Non-Coding RNA Search

Ss1.1-Lng1-LNG010109A05.5

Sequence:


               
               AGGTAAACAATGCATATTCTTCTCTCTGCTCACATTTATCGAGGCCCACAAGTATACCTT
ACAGTATCAGGCATTTCCCAGCCAACTAGCTGATGCTGACCTTGAAATGTCTATGAACAA
ATGCTACAGGACTGATAGCGGTCCTGCAGCTTAGCTTTTGCCCTTTGAGGGCCTGGACTT
TCCCAGCTGTTGTCGTTTTGTTTTTTGTGAGTGGTTATCATGGGGAGTTTGGTACTGTGC
CGTTTCCAGCACACTTCCTGAGAAGCCTGCATGCATGTTCTAGAACCTGCTCTGCGTGGC
ATTTCAACAACCAGGTCTTCTCTTCAGCTTCCTCCCTGGGGAACCCATGCCTTTTAATGT
GTGCTCAGCTTTTCATTTCCTCCCATTTCTCATTATAGTTGTTGGCTTTAAGTTAAAATC
TATTAACTGGTTGCAAAATATTCTTTCTTCATCCAGTTCAATCTACTGCAGGGAACCTTT
AAAATGGTCTTATCTGATAAGCTTTCTAGGCATTTTCCCTCCCTAGAGTCTACCATCCAT
CAAGGCGGTCTCATCATCTGTCTGCTAAATTCCCTTGGATTGATGAGGGCCAAGTTAAAT
GGCAAATGGCCCCTCACCCTTTTCCAGTCTTCACACCTGGGAAATAACATGTGCGGCCAG
TGGGGCTAGCACAGTAGTAGCCTTGGCTGAGAAGGCAACATTCAGACACTGGAAAGGTGC
TTCATGTTCCTGTAAGGTTTGATGTTATGATTGATGAAGTAGAAAATGATTCTTGTAGAA
AAAATGGCATACCCCCACCACAGGCATGGATTAGCAGGAGCATTGAGAAAACTTTTCCGA
ATGATCTAGGTGAATACGCCTGAGCAGAGATTCACGTGGGTGGAACCTGTGATATCTTAT
TAGAGGGAATAAGAGGTATCAATATGAAAAAGCAGCCCTTTAAAAAAATTAAGGGAGCCA
CAGACTCTCGTTTATCTTTACAAAATGTAAAGGAAATTTTGAATACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTAAACAATGCATATTCTTCTCTCTGCTCACATTTATCGAGGCCCACAAGTATACCTT
ACAGTATCAGGCATTTCCCAGCCAACTAGCTGATGCTGACCTTGAAATGTCTATGAACAA
ATGCTACAGGACTGATAGCGGTCCTGCAGCTTAGCTTTTGCCCTTTGAGGGCCTGGACTT
TCCCAGCTGTTGTCGTTTTGTTTTTTGTGAGTGGTTATCATGGGGAGTTTGGTACTGTGC
CGTTTCCAGCACACTTCCTGAGAAGCCTGCATGCATGTTCTAGAACCTGCTCTGCGTGGC
ATTTCAACAACCAGGTCTTCTCTTCAGCTTCCTCCCTGGGGAACCCATGCCTTTTAATGT
GTGCTCAGCTTTTCATTTCCTCCCATTTCTCATTATAGTTGTTGGCTTTAAGTTAAAATC
TATTAACTGGTTGCAAAATATTCTTTCTTCATCCAGTTCAATCTACTGCAGGGAACCTTT
AAAATGGTCTTATCTGATAAGCTTTCTAGGCATTTTCCCTCCCTAGAGTCTACCATCCAT
CAAGGCGGTCTCATCATCTGTCTGCTAAATTCCCTTGGATTGATGAGGGCCAAGTTAAAT
GGCAAATGGCCCCTCACCCTTTTCCAGTCTTCACACCTGGGAAATAACATGTGCGGCCAG
TGGGGCTAGCACAGTAGTAGCCTTGGCTGAGAAGGCAACATTCAGACACTGGAAAGGTGC
TTCATGTTCCTGTAAGGTTTGATGTTATGATTGATGAAGTAGAAAATGATTCTTGTAGAA
AAAATGGCATACCCCCACCACAGGCATGGATTAGCAGGAGCATTGAGAAAACTTTTCCGA
ATGATCTAGGTGAATACGCCTGAGCAGAGATTCACGTGGGTGGAACCTGTGATATCTTAT
TAGAGGGAATAAGAGGTATCAATATGAAAAAGCAGCCCTTTAAAAAAATTAAGGGAGCCA
CAGACTCTCGTTTATCTTTACAAAATGTAAAGGAAATTTTGAATACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               561-680, + strand, RNAz p=0.883276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-680, + strand, RNAz p=0.883276

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               217-1004, gnl|bosTau2|chr1 (49000275-49001089)
               

               
               217-1004, gnl|Hg17|chr3 (190085467-190087140)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-1004, gnl|bosTau2|chr1 (49000275-49001089)
               

               
               217-1004, gnl|Hg17|chr3 (190085467-190087140)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	217-1004, gnl\|bosTau2\|chr1 (49000275-49001089)
	217-1004, gnl\|Hg17\|chr3 (190085467-190087140)