Ss1.1-Lng1-LNG010109D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGGGGGAGCATTTCTGCTGGCTCCAGAACTTTGGCCATCTATAAAGCTTAGCAGTGGA AATAAGGAAATTCTCAAGGAAGAGGAGCCATTGACCAGCACCAGAGAAAGGACAGCTCAT GACCAAACCATGTTGCCTAAAGTGGAGACCTTTGAAATTAATGAGTCAAAGCCCAAGAAA AGAAATGGGATGAACTGGTTCATGTTCCTGGTGGTCATCTACCTGATTCTGCTCACCGTG GGCACCGGGATGCTGGTGATGACAGTTCTGAAATTGCAGGAGCAGCTCCGGGCCCTGGTG ATCTACCCTCACAATGAAACGCTGGCCACGGAGGGGAGCTGGTCCTCTTTCCTCCAGAGC ATCCCTCCCCCAGCTGGGGATGCACCGAGACTGCAAATCCTGCAAACTCAGCTCACCCAG ATCTGCGCCAGGCAGGAGCAGTTACTGAGACGGGTGGACAACTGTACTCAGATCCCAGGC CCCCCAGGTCCCCAAGGCCCACCAGGAATCAAGGGAGAGACAGGAAGAAAAGGAGACATG GGCATGAAAGGGGACATGGGGCTCATGGGACCCCCCGGAGCCCGGGGGCATAAAGGTGAC TTGGGGATGCCCGGGTCCCCAGGTGTGGCTGGAGTTCCTGGACTCAAAGGAGATCAAGGA CAGCCTGGAACCAGGGGTCTTCCAGGCCTTCCAGGAGCTGCGGGATCCCCTGGTGCCAAG GGTGAGCCTGGCAGCCCTGGCCTCACTGGGCCAACAGGACCAGCAGGGAGTCCCGGGAGT CCAGGAGCCGAAGGCTTGAAAGGAAGCAAGGGGGACACAGGACTTCAAGGACAGAAAGGA ACAAAAGGAGAATCAGGATTTCCAGGCCCTGCAGGTCTGAAGGGAGAGAAGGGAAGCCGA GGCCTGGAAGGCTCCAGGGGTGCCCCTGGACTAGGTGGCCAAAAGGGAGAGCCCGGAGCC AAAGGATCTTCTGGGCTACAGGGAGCAAAGGGAGCAAAGGGTGAAAAAGGTGAATCCATG CTGTCTGTCAGGATTATCGGCTCCAGGAACCGAGGCCGAGCTGAAATTTTCTATAGCGGT GTCTGGGGGACAATTTGTGATGATGACTGGGACAATTCGGATGCCACTGTCTTCTGCCGC ATGCTGGGTTACTCCTCAGGAAGTGCCGTTTACAATGTGGGAGGAGGCACTGGGACCATC TGGCTGGACAATGTGGCATGTAAAGGGAGCGAATTTACCCTGTGGGACTGCGGCAAGAAT GCCTGGGGATCTCACAATTGCAACCACAATGAGGACGCAGGCGTGAACTGCAGCTGACCC CACAGCCCGACACCACTCTGTCCCTTGGGTGTCTGCAGCCCAGACTCAGCCCTGTGCTCT CTTGGATCTCCCTGGGGGTGGCTGAGCAGCCCCTGGGGGTGGGCTCGCTAATAAAGCTCA AAGCGCTATCTGCTCAAAGCGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGGGGGAGCATTTCTGCTGGCTCCAGAACTTTGGCCATCTATAAAGCTTAGCAGTGGA AATAAGGAAATTCTCAAGGAAGAGGAGCCATTGACCAGCACCAGAGAAAGGACAGCTCAT GACCAAACCATGTTGCCTAAAGTGGAGACCTTTGAAATTAATGAGTCAAAGCCCAAGAAA AGAAATGGGATGAACTGGTTCATGTTCCTGGTGGTCATCTACCTGATTCTGCTCACCGTG GGCACCGGGATGCTGGTGATGACAGTTCTGAAATTGCAGGAGCAGCTCCGGGCCCTGGTG ATCTACCCTCACAATGAAACGCTGGCCACGGAGGGGAGCTGGTCCTCTTTCCTCCAGAGC ATCCCTCCCCCAGCTGGGGATGCACCGAGACTGCAAATCCTGCAAACTCAGCTCACCCAG ATCTGCGCCAGGCAGGAGCAGTTACTGAGACGGGTGGACAACTGTACTCAGATCCCAGGC CCCCCAGGTCCCCAAGGCCCACCAGGAATCAAGGGAGAGACAGGAAGAAAAGGAGACATG GGCATGAAAGGGGACATGGGGCTCATGGGACCCCCCGGAGCCCGGGGGCATAAAGGTGAC TTGGGGATGCCCGGGTCCCCAGGTGTGGCTGGAGTTCCTGGACTCAAAGGAGATCAAGGA CAGCCTGGAACCAGGGGTCTTCCAGGCCTTCCAGGAGCTGCGGGATCCCCTGGTGCCAAG GGTGAGCCTGGCAGCCCTGGCCTCACTGGGCCAACAGGACCAGCAGGGAGTCCCGGGAGT CCAGGAGCCGAAGGCTTGAAAGGAAGCAAGGGGGACACAGGACTTCAAGGACAGAAAGGA ACAAAAGGAGAATCAGGATTTCCAGGCCCTGCAGGTCTGAAGGGAGAGAAGGGAAGCCGA GGCCTGGAAGGCTCCAGGGGTGCCCCTGGACTAGGTGGCCAAAAGGGAGAGCCCGGAGCC AAAGGATCTTCTGGGCTACAGGGAGCAAAGGGAGCAAAGGGTGAAAAAGGTGAATCCATG CTGTCTGTCAGGATTATCGGCTCCAGGAACCGAGGCCGAGCTGAAATTTTCTATAGCGGT GTCTGGGGGACAATTTGTGATGATGACTGGGACAATTCGGATGCCACTGTCTTCTGCCGC ATGCTGGGTTACTCCTCAGGAAGTGCCGTTTACAATGTGGGAGGAGGCACTGGGACCATC TGGCTGGACAATGTGGCATGTAAAGGGAGCGAATTTACCCTGTGGGACTGCGGCAAGAAT GCCTGGGGATCTCACAATTGCAACCACAATGAGGACGCAGGCGTGAACTGCAGCTGACCC CACAGCCCGACACCACTCTGTCCCTTGGGTGTCTGCAGCCCAGACTCAGCCCTGTGCTCT CTTGGATCTCCCTGGGGGTGGCTGAGCAGCCCCTGGGGGTGGGCTCGCTAATAAAGCTCA AAGCGCTATCTGCTCAAAGCGCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 657-758, + strand, RNAz p=0.992891 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 657-758, + strand, RNAz p=0.992891 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr2 (44975368-44975204) | |
| 1-163, gnl|canFam2|chr19 (34059767-34059215) | |
| 1-163, gnl|dasNov1|scaffold_27433 (12817-12261) | |
| 1-163, gnl|echTel1|scaffold_284969 (46631-47184) | |
| 1-163, gnl|hg17|chr2 (119415846-119416401) | |
| 1-163, gnl|Hg17|chr2 (119416051-119416203) | |
| 1-163, gnl|mm7|chr1 (120372542-120371978) | |
| 1-163, gnl|Mm7|chr1 (120372326-120372163) | |
| 1-163, gnl|monDom2|scaffold_2 (10986576-10985988) | |
| 1-163, gnl|oryCun1|scaffold_171324 (4299-3728) | |
| 1-163, gnl|panTro1|chr13 (5447471-5448026) | |
| 1-163, gnl|rheMac2|chr13 (125106324-125106880) | |
| 1-163, gnl|rn3|chrUn (9429514-9430095) | |
| 657-758, gnl|bosTau2|chr2 (44951757-44951656) | |
| 657-758, gnl|canFam2|chr19 (34034279-34034153) | |
| 657-758, gnl|dasNov1|scaffold_33206 (2865-2989) | |
| 657-758, gnl|echTel1|scaffold_318712 (90931-91046) | |
| 657-758, gnl|hg17|chr2 (119455961-119456087) | |
| 657-758, gnl|Hg17|chr2 (119455960-119456061) | |
| 657-758, gnl|loxAfr1|scaffold_21095 (26623-26753) | |
| 657-758, gnl|mm7|chr1 (120352369-120352249) | |
| 657-758, gnl|Mm7|chr1 (120352368-120352267) | |
| 657-758, gnl|monDom2|scaffold_2 (10947296-10947174) | |
| 657-758, gnl|oryCun1|scaffold_195638 (19743-19862) | |
| 657-758, gnl|panTro1|chr13 (5479337-5479463) | |
| 657-758, gnl|rheMac2|chr13 (125153070-125153196) | |
| 657-758, gnl|rn3|chrUn (9450772-9450892) | |
| 657-758, gnl|tetNig1|chr10 (8189504-8189661) | |
| 862-977, gnl|bosTau2|chr2 (44944891-44944775) | |
| 862-977, gnl|Hg17|chr2 (119465580-119465695) | |
| 862-977, gnl|Mm7|chr1 (120345449-120345334) | |
| 1008-1183, gnl|bosTau2|chr2 (44943632-44943457) | |
| 1008-1183, gnl|Hg17|chr2 (119466928-119467103) | |
| 1008-1183, gnl|Mm7|chr1 (120344226-120344051) | |
| 1185-1448, gnl|bosTau2|chr2 (44942050-44941766) | |
| 1185-1448, gnl|Hg17|chr2 (119468191-119468458) | |
| 1185-1448, gnl|Mm7|chr1 (120342285-120342044) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr2 (44975368-44975204) | |
| 1-163, gnl|canFam2|chr19 (34059767-34059215) | |
| 1-163, gnl|dasNov1|scaffold_27433 (12817-12261) | |
| 1-163, gnl|echTel1|scaffold_284969 (46631-47184) | |
| 1-163, gnl|hg17|chr2 (119415846-119416401) | |
| 1-163, gnl|Hg17|chr2 (119416051-119416203) | |
| 1-163, gnl|mm7|chr1 (120372542-120371978) | |
| 1-163, gnl|Mm7|chr1 (120372326-120372163) | |
| 1-163, gnl|monDom2|scaffold_2 (10986576-10985988) | |
| 1-163, gnl|oryCun1|scaffold_171324 (4299-3728) | |
| 1-163, gnl|panTro1|chr13 (5447471-5448026) | |
| 1-163, gnl|rheMac2|chr13 (125106324-125106880) | |
| 1-163, gnl|rn3|chrUn (9429514-9430095) | |
| 657-758, gnl|bosTau2|chr2 (44951757-44951656) | |
| 657-758, gnl|canFam2|chr19 (34034279-34034153) | |
| 657-758, gnl|dasNov1|scaffold_33206 (2865-2989) | |
| 657-758, gnl|echTel1|scaffold_318712 (90931-91046) | |
| 657-758, gnl|hg17|chr2 (119455961-119456087) | |
| 657-758, gnl|Hg17|chr2 (119455960-119456061) | |
| 657-758, gnl|loxAfr1|scaffold_21095 (26623-26753) | |
| 657-758, gnl|mm7|chr1 (120352369-120352249) | |
| 657-758, gnl|Mm7|chr1 (120352368-120352267) | |
| 657-758, gnl|monDom2|scaffold_2 (10947296-10947174) | |
| 657-758, gnl|oryCun1|scaffold_195638 (19743-19862) | |
| 657-758, gnl|panTro1|chr13 (5479337-5479463) | |
| 657-758, gnl|rheMac2|chr13 (125153070-125153196) | |
| 657-758, gnl|rn3|chrUn (9450772-9450892) | |
| 657-758, gnl|tetNig1|chr10 (8189504-8189661) | |
| 862-977, gnl|bosTau2|chr2 (44944891-44944775) | |
| 862-977, gnl|Hg17|chr2 (119465580-119465695) | |
| 862-977, gnl|Mm7|chr1 (120345449-120345334) | |
| 1008-1183, gnl|bosTau2|chr2 (44943632-44943457) | |
| 1008-1183, gnl|Hg17|chr2 (119466928-119467103) | |
| 1008-1183, gnl|Mm7|chr1 (120344226-120344051) | |
| 1185-1448, gnl|bosTau2|chr2 (44942050-44941766) | |
| 1185-1448, gnl|Hg17|chr2 (119468191-119468458) | |
| 1185-1448, gnl|Mm7|chr1 (120342285-120342044) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| clu (1.3161) | |
| csp (0.644745) | |
| nco (0.485201) | |
| cly (0.482567) | |
| cty (0.41632) | |
| nlu (0.383362) | |
| fce (0.271592) | |
| nbm (0.198649) | |
| cag (0.151194) | |
| liv (0.146284) | |
| pty (0.142714) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.3161) | |
| csp (0.644745) | |
| nco (0.485201) | |
| cly (0.482567) | |
| cty (0.41632) | |
| nlu (0.383362) | |
| fce (0.271592) | |
| nbm (0.198649) | |
| cag (0.151194) | |
| liv (0.146284) | |
| pty (0.142714) |