Ss1.1-Lng1-LNG010106B12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACATCGCCAGCATCCTCACCAAGATGGCCAAGGAGGCCATTTTCCAGGACACGATGCG GAAGTTCCTGGAGAAAGAGTGTGACGTCCTCCCCGTGAAGCTGCTGGTGCCCCAGTGTCA CCACCTGCTGGAGACTTACTTTCCGCTGGTCGTTGATCACTTCCAGAGCCAAATGAACCT GAAGGCCATCTGCAAGCACTTGGGCCTGTGCAAACCTGAGCATCCAGAGCCAGGCCAGGG GCCAGAGCTGACAGGCTCTCTGCTGGACAAGCTGGCCCTCCCCCTGCTGCCCGCAGGCCT CCAGGCGAGGCCTGGGCCTCAGACACAGGATCTCTCCAAGCAGAAGTTCCCCATTCCTCT TCCCTTCTGCTGGCTCTGCAGGACTCTGATCAAGCGGATCCAAGCTGTGGTTCCCAAGGG TGTGCTGGGCAAGGCTGTGGCCCAGGTGTGCCACGTGGTACCCCTGGTGGTGGGCGGCAT CTGCCAGTGCCTGGCTGAGCGCTACATTGTCATCCTGCTGAACATGCTGCTGGACCGCAC ACTGCCCCAGCTGGTCTGTGGCCTCGTCCTCCGATGCTCCAGTGAGGACAGCGTGGGCTC AGCCCTCACTGGTCTGGGGTCCCTGCCAGGAGAATGGCTACCGCAAGACTCTGAGTGCCA GCTCTGCATGTTTGTGACCACTCAGGCAGAGAACAGCAGTGAGCAGGCCGTGCCACAGGC AATGCGCCAGGCCTGCCTGGGCTCCTGGCTGGACAAGCAAAAGTGTGAGCAGTTCGTGGA GCAGCATTCACTCCAGCTGCAGTCCTTCGTGTCCAGGGGCTGGGATGCCCACACCGCTTG CCAGGCCCTGGGGACGTGTATGACCCCATTCAGTCCTCTCCAGTGTGTCCACAGCCCCCA CGTCTGATGACCACTCAAAGCCATGCCAGGCCAGACCCCCGGCTCCTGAGGACCCCAGCA GCACCATCACCAGAGCGACTCTCTCGGACCCATCCACCCCACTTGCCCAGAATCCCCTGC CCTGACCCAGGCCTCAGGGGAGCTGCCACCTGGCTGAGGCTTCCCTTTCACAGCCCTCCT TGGGACTTGCTGAGCTTCTACATTTGATGTATTCAGACCAACCTAACCTTGCCTGAGGAA ATCAGACTTTGCTGCCCAAGGATGACAATCCCTCAGATGCCAGGAATTCCTCCATCACCT GCTGCCTCCCTCCTGAGACACGTCCCTCTCTCTCCCCATCTTCGAACCTTGGGACAGGGT GGTTCAGATGCAGCCTCCGTGCGCCTCGGGGCAAGGAAGTGCCTCTGAGAACAAGCTTGG TCGACCTCACAGTTCTGCCCTGAGCGGGACCCCAACAAAAAGGCCATGTATTTATTTCTT CATTCTTGTTTTAAAAATGCAGTGAGTGCCTGTAGCCAGACCACATTCTAGGGGCCAGGG CTAGAGTTGTGAACAAAATGGTACGCCCCGGCCCTCCTGGGCTCACACCCCAGGGCCCGC CTCTTCCATCTGGGGCTGTAGGGGTGGGGAGGGTGAGTGGGGGAGCCCAGCCTGCTCCTG AAACCTCTAGAATCACAAGCCCCCATGGGAGGCCAGGGGGAGGAAGTGTCTGCTGCAGCT CGGACCTTCCCTGCAAGGGCCAGCTGGACATCATCCCTCCCCACTGACGCCAGCTGGTGG GGCCTGGGGGGTCAGGGAGCTGGGCCTTCCATCCCTGGTGAAACAGGAAAAGCAGTGGAT GGCATAGGAGCCCCGGGCTCTGGTCCTGACTCTGCTATCAACTGGCCATGGGTCCCCAGC CAAGTAAGACACACGGCCCCTCACTGGCCCTCACTGGCCCTGGTGATGAAGGGGGAGCCC GGTGAGGTGGTCTTGGGGACTCTGCCACTCCTCCTGACTAGGCCCCTCCTCTAGCTCCAG CCCCTGCCCACAGCCACACCCAGAAGACTTCGCTCCCACACCTGCCTCCCCTACCACCTT TTCCTCGATAGGCCCTGAGGCCTGTGCTCTCAGTGCTGGGTCGGCCAGTCCATCCTAACT CTAACCACAGCCCAAAACCAGAGCCACTTCCCTCCTCTCTGAGTGTGAGGCATGGCCAAG GCTGCATCTTTTGGAGGAGGTCTGCAGAAGGGGCCCTGGGCCACCTTCACCTCCAACCCG AGCCAGCCCAGCTCCCACAGCGCCCCCAGAGCTGGGCCGAGGGGACCTCTTCATCACAGA AGTTGTCGTGGGCTTCCAGCCCCTCCCCAAGTCCTGGTCCAAGAGGACAGTGAGGGAGGA GCTGGGCCCTGCCCGACTCTGATCTCCATATGCACAAGATACTATACAGTTATTCTGCTA ACACTTTTCCACAATTCAAAATTCAGAAGAATAAAAAATGGAAACATCGATCCCAGAAAA AATAGACCTGTGAAATCCTTAAACTCCTTTTTAAAAGCAGACATCCCTGGAGTTCCCACT GTGGCGCGGTGGGTTAAATATCCGACTGCAGCAGCTCAGGTCGCTGAAAAGGCATGGGTT TGATCCCCAGCCCCGAAACTTCCATATGCAGTGGATGTGGCCACTAAAAAAAGTTTAAAA AAAAAAAAAATCAAGGGAGTTCCCATCGTGGCACAACGGAAATGAATCCAACTAGGAACC ATGAAGTTGCAGGTTTGACTCCTGACCTTGCTCAGTGGGTTAAGGATGCCGCGTTGCCAT GCACTGTGGTGTAGGTCAAAGACGCTGCTCAGATCTGATGTTGCTCTGGCTGTGGTGTAG GCCAGCAGCTGTAGCTCTGATTAGACCCCCTAGCCTGGGAACCTCTATATGCCGTGAACA CGGCCCTAAAAAAAGCTAAAAAAAAAAATCAGGAACGCCCTGGCATGGTCAAGCGTGGTG GAAACTGATTGGGCATGTTCACATTTGAAATGTTCTTCCGCTGAGGAGCGGTTGCTTTTT GTTACTGTGTGAAAAGGGGTTTTTATAAGGTTGAACCCTCAACTTTTGTTTGAAATGCCA GGGTGATTCCTGCTGTGATTTGTCTCCTCAAAGCTCTGCAGGGGACGGGCCTGCTGAGAA TCTGTCCCCATGCAACTCAGCACCGGTAAGAAGGCTAACAGAGAGGTAGCTGTGTTGTGG CTCAGCAGCAACGAACCCGAATAGTACCCATGAAGAGGTGGATTCGATCCCTGACCTCGC TCAGTGGGTTAAGGAACCGGCGATGCCATGAACTATGGTATAGTTCACAGAGGCGACTTG GATCCCACATTGCTGTGGCTGTGGTGTACACTGGCAGCTGCAGCTTCAATTAAACCCCTA GCCTGAGAACTTTCATATGCCACAGGTGCAGCCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACATCGCCAGCATCCTCACCAAGATGGCCAAGGAGGCCATTTTCCAGGACACGATGCG GAAGTTCCTGGAGAAAGAGTGTGACGTCCTCCCCGTGAAGCTGCTGGTGCCCCAGTGTCA CCACCTGCTGGAGACTTACTTTCCGCTGGTCGTTGATCACTTCCAGAGCCAAATGAACCT GAAGGCCATCTGCAAGCACTTGGGCCTGTGCAAACCTGAGCATCCAGAGCCAGGCCAGGG GCCAGAGCTGACAGGCTCTCTGCTGGACAAGCTGGCCCTCCCCCTGCTGCCCGCAGGCCT CCAGGCGAGGCCTGGGCCTCAGACACAGGATCTCTCCAAGCAGAAGTTCCCCATTCCTCT TCCCTTCTGCTGGCTCTGCAGGACTCTGATCAAGCGGATCCAAGCTGTGGTTCCCAAGGG TGTGCTGGGCAAGGCTGTGGCCCAGGTGTGCCACGTGGTACCCCTGGTGGTGGGCGGCAT CTGCCAGTGCCTGGCTGAGCGCTACATTGTCATCCTGCTGAACATGCTGCTGGACCGCAC ACTGCCCCAGCTGGTCTGTGGCCTCGTCCTCCGATGCTCCAGTGAGGACAGCGTGGGCTC AGCCCTCACTGGTCTGGGGTCCCTGCCAGGAGAATGGCTACCGCAAGACTCTGAGTGCCA GCTCTGCATGTTTGTGACCACTCAGGCAGAGAACAGCAGTGAGCAGGCCGTGCCACAGGC AATGCGCCAGGCCTGCCTGGGCTCCTGGCTGGACAAGCAAAAGTGTGAGCAGTTCGTGGA GCAGCATTCACTCCAGCTGCAGTCCTTCGTGTCCAGGGGCTGGGATGCCCACACCGCTTG CCAGGCCCTGGGGACGTGTATGACCCCATTCAGTCCTCTCCAGTGTGTCCACAGCCCCCA CGTCTGATGACCACTCAAAGCCATGCCAGGCCAGACCCCCGGCTCCTGAGGACCCCAGCA GCACCATCACCAGAGCGACTCTCTCGGACCCATCCACCCCACTTGCCCAGAATCCCCTGC CCTGACCCAGGCCTCAGGGGAGCTGCCACCTGGCTGAGGCTTCCCTTTCACAGCCCTCCT TGGGACTTGCTGAGCTTCTACATTTGATGTATTCAGACCAACCTAACCTTGCCTGAGGAA ATCAGACTTTGCTGCCCAAGGATGACAATCCCTCAGATGCCAGGAATTCCTCCATCACCT GCTGCCTCCCTCCTGAGACACGTCCCTCTCTCTCCCCATCTTCGAACCTTGGGACAGGGT GGTTCAGATGCAGCCTCCGTGCGCCTCGGGGCAAGGAAGTGCCTCTGAGAACAAGCTTGG TCGACCTCACAGTTCTGCCCTGAGCGGGACCCCAACAAAAAGGCCATGTATTTATTTCTT CATTCTTGTTTTAAAAATGCAGTGAGTGCCTGTAGCCAGACCACATTCTAGGGGCCAGGG CTAGAGTTGTGAACAAAATGGTACGCCCCGGCCCTCCTGGGCTCACACCCCAGGGCCCGC CTCTTCCATCTGGGGCTGTAGGGGTGGGGAGGGTGAGTGGGGGAGCCCAGCCTGCTCCTG AAACCTCTAGAATCACAAGCCCCCATGGGAGGCCAGGGGGAGGAAGTGTCTGCTGCAGCT CGGACCTTCCCTGCAAGGGCCAGCTGGACATCATCCCTCCCCACTGACGCCAGCTGGTGG GGCCTGGGGGGTCAGGGAGCTGGGCCTTCCATCCCTGGTGAAACAGGAAAAGCAGTGGAT GGCATAGGAGCCCCGGGCTCTGGTCCTGACTCTGCTATCAACTGGCCATGGGTCCCCAGC CAAGTAAGACACACGGCCCCTCACTGGCCCTCACTGGCCCTGGTGATGAAGGGGGAGCCC GGTGAGGTGGTCTTGGGGACTCTGCCACTCCTCCTGACTAGGCCCCTCCTCTAGCTCCAG CCCCTGCCCACAGCCACACCCAGAAGACTTCGCTCCCACACCTGCCTCCCCTACCACCTT TTCCTCGATAGGCCCTGAGGCCTGTGCTCTCAGTGCTGGGTCGGCCAGTCCATCCTAACT CTAACCACAGCCCAAAACCAGAGCCACTTCCCTCCTCTCTGAGTGTGAGGCATGGCCAAG GCTGCATCTTTTGGAGGAGGTCTGCAGAAGGGGCCCTGGGCCACCTTCACCTCCAACCCG AGCCAGCCCAGCTCCCACAGCGCCCCCAGAGCTGGGCCGAGGGGACCTCTTCATCACAGA AGTTGTCGTGGGCTTCCAGCCCCTCCCCAAGTCCTGGTCCAAGAGGACAGTGAGGGAGGA GCTGGGCCCTGCCCGACTCTGATCTCCATATGCACAAGATACTATACAGTTATTCTGCTA ACACTTTTCCACAATTCAAAATTCAGAAGAATAAAAAATGGAAACATCGATCCCAGAAAA AATAGACCTGTGAAATCCTTAAACTCCTTTTTAAAAGCAGACATCCCTGGAGTTCCCACT GTGGCGCGGTGGGTTAAATATCCGACTGCAGCAGCTCAGGTCGCTGAAAAGGCATGGGTT TGATCCCCAGCCCCGAAACTTCCATATGCAGTGGATGTGGCCACTAAAAAAAGTTTAAAA AAAAAAAAAATCAAGGGAGTTCCCATCGTGGCACAACGGAAATGAATCCAACTAGGAACC ATGAAGTTGCAGGTTTGACTCCTGACCTTGCTCAGTGGGTTAAGGATGCCGCGTTGCCAT GCACTGTGGTGTAGGTCAAAGACGCTGCTCAGATCTGATGTTGCTCTGGCTGTGGTGTAG GCCAGCAGCTGTAGCTCTGATTAGACCCCCTAGCCTGGGAACCTCTATATGCCGTGAACA CGGCCCTAAAAAAAGCTAAAAAAAAAAATCAGGAACGCCCTGGCATGGTCAAGCGTGGTG GAAACTGATTGGGCATGTTCACATTTGAAATGTTCTTCCGCTGAGGAGCGGTTGCTTTTT GTTACTGTGTGAAAAGGGGTTTTTATAAGGTTGAACCCTCAACTTTTGTTTGAAATGCCA GGGTGATTCCTGCTGTGATTTGTCTCCTCAAAGCTCTGCAGGGGACGGGCCTGCTGAGAA TCTGTCCCCATGCAACTCAGCACCGGTAAGAAGGCTAACAGAGAGGTAGCTGTGTTGTGG CTCAGCAGCAACGAACCCGAATAGTACCCATGAAGAGGTGGATTCGATCCCTGACCTCGC TCAGTGGGTTAAGGAACCGGCGATGCCATGAACTATGGTATAGTTCACAGAGGCGACTTG GATCCCACATTGCTGTGGCTGTGGTGTACACTGGCAGCTGCAGCTTCAATTAAACCCCTA GCCTGAGAACTTTCATATGCCACAGGTGCAGCCCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 511-602, - strand, RNAz p=0.761527 | |
| 1540-1690, - strand, RNAz p=0.999995 | |
| 2112-2302, - strand, RNAz p=0.992742 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 511-602, - strand, RNAz p=0.761527 | |
| 1540-1690, - strand, RNAz p=0.999995 | |
| 2112-2302, - strand, RNAz p=0.992742 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 175-329, gnl|bosTau2|chr11 (34419005-34419159) | |
| 175-329, gnl|canFam2|chr17 (42485328-42485074) | |
| 175-329, gnl|hg17|chr2 (85804275-85804550) | |
| 175-329, gnl|Hg17|chr2 (85804576-85804386) | |
| 175-329, gnl|loxAfr1|scaffold_3493 (46208-46494) | |
| 175-329, gnl|mm7|chr6 (72324984-72324769) | |
| 175-329, gnl|Mm7|chr6 (72324741-72324907) | |
| 175-329, gnl|monDom2|scaffold_68 (9582823-9583070) | |
| 175-329, gnl|rheMac2|chr13 (86239949-86240224) | |
| 175-329, gnl|rn3|chr4 (105855817-105855590) | |
| 413-602, gnl|bosTau2|chr11 (34422995-34423184) | |
| 413-602, gnl|canFam2|chr17 (42487826-42487611) | |
| 413-602, gnl|echTel1|scaffold_244985 (4461-4673) | |
| 413-602, gnl|hg17|chr2 (85802439-85802651) | |
| 413-602, gnl|Hg17|chr2 (85802634-85802445) | |
| 413-602, gnl|loxAfr1|scaffold_3493 (41632-41844) | |
| 413-602, gnl|mm7|chr6 (72327879-72327666) | |
| 413-602, gnl|Mm7|chr6 (72327681-72327871) | |
| 413-602, gnl|monDom2|scaffold_68 (9579142-9579362) | |
| 413-602, gnl|oryCun1|scaffold_200152 (46528-46740) | |
| 413-602, gnl|panTro1|chr12 (88666292-88666504) | |
| 413-602, gnl|rheMac2|chr13 (86238140-86238352) | |
| 413-602, gnl|rn3|chr4 (105858482-105858270) | |
| 1027-1498, gnl|bosTau2|chr11 (34425433-34425931) | |
| 1027-1498, gnl|Hg17|chr2 (85799978-85798819) | |
| 1540-1690, gnl|bosTau2|chr11 (34425945-34426096) | |
| 1540-1690, gnl|canFam2|chr17 (42490689-42490439) | |
| 1540-1690, gnl|dasNov1|scaffold_107442 (239-5) | |
| 1540-1690, gnl|hg17|chr2 (85798601-85798845) | |
| 1540-1690, gnl|Hg17|chr2 (85798802-85798655) | |
| 1540-1690, gnl|mm7|chr6 (72331640-72331433) | |
| 1540-1690, gnl|panTro1|chr12 (88672595-88672839) | |
| 1540-1690, gnl|rheMac2|chr13 (86234309-86234551) | |
| 1540-1690, gnl|rn3|chr4 (105862336-105862142) | |
| 1540-1690, gnl|xenTro1|scaffold_2065 (13214-13449) | |
| 1994-2453, gnl|bosTau2|chr11 (34426437-34426897) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-329, gnl|bosTau2|chr11 (34419005-34419159) | |
| 175-329, gnl|canFam2|chr17 (42485328-42485074) | |
| 175-329, gnl|hg17|chr2 (85804275-85804550) | |
| 175-329, gnl|Hg17|chr2 (85804576-85804386) | |
| 175-329, gnl|loxAfr1|scaffold_3493 (46208-46494) | |
| 175-329, gnl|mm7|chr6 (72324984-72324769) | |
| 175-329, gnl|Mm7|chr6 (72324741-72324907) | |
| 175-329, gnl|monDom2|scaffold_68 (9582823-9583070) | |
| 175-329, gnl|rheMac2|chr13 (86239949-86240224) | |
| 175-329, gnl|rn3|chr4 (105855817-105855590) | |
| 413-602, gnl|bosTau2|chr11 (34422995-34423184) | |
| 413-602, gnl|canFam2|chr17 (42487826-42487611) | |
| 413-602, gnl|echTel1|scaffold_244985 (4461-4673) | |
| 413-602, gnl|hg17|chr2 (85802439-85802651) | |
| 413-602, gnl|Hg17|chr2 (85802634-85802445) | |
| 413-602, gnl|loxAfr1|scaffold_3493 (41632-41844) | |
| 413-602, gnl|mm7|chr6 (72327879-72327666) | |
| 413-602, gnl|Mm7|chr6 (72327681-72327871) | |
| 413-602, gnl|monDom2|scaffold_68 (9579142-9579362) | |
| 413-602, gnl|oryCun1|scaffold_200152 (46528-46740) | |
| 413-602, gnl|panTro1|chr12 (88666292-88666504) | |
| 413-602, gnl|rheMac2|chr13 (86238140-86238352) | |
| 413-602, gnl|rn3|chr4 (105858482-105858270) | |
| 1027-1498, gnl|bosTau2|chr11 (34425433-34425931) | |
| 1027-1498, gnl|Hg17|chr2 (85799978-85798819) | |
| 1540-1690, gnl|bosTau2|chr11 (34425945-34426096) | |
| 1540-1690, gnl|canFam2|chr17 (42490689-42490439) | |
| 1540-1690, gnl|dasNov1|scaffold_107442 (239-5) | |
| 1540-1690, gnl|hg17|chr2 (85798601-85798845) | |
| 1540-1690, gnl|Hg17|chr2 (85798802-85798655) | |
| 1540-1690, gnl|mm7|chr6 (72331640-72331433) | |
| 1540-1690, gnl|panTro1|chr12 (88672595-88672839) | |
| 1540-1690, gnl|rheMac2|chr13 (86234309-86234551) | |
| 1540-1690, gnl|rn3|chr4 (105862336-105862142) | |
| 1540-1690, gnl|xenTro1|scaffold_2065 (13214-13449) | |
| 1994-2453, gnl|bosTau2|chr11 (34426437-34426897) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (2.30017) | |
| clu (1.19646) | |
| liv (0.438853) | |
| elu (0.385356) | |
| fty (0.17584) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (2.30017) | |
| clu (1.19646) | |
| liv (0.438853) | |
| elu (0.385356) | |
| fty (0.17584) |