Ss1.1-Lng1-LNG010108H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCTTTGCTTTGGGGGTTGGGGGAAGATGAGCTTCTCACGGAACCTCTCTCCAGCTTC TCTTTCCCCCGCGGCACCCCTCATGCTCTGACGAGGCAGGGAACCCGGCTTCTCCCTGAG CAGCTGTGCTGGGGAGTCCACACCCGGATGAGCTCTCCCCTCTGGCATCGAAGACACATC CAGCAATTAAGGAAGAGCCAGGAAACGGGCAGACAGGCTGGCGAGCTAATGATGGTTGAG AGAAGGCTTGGAAGGAGAAGCTGAAGCCAGAGAGGGTCCGGGGATAATGGGCATGACCAC GCCGGCCATCTCAGAGGTCAGAGGGAGGACCTCACAGCCCAGCACTCTACAGGGAACCCT CAGCACCCTGGACAGAGCTAAAGACCAGAACAGCAGCATCTTTTCTGGGTTTGCGGGACT CCTCTCCATCCTCCTCGTTGTTGCAGTGTTTTGTGTCCTGTGGAACTGGAATAAATGGAA GAAACGGCAAGTTCCTTACCTCCAGGTTACCGTCATGCCCTTGCTGACTCTGCCTCGACC CAGACAGCGAGCCAAAAACATTTATGACCTCTTGCCTCGAAGACAAGAAGAGCGGGGAAG ACATCCTTCAAGGAGTATCCGTGTTTTCAGTACCGAGAGCCTCCTCTCCAGAACTTCTGA CAGCCCTCCCTCTGATCATATGCCCTCCGGAGCAGGCGATGCCCTCCAATTGCACAGAAC CCACACTCTTGCCATGGGGTACGCAGTGGGCATCTATGACAATGCCGTTGGTTCCCAGAT GTGTGGGAACCTTGCACCCTCAGCACACTACGTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCTTTGCTTTGGGGGTTGGGGGAAGATGAGCTTCTCACGGAACCTCTCTCCAGCTTC TCTTTCCCCCGCGGCACCCCTCATGCTCTGACGAGGCAGGGAACCCGGCTTCTCCCTGAG CAGCTGTGCTGGGGAGTCCACACCCGGATGAGCTCTCCCCTCTGGCATCGAAGACACATC CAGCAATTAAGGAAGAGCCAGGAAACGGGCAGACAGGCTGGCGAGCTAATGATGGTTGAG AGAAGGCTTGGAAGGAGAAGCTGAAGCCAGAGAGGGTCCGGGGATAATGGGCATGACCAC GCCGGCCATCTCAGAGGTCAGAGGGAGGACCTCACAGCCCAGCACTCTACAGGGAACCCT CAGCACCCTGGACAGAGCTAAAGACCAGAACAGCAGCATCTTTTCTGGGTTTGCGGGACT CCTCTCCATCCTCCTCGTTGTTGCAGTGTTTTGTGTCCTGTGGAACTGGAATAAATGGAA GAAACGGCAAGTTCCTTACCTCCAGGTTACCGTCATGCCCTTGCTGACTCTGCCTCGACC CAGACAGCGAGCCAAAAACATTTATGACCTCTTGCCTCGAAGACAAGAAGAGCGGGGAAG ACATCCTTCAAGGAGTATCCGTGTTTTCAGTACCGAGAGCCTCCTCTCCAGAACTTCTGA CAGCCCTCCCTCTGATCATATGCCCTCCGGAGCAGGCGATGCCCTCCAATTGCACAGAAC CCACACTCTTGCCATGGGGTACGCAGTGGGCATCTATGACAATGCCGTTGGTTCCCAGAT GTGTGGGAACCTTGCACCCTCAGCACACTACGTCAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 491-600, - strand, RNAz p=0.871155 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 491-600, - strand, RNAz p=0.871155 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 181-374, gnl|bosTau2|chr16 (175531-175725) | |
| 181-374, gnl|Hg17|chr1 (200466260-200466438) | |
| 181-374, gnl|Mm7|chr1 (133578792-133578607) | |
| 486-600, gnl|bosTau2|chr16 (178995-179109) | |
| 486-600, gnl|canFam2|chr38 (3433002-3433184) | |
| 486-600, gnl|dasNov1|scaffold_68319 (5707-5871) | |
| 486-600, gnl|echTel1|scaffold_292807 (9439-9625) | |
| 486-600, gnl|hg17|chr1 (200472095-200472277) | |
| 486-600, gnl|Hg17|chr1 (200472152-200472266) | |
| 486-600, gnl|loxAfr1|scaffold_5435 (84127-83948) | |
| 486-600, gnl|mm7|chr1 (133573469-133573313) | |
| 486-600, gnl|Mm7|chr1 (133573427-133573319) | |
| 486-600, gnl|monDom2|scaffold_13 (4000009-4000210) | |
| 486-600, gnl|oryCun1|scaffold_140397 (13554-13744) | |
| 486-600, gnl|panTro1|chr1 (183406015-183406197) | |
| 486-600, gnl|rheMac2|chr1 (166656062-166655880) | |
| 486-600, gnl|rn3|chr13 (46624583-46624425) | |
| 682-816, gnl|bosTau2|chr16 (181684-181818) | |
| 682-816, gnl|canFam2|chr38 (3435776-3436017) | |
| 682-816, gnl|dasNov1|scaffold_68319 (8303-8543) | |
| 682-816, gnl|echTel1|scaffold_292807 (15695-15937) | |
| 682-816, gnl|hg17|chr1 (200474634-200474875) | |
| 682-816, gnl|Hg17|chr1 (200474659-200474793) | |
| 682-816, gnl|loxAfr1|scaffold_5435 (78174-77933) | |
| 682-816, gnl|mm7|chr1_random (685354-685589) | |
| 682-816, gnl|Mm7|chr1_random (685373-685507) | |
| 682-816, gnl|monDom2|scaffold_13 (4003798-4004039) | |
| 682-816, gnl|oryCun1|scaffold_140397 (16545-16816) | |
| 682-816, gnl|panTro1|chr1 (183408559-183408800) | |
| 682-816, gnl|rheMac2|chr1 (166653457-166653216) | |
| 682-816, gnl|rn3|chr13 (46621641-46621407) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-374, gnl|bosTau2|chr16 (175531-175725) | |
| 181-374, gnl|Hg17|chr1 (200466260-200466438) | |
| 181-374, gnl|Mm7|chr1 (133578792-133578607) | |
| 486-600, gnl|bosTau2|chr16 (178995-179109) | |
| 486-600, gnl|canFam2|chr38 (3433002-3433184) | |
| 486-600, gnl|dasNov1|scaffold_68319 (5707-5871) | |
| 486-600, gnl|echTel1|scaffold_292807 (9439-9625) | |
| 486-600, gnl|hg17|chr1 (200472095-200472277) | |
| 486-600, gnl|Hg17|chr1 (200472152-200472266) | |
| 486-600, gnl|loxAfr1|scaffold_5435 (84127-83948) | |
| 486-600, gnl|mm7|chr1 (133573469-133573313) | |
| 486-600, gnl|Mm7|chr1 (133573427-133573319) | |
| 486-600, gnl|monDom2|scaffold_13 (4000009-4000210) | |
| 486-600, gnl|oryCun1|scaffold_140397 (13554-13744) | |
| 486-600, gnl|panTro1|chr1 (183406015-183406197) | |
| 486-600, gnl|rheMac2|chr1 (166656062-166655880) | |
| 486-600, gnl|rn3|chr13 (46624583-46624425) | |
| 682-816, gnl|bosTau2|chr16 (181684-181818) | |
| 682-816, gnl|canFam2|chr38 (3435776-3436017) | |
| 682-816, gnl|dasNov1|scaffold_68319 (8303-8543) | |
| 682-816, gnl|echTel1|scaffold_292807 (15695-15937) | |
| 682-816, gnl|hg17|chr1 (200474634-200474875) | |
| 682-816, gnl|Hg17|chr1 (200474659-200474793) | |
| 682-816, gnl|loxAfr1|scaffold_5435 (78174-77933) | |
| 682-816, gnl|mm7|chr1_random (685354-685589) | |
| 682-816, gnl|Mm7|chr1_random (685373-685507) | |
| 682-816, gnl|monDom2|scaffold_13 (4003798-4004039) | |
| 682-816, gnl|oryCun1|scaffold_140397 (16545-16816) | |
| 682-816, gnl|panTro1|chr1 (183408559-183408800) | |
| 682-816, gnl|rheMac2|chr1 (166653457-166653216) | |
| 682-816, gnl|rn3|chr13 (46621641-46621407) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) |