Ss1.1-Lng1-LNG010106C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGCACACTTCCGCTTCCGGTCCGTGCCCTTGGGGCTCCGTGTCCTGCGGATCTGGTTTC TGCTACCTGGTTTGCAGCCGGGAAACATGGCGGCGGCGGCGGCTGCAAGGGGCTGTTGGC GGGGGCTCGTGGGGCCCGCGGCGGTGGCTAGGGTGTCCGGGCGACCCTCGGTGCTTTTGC TGCCTGTGAGGAAGGAAAGCGCTGCGGCCGACACGCGCCCCACTATCAGACCACGGAATG ATGTGGTCCACAAGCAGCTCTCAGCTTTTGGACAGTATGTGGCCGAAATCCTGCCCAAGT ATGTCCAGCAAGTTCAGGTGTCCTGCTTCAATGAGTTAGAGATTTTTATCCATCCTGATG GAGTCATCCCAGTGCTGACTTTCCTCAGGGATCACACTAACGCACAGTTCAAATCCTTGG CTGACCTGACAGCAGTGGATGTACCTACCCGGCAGAACCGTTTCGAGATTGTTTACAACC TGCTCTCTTTGCGCTTCAACTCCCGGATCCGTGTGAAGACCTATACAGATGAGCTGACGC CCATTGAGTCTTCTGTGACTGTGTACAAGGCAGCCAACTGGTATGAGAGGGAGATCTGGG ACATGTTTGGAGTCTTCTTTGCTAACCACCCTGACCTAAGAAGGATCCTGACAGACTATG GCTTTGAGGGACATCCTTTCCGGAAAGATTTCCCCCTGTCTGGCTATGTTGAGTTGCGCT ACGATGATGAGGTGAAGCGGGTGGTGGCCGAGCCAGTGGAGTTGGCCCAAGAGTTCCGCA AGTTTGATCTAAACAGCCCGTGGGAGGCTTTCCCTGCCTATCGCCAGCCCCCTGAGGATC TCAAGCTTGAAGCCGGAGACAAGAAACCTGAAACCAAGTAGTTCCAGGGAAGGCATATGT ACCCTAGCAAGCGCCTTATCTGTAATTGAGTGTCCCTGTAAATAAAATCCTGCTTAGACA CACTACTTCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGCACACTTCCGCTTCCGGTCCGTGCCCTTGGGGCTCCGTGTCCTGCGGATCTGGTTTC TGCTACCTGGTTTGCAGCCGGGAAACATGGCGGCGGCGGCGGCTGCAAGGGGCTGTTGGC GGGGGCTCGTGGGGCCCGCGGCGGTGGCTAGGGTGTCCGGGCGACCCTCGGTGCTTTTGC TGCCTGTGAGGAAGGAAAGCGCTGCGGCCGACACGCGCCCCACTATCAGACCACGGAATG ATGTGGTCCACAAGCAGCTCTCAGCTTTTGGACAGTATGTGGCCGAAATCCTGCCCAAGT ATGTCCAGCAAGTTCAGGTGTCCTGCTTCAATGAGTTAGAGATTTTTATCCATCCTGATG GAGTCATCCCAGTGCTGACTTTCCTCAGGGATCACACTAACGCACAGTTCAAATCCTTGG CTGACCTGACAGCAGTGGATGTACCTACCCGGCAGAACCGTTTCGAGATTGTTTACAACC TGCTCTCTTTGCGCTTCAACTCCCGGATCCGTGTGAAGACCTATACAGATGAGCTGACGC CCATTGAGTCTTCTGTGACTGTGTACAAGGCAGCCAACTGGTATGAGAGGGAGATCTGGG ACATGTTTGGAGTCTTCTTTGCTAACCACCCTGACCTAAGAAGGATCCTGACAGACTATG GCTTTGAGGGACATCCTTTCCGGAAAGATTTCCCCCTGTCTGGCTATGTTGAGTTGCGCT ACGATGATGAGGTGAAGCGGGTGGTGGCCGAGCCAGTGGAGTTGGCCCAAGAGTTCCGCA AGTTTGATCTAAACAGCCCGTGGGAGGCTTTCCCTGCCTATCGCCAGCCCCCTGAGGATC TCAAGCTTGAAGCCGGAGACAAGAAACCTGAAACCAAGTAGTTCCAGGGAAGGCATATGT ACCCTAGCAAGCGCCTTATCTGTAATTGAGTGTCCCTGTAAATAAAATCCTGCTTAGACA CACTACTTCCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 805-921, - strand, RNAz p=0.529041 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 805-921, - strand, RNAz p=0.529041 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 314-467, gnl|bosTau2|chr15 (48764805-48764652) | |
| 314-467, gnl|canFam2|chr18 (45108563-45108375) | |
| 314-467, gnl|danRer3|chr7 (28788039-28788202) | |
| 314-467, gnl|dasNov1|scaffold_2577 (149167-149356) | |
| 314-467, gnl|echTel1|scaffold_308749 (227-36) | |
| 314-467, gnl|fr1|chrUn (232729336-232729180) | |
| 314-467, gnl|galGal2|chr5 (20085458-20085286) | |
| 314-467, gnl|hg17|chr11 (47558940-47559127) | |
| 314-467, gnl|Hg17|chr11 (47558959-47559112) | |
| 314-467, gnl|loxAfr1|scaffold_9590 (43341-43152) | |
| 314-467, gnl|mm7|chr2 (90753254-90753062) | |
| 314-467, gnl|Mm7|chr2 (90753232-90753079) | |
| 314-467, gnl|monDom2|scaffold_33 (13436116-13436295) | |
| 314-467, gnl|oryCun1|scaffold_185831 (55210-55382) | |
| 314-467, gnl|panTro1|chr9 (48081230-48081417) | |
| 314-467, gnl|rheMac2|chr14 (24531214-24531027) | |
| 314-467, gnl|rn3|chr3 (75157413-75157223) | |
| 314-467, gnl|tetNig1|chrUn_random (6858071-6858247) | |
| 314-467, gnl|xenTro1|scaffold_1809 (20133-20310) | |
| 712-971, gnl|bosTau2|chr15 (48761994-48761737) | |
| 712-971, gnl|canFam2|chr18 (45104386-45104195) | |
| 712-971, gnl|danRer3|chr7 (28792665-28792829) | |
| 712-971, gnl|dasNov1|scaffold_2577 (151761-151953) | |
| 712-971, gnl|echTel1|scaffold_312833 (89536-89343) | |
| 712-971, gnl|fr1|chrUn (232728196-232728003) | |
| 712-971, gnl|galGal2|chr5 (20082320-20082124) | |
| 712-971, gnl|hg17|chr11 (47562420-47562614) | |
| 712-971, gnl|Hg17|chr11 (47562440-47562699) | |
| 712-971, gnl|loxAfr1|scaffold_9590 (40657-40463) | |
| 712-971, gnl|mm7|chr2 (90745617-90745423) | |
| 712-971, gnl|Mm7|chr2 (90745595-90745342) | |
| 712-971, gnl|monDom2|scaffold_33 (13438997-13439188) | |
| 712-971, gnl|oryCun1|scaffold_185831 (58794-58987) | |
| 712-971, gnl|panTro1|chr9 (48084852-48085046) | |
| 712-971, gnl|rheMac2|chr14 (24527609-24527415) | |
| 712-971, gnl|rn3|chr3 (75153025-75152833) | |
| 712-971, gnl|tetNig1|chrUn_random (6858863-6859049) | |
| 712-971, gnl|xenTro1|scaffold_1809 (21723-21906) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 314-467, gnl|bosTau2|chr15 (48764805-48764652) | |
| 314-467, gnl|canFam2|chr18 (45108563-45108375) | |
| 314-467, gnl|danRer3|chr7 (28788039-28788202) | |
| 314-467, gnl|dasNov1|scaffold_2577 (149167-149356) | |
| 314-467, gnl|echTel1|scaffold_308749 (227-36) | |
| 314-467, gnl|fr1|chrUn (232729336-232729180) | |
| 314-467, gnl|galGal2|chr5 (20085458-20085286) | |
| 314-467, gnl|hg17|chr11 (47558940-47559127) | |
| 314-467, gnl|Hg17|chr11 (47558959-47559112) | |
| 314-467, gnl|loxAfr1|scaffold_9590 (43341-43152) | |
| 314-467, gnl|mm7|chr2 (90753254-90753062) | |
| 314-467, gnl|Mm7|chr2 (90753232-90753079) | |
| 314-467, gnl|monDom2|scaffold_33 (13436116-13436295) | |
| 314-467, gnl|oryCun1|scaffold_185831 (55210-55382) | |
| 314-467, gnl|panTro1|chr9 (48081230-48081417) | |
| 314-467, gnl|rheMac2|chr14 (24531214-24531027) | |
| 314-467, gnl|rn3|chr3 (75157413-75157223) | |
| 314-467, gnl|tetNig1|chrUn_random (6858071-6858247) | |
| 314-467, gnl|xenTro1|scaffold_1809 (20133-20310) | |
| 712-971, gnl|bosTau2|chr15 (48761994-48761737) | |
| 712-971, gnl|canFam2|chr18 (45104386-45104195) | |
| 712-971, gnl|danRer3|chr7 (28792665-28792829) | |
| 712-971, gnl|dasNov1|scaffold_2577 (151761-151953) | |
| 712-971, gnl|echTel1|scaffold_312833 (89536-89343) | |
| 712-971, gnl|fr1|chrUn (232728196-232728003) | |
| 712-971, gnl|galGal2|chr5 (20082320-20082124) | |
| 712-971, gnl|hg17|chr11 (47562420-47562614) | |
| 712-971, gnl|Hg17|chr11 (47562440-47562699) | |
| 712-971, gnl|loxAfr1|scaffold_9590 (40657-40463) | |
| 712-971, gnl|mm7|chr2 (90745617-90745423) | |
| 712-971, gnl|Mm7|chr2 (90745595-90745342) | |
| 712-971, gnl|monDom2|scaffold_33 (13438997-13439188) | |
| 712-971, gnl|oryCun1|scaffold_185831 (58794-58987) | |
| 712-971, gnl|panTro1|chr9 (48084852-48085046) | |
| 712-971, gnl|rheMac2|chr14 (24527609-24527415) | |
| 712-971, gnl|rn3|chr3 (75153025-75152833) | |
| 712-971, gnl|tetNig1|chrUn_random (6858863-6859049) | |
| 712-971, gnl|xenTro1|scaffold_1809 (21723-21906) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| hlv (0.974795) | |
| col (0.585023) | |
| ste (0.540833) | |
| nje (0.49776) | |
| ldo (0.485013) | |
| tbr (0.462535) | |
| nms (0.427716) | |
| hea (0.408998) | |
| elu (0.385356) | |
| sto (0.359648) | |
| ton (0.351) | |
| csp (0.322373) | |
| sme (0.305437) | |
| hyp (0.285673) | |
| che (0.272628) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| pgl (0.236967) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.974795) | |
| col (0.585023) | |
| ste (0.540833) | |
| nje (0.49776) | |
| ldo (0.485013) | |
| tbr (0.462535) | |
| nms (0.427716) | |
| hea (0.408998) | |
| elu (0.385356) | |
| sto (0.359648) | |
| ton (0.351) | |
| csp (0.322373) | |
| sme (0.305437) | |
| hyp (0.285673) | |
| che (0.272628) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| pgl (0.236967) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| jej (0.0989218) |