Ss1.1-Lng1-LNG010106B11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCAGGAGCACTCAGACCCAATTCCTGGAAGCTGCTTCTCTGTGTGGCCACTGCTGCCG CCGGCTGCAGGGAACCTGCTTCCCACCCAGGAGATCTCCGAAGCCTTGAGGTTTGCCACA GCTTGGGTCCCTGGGGGAAAAGAGTGGTGTTGTGAGGAGAACCCACAGATTAGCTGCTTA CAAGTTTGGTTCCCAAGGTTGCAGCTCATCACTGGTGACAGAGGGCAATGCCAGGAAGCT GCTGAAGGCTTTCTTCTCCTCCTCCGCCATGGTTGACGGCATGAAGTATGAGGTGGCCTC CCAGCACGAGAGGGACGCCTCCCCTTTGGCCGAGGAGGCCGGCCCCCGGTCGGAGCAGGT AAAGCTGAAGAAGGAGATCTCACTGCTGAACGGCGTGTGCCTGATTGTGGGGAACATGAT TGGCTCGGGCATCTTCGTCTCCCCCAAAGGCGTGCTCATATACAGCGCCTCCTTCGGCCT CTCCCTGGTCATCTGGGCCGTCGGGGGCCTCTTCTCTGTCTTCGGGGCCCTTTGTTATGC GGAACTGGGCACCACCATTAAGAAGTCTGGGGCCAGGCGAGTACTTGTGACTGTGCTGGT GGCCTGAAGCAGGCAAGCCCAGCACTTTCTCCACTGGTGAGGCAGGCTGGCTCTCACCTT GCCTTTGGAGTTGCTGGGAGAAGGGCTGTTAAACCCTCATTGTGCTCTAGCTGTTGAGCT GGGAAGGAGGGAGCAGAGAGGCGGTCCACTTTGCCGCAGCAGGGAAGGTCTCCTAACCTT CATTAACTGTGCCTATGTCAAGTGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAA AGTATTGGCACTGATCATCATCATCATCGCAGGCATTGTTAGACTTGGTCAGGGAGCCTC GACTCACTTTGAGAATGCCTTTGAGGGTTCATCATTTTCAACAGGTGACATCGCTCTGGC ACTCTACTCAGCTCTCTTCTCTTACTCGGGCTGGGACACCCTCAACTATGTCACTGAAGA GATCAAGAATCCTGAGAGGAATCTGCCCCTCTCCATTGGCATTTCCATGCCCATTGTCAC CATCATCTACATCTTAACCAACGTGGCCTATTACACTGTGCTAGACATGAGGGACATCCT GGCCAGTGATGCTGTTGCTGTGACTTTTGCAGACCAGATTTTTGGAATATTCAACTGGAC AATTCCAGTGGCAGTTGCATTATCCTGCTTTGGTGGCCTCAATGCCTCCATTGTGGCTGC TTCTAGGCTTTTCTTTGTGGGCTCAAGAGAAGGCCATCTCCCTGATACCATCTGCATGAT TCATGTTGAGCGGTTCACACCGGTACCTGCTCTGCTGTTCAATGGTCTCATGGCGCTGAT CTACTTGTGCGTGGAGGACATCTTCCAGCTCATCAACTACTACAGCTTCAGCTACTGGTT CTTCGTGGGGCTCTCTATCGTGGGTCAGCTCTATTTGCGCTGGAAGGAGCCTGACAGGCC TCGTCCTCTCAAGCTCAGCATTTTCTTCCCCATTGTCTTCTGCCTCTGCACCATCTTCCT GGTGGCTGTTCCACTCTACAGTGATACCATCAACTCCCTTATCGGCATTGGCATTGCCCT CTCAGGCTTGCCCTTTTATTTCCTCATCATCAGAGTGCCAGAACACAAACGACCTCTTTG TCTCCGCAGGATTGTGGCATCCATCACATGGTACCTTCAGGTCCTGTGTATGTCAGTTGC TGCAGAGATGGATTTGGAAGATGGAGGAGAGATGCTCAAGCAACAAGATCCCAAGTCTAA TTAAACATCACAAGGAATCTTGAGATGTGGAAAGCAGGGGCCTCTTTTATCTCCTACCAG CCAGAGCCAAGAAGTTGAGAGGAAAGCTCACTTCATTGGAGGCAGCTACTAGAAGCCTCC TAGGCAGCTTCACCAACCTCTGAACTTGCCTTTTGAGAAATGGAGAGTAATTTATTTGTT TTGCTACATATTGTTCCAGGTTTCTTTTAAAGGGATGATAAAGCAGACTGTGATGGGGAG CATGCCAGGTGTGGGCTTGGTTGTTCTGGCAGCACGCTGCCATGTATTAAGATAGTCACT CACCTCTGGGGTGCCTGCCCATTCCTTTCTGTTGAAAGATCTAATAATGCTCCAAATTTC CAGTCTCCTTTAGAGACATGAAACTGTCACAGGTACTGGGCAATAAAAGGGTATGATCCT GAGCTCTCAGTGGCTTCATTTTTATATAGTGTCTTGAGGACAGCTCACATTAGCCTGGCA GGAACACTAGAAACAATCGTCTGTAGAAAGTATCTGAGTATTTCTTCCCTCTCAAGCCAA ATGCTGAAAGCTGATACAACCATCTCTACTGAAGAAAACACCTAAGCTGCTATAGCAAAA TATTAGCTTGTTAGCTAAAAGCTCTATCAACTTCTGTTCTTAATTATGATTAAAAACTTG AACACATCTACTTTTTATATATAATCTTGGAGTAAATGAATGTGGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCAGGAGCACTCAGACCCAATTCCTGGAAGCTGCTTCTCTGTGTGGCCACTGCTGCCG CCGGCTGCAGGGAACCTGCTTCCCACCCAGGAGATCTCCGAAGCCTTGAGGTTTGCCACA GCTTGGGTCCCTGGGGGAAAAGAGTGGTGTTGTGAGGAGAACCCACAGATTAGCTGCTTA CAAGTTTGGTTCCCAAGGTTGCAGCTCATCACTGGTGACAGAGGGCAATGCCAGGAAGCT GCTGAAGGCTTTCTTCTCCTCCTCCGCCATGGTTGACGGCATGAAGTATGAGGTGGCCTC CCAGCACGAGAGGGACGCCTCCCCTTTGGCCGAGGAGGCCGGCCCCCGGTCGGAGCAGGT AAAGCTGAAGAAGGAGATCTCACTGCTGAACGGCGTGTGCCTGATTGTGGGGAACATGAT TGGCTCGGGCATCTTCGTCTCCCCCAAAGGCGTGCTCATATACAGCGCCTCCTTCGGCCT CTCCCTGGTCATCTGGGCCGTCGGGGGCCTCTTCTCTGTCTTCGGGGCCCTTTGTTATGC GGAACTGGGCACCACCATTAAGAAGTCTGGGGCCAGGCGAGTACTTGTGACTGTGCTGGT GGCCTGAAGCAGGCAAGCCCAGCACTTTCTCCACTGGTGAGGCAGGCTGGCTCTCACCTT GCCTTTGGAGTTGCTGGGAGAAGGGCTGTTAAACCCTCATTGTGCTCTAGCTGTTGAGCT GGGAAGGAGGGAGCAGAGAGGCGGTCCACTTTGCCGCAGCAGGGAAGGTCTCCTAACCTT CATTAACTGTGCCTATGTCAAGTGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAA AGTATTGGCACTGATCATCATCATCATCGCAGGCATTGTTAGACTTGGTCAGGGAGCCTC GACTCACTTTGAGAATGCCTTTGAGGGTTCATCATTTTCAACAGGTGACATCGCTCTGGC ACTCTACTCAGCTCTCTTCTCTTACTCGGGCTGGGACACCCTCAACTATGTCACTGAAGA GATCAAGAATCCTGAGAGGAATCTGCCCCTCTCCATTGGCATTTCCATGCCCATTGTCAC CATCATCTACATCTTAACCAACGTGGCCTATTACACTGTGCTAGACATGAGGGACATCCT GGCCAGTGATGCTGTTGCTGTGACTTTTGCAGACCAGATTTTTGGAATATTCAACTGGAC AATTCCAGTGGCAGTTGCATTATCCTGCTTTGGTGGCCTCAATGCCTCCATTGTGGCTGC TTCTAGGCTTTTCTTTGTGGGCTCAAGAGAAGGCCATCTCCCTGATACCATCTGCATGAT TCATGTTGAGCGGTTCACACCGGTACCTGCTCTGCTGTTCAATGGTCTCATGGCGCTGAT CTACTTGTGCGTGGAGGACATCTTCCAGCTCATCAACTACTACAGCTTCAGCTACTGGTT CTTCGTGGGGCTCTCTATCGTGGGTCAGCTCTATTTGCGCTGGAAGGAGCCTGACAGGCC TCGTCCTCTCAAGCTCAGCATTTTCTTCCCCATTGTCTTCTGCCTCTGCACCATCTTCCT GGTGGCTGTTCCACTCTACAGTGATACCATCAACTCCCTTATCGGCATTGGCATTGCCCT CTCAGGCTTGCCCTTTTATTTCCTCATCATCAGAGTGCCAGAACACAAACGACCTCTTTG TCTCCGCAGGATTGTGGCATCCATCACATGGTACCTTCAGGTCCTGTGTATGTCAGTTGC TGCAGAGATGGATTTGGAAGATGGAGGAGAGATGCTCAAGCAACAAGATCCCAAGTCTAA TTAAACATCACAAGGAATCTTGAGATGTGGAAAGCAGGGGCCTCTTTTATCTCCTACCAG CCAGAGCCAAGAAGTTGAGAGGAAAGCTCACTTCATTGGAGGCAGCTACTAGAAGCCTCC TAGGCAGCTTCACCAACCTCTGAACTTGCCTTTTGAGAAATGGAGAGTAATTTATTTGTT TTGCTACATATTGTTCCAGGTTTCTTTTAAAGGGATGATAAAGCAGACTGTGATGGGGAG CATGCCAGGTGTGGGCTTGGTTGTTCTGGCAGCACGCTGCCATGTATTAAGATAGTCACT CACCTCTGGGGTGCCTGCCCATTCCTTTCTGTTGAAAGATCTAATAATGCTCCAAATTTC CAGTCTCCTTTAGAGACATGAAACTGTCACAGGTACTGGGCAATAAAAGGGTATGATCCT GAGCTCTCAGTGGCTTCATTTTTATATAGTGTCTTGAGGACAGCTCACATTAGCCTGGCA GGAACACTAGAAACAATCGTCTGTAGAAAGTATCTGAGTATTTCTTCCCTCTCAAGCCAA ATGCTGAAAGCTGATACAACCATCTCTACTGAAGAAAACACCTAAGCTGCTATAGCAAAA TATTAGCTTGTTAGCTAAAAGCTCTATCAACTTCTGTTCTTAATTATGATTAAAAACTTG AACACATCTACTTTTTATATATAATCTTGGAGTAAATGAATGTGGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 220-2162, + strand, RNAz p=0.815107 | |
| 893-1011, + strand, RNAz p=0.740439 | |
| 1162-1267, + strand, RNAz p=0.641073 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 220-2162, + strand, RNAz p=0.815107 | |
| 893-1011, + strand, RNAz p=0.740439 | |
| 1162-1267, + strand, RNAz p=0.641073 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 220-576, gnl|bosTau2|chr10 (14187371-14187724) | |
| 220-576, gnl|Hg17|chr14 (22352493-22352140) | |
| 220-576, gnl|Mm7|chr14 (49275275-49274919) | |
| 893-1079, gnl|bosTau2|chr10 (14596598-14596787) | |
| 893-1079, gnl|Hg17|chr14 (22317987-22317798) | |
| 893-1079, gnl|Mm7|chr14 (49244983-49244797) | |
| 1162-1267, gnl|bosTau2|chr10 (14598529-14598634) | |
| 1162-1267, gnl|canFam2|chr8 (6138473-6138544) | |
| 1162-1267, gnl|danRer3|chr23 (49352021-49352090) | |
| 1162-1267, gnl|dasNov1|scaffold_15862 (42426-42355) | |
| 1162-1267, gnl|echTel1|scaffold_290607 (78212-78277) | |
| 1162-1267, gnl|fr1|chrUn (247440520-247440449) | |
| 1162-1267, gnl|hg17|chr14 (22314876-22314947) | |
| 1162-1267, gnl|Hg17|chr14 (22314986-22314881) | |
| 1162-1267, gnl|loxAfr1|scaffold_31766 (3689-3760) | |
| 1162-1267, gnl|mm7|chr14 (49241280-49241351) | |
| 1162-1267, gnl|Mm7|chr14 (49241390-49241285) | |
| 1162-1267, gnl|monDom2|scaffold_12 (27106649-27106578) | |
| 1162-1267, gnl|oryCun1|scaffold_139853 (2492-2563) | |
| 1162-1267, gnl|panTro1|chr15 (21237074-21237145) | |
| 1162-1267, gnl|rheMac2|chr7 (85587046-85587117) | |
| 1162-1267, gnl|rn3|chr15 (32451151-32451222) | |
| 1162-1267, gnl|tetNig1|chr20 (734450-734381) | |
| 1162-1267, gnl|xenTro1|scaffold_1223 (71980-72071) | |
| 1364-1553, gnl|bosTau2|chr10 (14599741-14599929) | |
| 1364-1553, gnl|Hg17|chr14 (22313552-22313345) | |
| 1364-1553, gnl|Mm7|chr14 (49240161-49239971) | |
| 1692-2476, gnl|bosTau2|chr10 (14600500-14601283) | |
| 1692-2476, gnl|Hg17|chr14 (22312771-22311713) | |
| 1692-2476, gnl|Mm7|chr14 (49236964-49236010) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-576, gnl|bosTau2|chr10 (14187371-14187724) | |
| 220-576, gnl|Hg17|chr14 (22352493-22352140) | |
| 220-576, gnl|Mm7|chr14 (49275275-49274919) | |
| 893-1079, gnl|bosTau2|chr10 (14596598-14596787) | |
| 893-1079, gnl|Hg17|chr14 (22317987-22317798) | |
| 893-1079, gnl|Mm7|chr14 (49244983-49244797) | |
| 1162-1267, gnl|bosTau2|chr10 (14598529-14598634) | |
| 1162-1267, gnl|canFam2|chr8 (6138473-6138544) | |
| 1162-1267, gnl|danRer3|chr23 (49352021-49352090) | |
| 1162-1267, gnl|dasNov1|scaffold_15862 (42426-42355) | |
| 1162-1267, gnl|echTel1|scaffold_290607 (78212-78277) | |
| 1162-1267, gnl|fr1|chrUn (247440520-247440449) | |
| 1162-1267, gnl|hg17|chr14 (22314876-22314947) | |
| 1162-1267, gnl|Hg17|chr14 (22314986-22314881) | |
| 1162-1267, gnl|loxAfr1|scaffold_31766 (3689-3760) | |
| 1162-1267, gnl|mm7|chr14 (49241280-49241351) | |
| 1162-1267, gnl|Mm7|chr14 (49241390-49241285) | |
| 1162-1267, gnl|monDom2|scaffold_12 (27106649-27106578) | |
| 1162-1267, gnl|oryCun1|scaffold_139853 (2492-2563) | |
| 1162-1267, gnl|panTro1|chr15 (21237074-21237145) | |
| 1162-1267, gnl|rheMac2|chr7 (85587046-85587117) | |
| 1162-1267, gnl|rn3|chr15 (32451151-32451222) | |
| 1162-1267, gnl|tetNig1|chr20 (734450-734381) | |
| 1162-1267, gnl|xenTro1|scaffold_1223 (71980-72071) | |
| 1364-1553, gnl|bosTau2|chr10 (14599741-14599929) | |
| 1364-1553, gnl|Hg17|chr14 (22313552-22313345) | |
| 1364-1553, gnl|Mm7|chr14 (49240161-49239971) | |
| 1692-2476, gnl|bosTau2|chr10 (14600500-14601283) | |
| 1692-2476, gnl|Hg17|chr14 (22312771-22311713) | |
| 1692-2476, gnl|Mm7|chr14 (49236964-49236010) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cje (0.495704) | |
| clu (0.358938) | |
| nje (0.33184) | |
| pty (0.285429) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.495704) | |
| clu (0.358938) | |
| nje (0.33184) | |
| pty (0.285429) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |