCGTCGTGCTGGTCTTAAGAAGAAACTGAAAGCGTTGGCCCTGC TGGACTCCATCTCCCTCCTTTGGTGTTGCCGTGATTGTAAATGGCAGGTGGTTCCCGTGT GGGGTGTGGGAGGGTGGGGTCTGCGGAAGCTGGAGGAGAAAGATCTCACAGGCTGAGCCT TGGGCCACATCTAGTGGATAAAGGTTAATAAAAAGAAATGTGAAGTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1162-1280, + strand, RNAz p=0.893435 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1162-1280, + strand, RNAz p=0.893435 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 139-244, gnl|bosTau2|chr8 (29969353-29969248) | |
| 139-244, gnl|canFam2|chr11 (56822700-56822840) | |
| 139-244, gnl|danRer3|chr1 (15708281-15708417) | |
| 139-244, gnl|dasNov1|scaffold_1773 (43699-43561) | |
| 139-244, gnl|fr1|chrUn (17092338-17092469) | |
| 139-244, gnl|hg17|chr9 (37476667-37476809) | |
| 139-244, gnl|Hg17|chr9 (37476699-37476804) | |
| 139-244, gnl|loxAfr1|scaffold_23877 (47259-47398) | |
| 139-244, gnl|mm7|chr4 (45033056-45033197) | |
| 139-244, gnl|Mm7|chr4 (45033087-45033192) | |
| 139-244, gnl|oryCun1|scaffold_175414 (90626-90759) | |
| 139-244, gnl|panTro1|chr11 (38205470-38205612) | |
| 139-244, gnl|rheMac2|chr15 (39942176-39942034) | |
| 139-244, gnl|rn3|chr5 (61582926-61583068) | |
| 139-244, gnl|tetNig1|chr18 (137690-137825) | |
| 446-610, gnl|bosTau2|chr8 (29962808-29962643) | |
| 446-610, gnl|canFam2|chr11 (56828448-56828632) | |
| 446-610, gnl|danRer3|chr1 (15711870-15712054) | |
| 446-610, gnl|dasNov1|scaffold_1773 (36361-36176) | |
| 446-610, gnl|echTel1|scaffold_228424 (7766-7583) | |
| 446-610, gnl|fr1|chrUn (17093075-17093222) | |
| 446-610, gnl|hg17|chr9 (37483534-37483719) | |
| 446-610, gnl|Hg17|chr9 (37483535-37483700) | |
| 446-610, gnl|mm7|chr4 (45040556-45040742) | |
| 446-610, gnl|Mm7|chr4 (45040557-45040722) | |
| 446-610, gnl|monDom2|scaffold_19 (10206460-10206646) | |
| 446-610, gnl|oryCun1|scaffold_175414 (94891-95078) | |
| 446-610, gnl|panTro1|chr11 (38182472-38182657) | |
| 446-610, gnl|rheMac2|chr15 (39934630-39934445) | |
| 446-610, gnl|rn3|chr5 (61590754-61590939) | |
| 446-610, gnl|tetNig1|chr18 (138431-138595) | |
| 813-951, gnl|bosTau2|chr8 (29958768-29958630) | |
| 813-951, gnl|Hg17|chr9 (37488085-37488223) | |
| 813-951, gnl|Mm7|chr4 (45043149-45043287) | |
| 1162-1668, gnl|bosTau2|chr8 (29954590-29954104) | |
| 1162-1668, gnl|Hg17|chr9 (37493038-37493856) | |
| 1162-1668, gnl|Mm7|chr4 (45045753-45046305) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-244, gnl|bosTau2|chr8 (29969353-29969248) | |
| 139-244, gnl|canFam2|chr11 (56822700-56822840) | |
| 139-244, gnl|danRer3|chr1 (15708281-15708417) | |
| 139-244, gnl|dasNov1|scaffold_1773 (43699-43561) | |
| 139-244, gnl|fr1|chrUn (17092338-17092469) | |
| 139-244, gnl|hg17|chr9 (37476667-37476809) | |
| 139-244, gnl|Hg17|chr9 (37476699-37476804) | |
| 139-244, gnl|loxAfr1|scaffold_23877 (47259-47398) | |
| 139-244, gnl|mm7|chr4 (45033056-45033197) | |
| 139-244, gnl|Mm7|chr4 (45033087-45033192) | |
| 139-244, gnl|oryCun1|scaffold_175414 (90626-90759) | |
| 139-244, gnl|panTro1|chr11 (38205470-38205612) | |
| 139-244, gnl|rheMac2|chr15 (39942176-39942034) | |
| 139-244, gnl|rn3|chr5 (61582926-61583068) | |
| 139-244, gnl|tetNig1|chr18 (137690-137825) | |
| 446-610, gnl|bosTau2|chr8 (29962808-29962643) | |
| 446-610, gnl|canFam2|chr11 (56828448-56828632) | |
| 446-610, gnl|danRer3|chr1 (15711870-15712054) | |
| 446-610, gnl|dasNov1|scaffold_1773 (36361-36176) | |
| 446-610, gnl|echTel1|scaffold_228424 (7766-7583) | |
| 446-610, gnl|fr1|chrUn (17093075-17093222) | |
| 446-610, gnl|hg17|chr9 (37483534-37483719) | |
| 446-610, gnl|Hg17|chr9 (37483535-37483700) | |
| 446-610, gnl|mm7|chr4 (45040556-45040742) | |
| 446-610, gnl|Mm7|chr4 (45040557-45040722) | |
| 446-610, gnl|monDom2|scaffold_19 (10206460-10206646) | |
| 446-610, gnl|oryCun1|scaffold_175414 (94891-95078) | |
| 446-610, gnl|panTro1|chr11 (38182472-38182657) | |
| 446-610, gnl|rheMac2|chr15 (39934630-39934445) | |
| 446-610, gnl|rn3|chr5 (61590754-61590939) | |
| 446-610, gnl|tetNig1|chr18 (138431-138595) | |
| 813-951, gnl|bosTau2|chr8 (29958768-29958630) | |
| 813-951, gnl|Hg17|chr9 (37488085-37488223) | |
| 813-951, gnl|Mm7|chr4 (45043149-45043287) | |
| 1162-1668, gnl|bosTau2|chr8 (29954590-29954104) | |
| 1162-1668, gnl|Hg17|chr9 (37493038-37493856) | |
| 1162-1668, gnl|Mm7|chr4 (45045753-45046305) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nco (0.323468) | |
| ecc (0.23007) | |
| eye (0.170503) | |
| csp (0.161186) | |
| spl (0.143184) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.323468) | |
| ecc (0.23007) | |
| eye (0.170503) | |
| csp (0.161186) | |
| spl (0.143184) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| eje (0.0988338) |