Ss1.1-Lng1-LNG010106C01.5
|
AGGCTTTTCTTTTTTTAAAATTTTTCTCCGTTGCAAAGAATGGTTCCTAAATTGTATGGG
AGCAATAGTATTTTTGATGTTTTAATGACATCTGTATACTCGTACTGTATTTTGTACTAC
AAGGCAGCTGTTTTCAATAATGTCCTGCTGTATTTACCTATGTGTTTTGAGTGTTTCTTT
CTTTGCTGCGGAGAACAAATCCCTCAATAGTTTTAGTAGTAAAGGAGCTGAGAAGCTAGC
TTTAGTAGGCTTGCAGAAACTGTTTAAGTTTCGAACTCTGAGGCAGCAATGAAAAATCAA
GGTTGCAGCTCTTAGTTGATTGCTGTCACTTTTTCGATTTCAAAACATGTATAATTCCTG
TATAGACCAACTTGTTTTCTTGCTTCAGCGGTGGTTCTCTTGCTCAGCTGCAGTGAGCCA
GTTCAATTTTGCAAAGGTGCAGTACCTCTCCTTTTTAAGGGGTTGGTTTATTCTTTCTTC
TTTTCTTTTTGTTTGGCTGAATTGCAGTAACTAGCCTTGCCTTTCTATTCTGTAGAAATG
ACAGGGTCTTCACAATCCTTCACCAGTGGCTACTAAGCTATAATTAGCTGAATAGAAAGA
ATGTGGAAGTGGTCTGAGGCATATAGAGTGTATGCCAAGAACACTGCCATATATGGCATC
AGCTTTGGTTACCAGAGAAATTTTCTTAGTCATTAGACCATATAACAGTAATATATCATA
TGTAAATCTTTAGATATCAATTTGAGAATCCTCCAAAAAAAGGAGCAAAGAATGCATAAG
CTATGTGTTGGAAAAGTAATTTATATTAAAATTTTGACCTGCCTATGTAAGATTAAGTGG
TAAATGTCATAGTGGTGGGTTTTTCAGTCTTAACCAATCTCAGAGGTTTGTTTCTCCTGC
AGGAGGCGGGTCCTGGCCTCTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGCTTTTCTTTTTTTAAAATTTTTCTCCGTTGCAAAGAATGGTTCCTAAATTGTATGGG
AGCAATAGTATTTTTGATGTTTTAATGACATCTGTATACTCGTACTGTATTTTGTACTAC
AAGGCAGCTGTTTTCAATAATGTCCTGCTGTATTTACCTATGTGTTTTGAGTGTTTCTTT
CTTTGCTGCGGAGAACAAATCCCTCAATAGTTTTAGTAGTAAAGGAGCTGAGAAGCTAGC
TTTAGTAGGCTTGCAGAAACTGTTTAAGTTTCGAACTCTGAGGCAGCAATGAAAAATCAA
GGTTGCAGCTCTTAGTTGATTGCTGTCACTTTTTCGATTTCAAAACATGTATAATTCCTG
TATAGACCAACTTGTTTTCTTGCTTCAGCGGTGGTTCTCTTGCTCAGCTGCAGTGAGCCA
GTTCAATTTTGCAAAGGTGCAGTACCTCTCCTTTTTAAGGGGTTGGTTTATTCTTTCTTC
TTTTCTTTTTGTTTGGCTGAATTGCAGTAACTAGCCTTGCCTTTCTATTCTGTAGAAATG
ACAGGGTCTTCACAATCCTTCACCAGTGGCTACTAAGCTATAATTAGCTGAATAGAAAGA
ATGTGGAAGTGGTCTGAGGCATATAGAGTGTATGCCAAGAACACTGCCATATATGGCATC
AGCTTTGGTTACCAGAGAAATTTTCTTAGTCATTAGACCATATAACAGTAATATATCATA
TGTAAATCTTTAGATATCAATTTGAGAATCCTCCAAAAAAAGGAGCAAAGAATGCATAAG
CTATGTGTTGGAAAAGTAATTTATATTAAAATTTTGACCTGCCTATGTAAGATTAAGTGG
TAAATGTCATAGTGGTGGGTTTTTCAGTCTTAACCAATCTCAGAGGTTTGTTTCTCCTGC
AGGAGGCGGGTCCTGGCCTCTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
588-682, + strand, RNAmicro p=0.968255 |
|
729-801, + strand, RNAmicro p=0.902784 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
588-682, + strand, RNAmicro p=0.968255 |
|
729-801, + strand, RNAmicro p=0.902784 |
|
199-709, BP435031 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435031.1|), blast E-value=0, identity=100% |
|
217-709, DKFZp586J1321_r1 586 (synonym (emb|AL047634.1|), blast E-value=0,
identity=94.52% |
|
217-709, DKFZp781M1299_r1 781 (synonym (emb|BX957184.1|), blast E-value=0,
identity=94.32% |
|
302-709, qq16f08.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE
(gb|AI334368.1|), blast E-value=0, identity=95.83% |
|
217-709, hr73b05.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE
(gb|BF115023.1|), blast E-value=0, identity=94.52% |
|
219-709, io54b07.y1 Human insulinoma Homo sapiens cDNA clone IMAGE
(gb|BU947776.1|), blast E-value=0, identity=94.3% |
|
527-792, BP435031 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435031.1|), blast E-value=0, identity=97.37% |
|
527-791, L0514F09-3 NIA Mouse Newborn Heart cDNA Library Mus musculus cDNA
(gb|BM122755.2|), blast E-value=0, identity=96.23% |
|
527-791, H4025D08-3 NIA Mouse 7.4K cDNA Clone Set Mus musculus cDNA clone
(gb|BQ553987.1|), blast E-value=0, identity=96.23% |
|
527-791, AGENCOURT_8930508 NIH_MGC_94 Mus musculus cDNA clone IMAGE
(gb|BQ946313.1|), blast E-value=0, identity=96.23% |
|
527-791, A0888A02-5 NIA Mouse E13.5 whole embryo cDNA library (Long) Mus
(gb|CN670055.1|), blast E-value=0, identity=96.23% |
|
527-792, UMC-pd10en3-013-e12 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987228.1|), blast E-value=0, identity=96.24% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
199-709, BP435031 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435031.1|), blast E-value=0, identity=100% |
|
217-709, DKFZp586J1321_r1 586 (synonym (emb|AL047634.1|), blast E-value=0,
identity=94.52% |
|
217-709, DKFZp781M1299_r1 781 (synonym (emb|BX957184.1|), blast E-value=0,
identity=94.32% |
|
302-709, qq16f08.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE
(gb|AI334368.1|), blast E-value=0, identity=95.83% |
|
217-709, hr73b05.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE
(gb|BF115023.1|), blast E-value=0, identity=94.52% |
|
219-709, io54b07.y1 Human insulinoma Homo sapiens cDNA clone IMAGE
(gb|BU947776.1|), blast E-value=0, identity=94.3% |
|
527-792, BP435031 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435031.1|), blast E-value=0, identity=97.37% |
|
527-791, L0514F09-3 NIA Mouse Newborn Heart cDNA Library Mus musculus cDNA
(gb|BM122755.2|), blast E-value=0, identity=96.23% |
|
527-791, H4025D08-3 NIA Mouse 7.4K cDNA Clone Set Mus musculus cDNA clone
(gb|BQ553987.1|), blast E-value=0, identity=96.23% |
|
527-791, AGENCOURT_8930508 NIH_MGC_94 Mus musculus cDNA clone IMAGE
(gb|BQ946313.1|), blast E-value=0, identity=96.23% |
|
527-791, A0888A02-5 NIA Mouse E13.5 whole embryo cDNA library (Long) Mus
(gb|CN670055.1|), blast E-value=0, identity=96.23% |
|
527-792, UMC-pd10en3-013-e12 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987228.1|), blast E-value=0, identity=96.24% |
|
5' of NM_033224, + |
|
5' of NM_033224, - |
Human gene identifier and UTR site,
human gene reading direction
|
5' of NM_033224, + |
|
5' of NM_033224, - |
|
3-921, gnl|bosTau2|chr4 (43134134-43133214) |
|
3-921, gnl|canFam2|chrUn (25986681-25985852) |
|
3-921, gnl|echTel1|scaffold_190747 (5573-6372) |
|
3-921, gnl|hg17|chr7 (44694118-44694900) |
|
3-921, gnl|Hg17|chr7 (44695220-44694318) |
|
3-921, gnl|loxAfr1|scaffold_9824 (40264-41032) |
|
3-921, gnl|mm7|chr11 (6423760-6424550) |
|
3-921, gnl|Mm7|chr11 (6424867-6423958) |
|
3-921, gnl|monDom2|scaffold_1 (154841875-154840996) |
|
3-921, gnl|oryCun1|scaffold_208397 (51227-52004) |
|
3-921, gnl|panTro1|chr6 (46213258-46214040) |
|
3-921, gnl|rheMac2|chr3 (81461934-81461160) |
|
3-921, gnl|rn3|chr14 (87247833-87248623) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-921, gnl|bosTau2|chr4 (43134134-43133214) |
|
3-921, gnl|canFam2|chrUn (25986681-25985852) |
|
3-921, gnl|echTel1|scaffold_190747 (5573-6372) |
|
3-921, gnl|hg17|chr7 (44694118-44694900) |
|
3-921, gnl|Hg17|chr7 (44695220-44694318) |
|
3-921, gnl|loxAfr1|scaffold_9824 (40264-41032) |
|
3-921, gnl|mm7|chr11 (6423760-6424550) |
|
3-921, gnl|Mm7|chr11 (6424867-6423958) |
|
3-921, gnl|monDom2|scaffold_1 (154841875-154840996) |
|
3-921, gnl|oryCun1|scaffold_208397 (51227-52004) |
|
3-921, gnl|panTro1|chr6 (46213258-46214040) |
|
3-921, gnl|rheMac2|chr3 (81461934-81461160) |
|
3-921, gnl|rn3|chr14 (87247833-87248623) |
|
spl (0.286369) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
sug (0.127291) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
spl (0.286369) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
sug (0.127291) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
ldo (0.0970026) |
