Non-Coding RNA Search

Ss1.1-Lng1-LNG010108E07.5

Sequence:


               
               GAAAGATCTCCCAAAATTGAACGAGCTGCTTTAGATGGAACAGAACGGGAGGTCCTCTTT
TTCAGTGGCTTAAGTAAACCAATTGCTTTAGCTCTTGATAGCAGATTGGGCAAACTCTTT
TGGGCTGATTCAGATCTCCGGCGGATTGAAAGCAGTGATCTCTCAGGTGCCAATCGGATA
GTATTAGAAGACTCCAATATCTTGCAGCCTGTGGGACTGACTGTGTTTGAAAATTGGCTA
TATTGGATTGATAAACAGCAGCAGATGATTGAAAAAATTGACATGACAGGTCGAGAGGGT
AGAACCAAAGTCCAGGCTCGAATTGCCCAGCTTAGTGACATTCATGCAGTAAAGGAACTG
AATCTTCAGGAATACAGACAGCACCCTTGTGCTCAGGATAATGGTGGCTGTTCACATATT
TGTCTTGTAAAGGGAGATGGTACTACAAGGTGCTCTTGCCCAATGCACTTGGTTCTGCTT
CAGGATGAGCTATTATGTGGAGAACCCCCAACGTGTTCTCCTCAGCAGTTTACGTGTTTC
ACGGGGGAAATCGACTGTATCCCTGTGGCTTGGCGGTGCGATGGGTTTACTGAATGTGAA
GACCACAGTGATGAGCTCAATTGTCCTGTGTGCTCCGAGTCCCAGTTCCAGTGTGCCAGT
GGGCAGTGTATTGATGGTGCCCTCCGATGCAACGGAGACGCAAACTGCCAGGATAAATCA
GATGAGAAGAACTGTGAAGTGCTTTGTTTAATTGATCAGTTCCGCTGTGCCAATGGTCAG
TGCATTGGAAAACACAAGAAATGTGATCATAATTTGGATTGCAGTGACAAATCGGATGAA
CTGGATTGTTATCCAACAGAGGAGCCAGCACCACAGGCCACCAATACAGTTGGTTCAGTT
ATTGGCGTAATTGTCACCATTTTTGTGTCTGGAACTATATACTTCATCTGCCAGAGGATG
TTGTGTCCACGTATGAAGGGAGATGGGGAAACCATGACTAATGATTATGTAGTTCATGGA
CCAGCTTCTGTGCCCCTTGGTTATGTGCCACACCCAGGCTCTTTGTCAGGATCTCTTCCA
GGAATGTCTCGAGGTAAATCGATGATCAGCTCCCTTAGCATCATGGGGGGAAGCAGTGGA
CCCCCTTATGACCGAGCTCATGTCACAGGAGCATCATCAAGCAGTTCCTCAAGCACCAAA
GGCACTTACTTCCCTGCAATTTTGAACCCTCCACCATCCCCAGCCACAGAGCGATCACAT
TACACTATGGAATTCGGTTATTCTTCAAACAGTCCTTCCACTCATAGGTCCTACAGCTAC
AGGCCATACAGTTACCGGCACTTTGCACCCCCCACCACTCCTTGCAGCACAGATGTTTGT
GACAGTGACTATGCTCCCAGCCGGAGAATGACCTCAGTGGCGACGGCCAAGGGCTACACC
AGTGACTTGAACTATGACTCAGAGCCTGTGCCCCCACCTCCCACACCCCGAAGCCAATAC
TTGTCAGCAGAAGAGAACTATGAAAGCTGCCCACCTTCTCCGTACACAGAGAGGAGCTAC
TCTCATCACCTCTACCCACCGCCGCCCTCTCCTTGCACAGACTCCTCCTGAGGAGGGGCC
CTCCTCCTCTGACTGCCTCCAACACAAAAGTGTAAATACCAATTTGCTTGAGATCTGGAG
GGGGGGAGGGAGCTATTAGAGAAGGAAGAGGCAGACCATGTACAGTTAAAAATTATAAAT
GGGGTAGGGAATACTGGAGATATTTGTACAGAAGGAAGAGATATTTATATATTTTCTTAA
AACAGCAGATTTGCTGCTTGTGCCATAAAAATTTGTATAAAAATAAATTTGTACTAAAAG
TTTTATTTTTGCAAACTAAATACACAAAGCATGCCTTAAACCCAGTGAAGTGACTGAGTA
CAAAGGAAACAGGAATAATAAAGGCATCACTGACTAGGAATGTCTGGGCTTTATTGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGATCTCCCAAAATTGAACGAGCTGCTTTAGATGGAACAGAACGGGAGGTCCTCTTT
TTCAGTGGCTTAAGTAAACCAATTGCTTTAGCTCTTGATAGCAGATTGGGCAAACTCTTT
TGGGCTGATTCAGATCTCCGGCGGATTGAAAGCAGTGATCTCTCAGGTGCCAATCGGATA
GTATTAGAAGACTCCAATATCTTGCAGCCTGTGGGACTGACTGTGTTTGAAAATTGGCTA
TATTGGATTGATAAACAGCAGCAGATGATTGAAAAAATTGACATGACAGGTCGAGAGGGT
AGAACCAAAGTCCAGGCTCGAATTGCCCAGCTTAGTGACATTCATGCAGTAAAGGAACTG
AATCTTCAGGAATACAGACAGCACCCTTGTGCTCAGGATAATGGTGGCTGTTCACATATT
TGTCTTGTAAAGGGAGATGGTACTACAAGGTGCTCTTGCCCAATGCACTTGGTTCTGCTT
CAGGATGAGCTATTATGTGGAGAACCCCCAACGTGTTCTCCTCAGCAGTTTACGTGTTTC
ACGGGGGAAATCGACTGTATCCCTGTGGCTTGGCGGTGCGATGGGTTTACTGAATGTGAA
GACCACAGTGATGAGCTCAATTGTCCTGTGTGCTCCGAGTCCCAGTTCCAGTGTGCCAGT
GGGCAGTGTATTGATGGTGCCCTCCGATGCAACGGAGACGCAAACTGCCAGGATAAATCA
GATGAGAAGAACTGTGAAGTGCTTTGTTTAATTGATCAGTTCCGCTGTGCCAATGGTCAG
TGCATTGGAAAACACAAGAAATGTGATCATAATTTGGATTGCAGTGACAAATCGGATGAA
CTGGATTGTTATCCAACAGAGGAGCCAGCACCACAGGCCACCAATACAGTTGGTTCAGTT
ATTGGCGTAATTGTCACCATTTTTGTGTCTGGAACTATATACTTCATCTGCCAGAGGATG
TTGTGTCCACGTATGAAGGGAGATGGGGAAACCATGACTAATGATTATGTAGTTCATGGA
CCAGCTTCTGTGCCCCTTGGTTATGTGCCACACCCAGGCTCTTTGTCAGGATCTCTTCCA
GGAATGTCTCGAGGTAAATCGATGATCAGCTCCCTTAGCATCATGGGGGGAAGCAGTGGA
CCCCCTTATGACCGAGCTCATGTCACAGGAGCATCATCAAGCAGTTCCTCAAGCACCAAA
GGCACTTACTTCCCTGCAATTTTGAACCCTCCACCATCCCCAGCCACAGAGCGATCACAT
TACACTATGGAATTCGGTTATTCTTCAAACAGTCCTTCCACTCATAGGTCCTACAGCTAC
AGGCCATACAGTTACCGGCACTTTGCACCCCCCACCACTCCTTGCAGCACAGATGTTTGT
GACAGTGACTATGCTCCCAGCCGGAGAATGACCTCAGTGGCGACGGCCAAGGGCTACACC
AGTGACTTGAACTATGACTCAGAGCCTGTGCCCCCACCTCCCACACCCCGAAGCCAATAC
TTGTCAGCAGAAGAGAACTATGAAAGCTGCCCACCTTCTCCGTACACAGAGAGGAGCTAC
TCTCATCACCTCTACCCACCGCCGCCCTCTCCTTGCACAGACTCCTCCTGAGGAGGGGCC
CTCCTCCTCTGACTGCCTCCAACACAAAAGTGTAAATACCAATTTGCTTGAGATCTGGAG
GGGGGGAGGGAGCTATTAGAGAAGGAAGAGGCAGACCATGTACAGTTAAAAATTATAAAT
GGGGTAGGGAATACTGGAGATATTTGTACAGAAGGAAGAGATATTTATATATTTTCTTAA
AACAGCAGATTTGCTGCTTGTGCCATAAAAATTTGTATAAAAATAAATTTGTACTAAAAG
TTTTATTTTTGCAAACTAAATACACAAAGCATGCCTTAAACCCAGTGAAGTGACTGAGTA
CAAAGGAAACAGGAATAATAAAGGCATCACTGACTAGGAATGTCTGGGCTTTATTGATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-185, gnl|bosTau2|chr5 (58608440-58608624)
               

               
               1-185, gnl|Hg17|chr12 (12191732-12191541)
               

               
               1-185, gnl|Mm7|chr6 (134481148-134480960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-185, gnl|bosTau2|chr5 (58608440-58608624)
               

               
               1-185, gnl|Hg17|chr12 (12191732-12191541)
               

               
               1-185, gnl|Mm7|chr6 (134481148-134480960)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	1-185, gnl\|bosTau2\|chr5 (58608440-58608624)
	1-185, gnl\|Hg17\|chr12 (12191732-12191541)
	1-185, gnl\|Mm7\|chr6 (134481148-134480960)

	cmu (0.186393)
	cki (0.165235)
	liv (0.146284)
	hyp (0.142837)
	cst (0.140036)
	che (0.136314)
	ese (0.126502)
	spc (0.113366)