Non-Coding RNA Search

Ss1.1-Lng1-LNG010109G02.5.5

Sequence:


               
               CCTGCATCGCCTGAGACGCCCGCTCCAGAGAAGCAGCCTAAGGCTGGGGACAAAGGGAAC
AACCACAGAGCGGCCAAGAACTGCAGTCCCGCCAGCCTTCTCCAACCTCGGGACAGAAGA
ACCGCGACCGCAACCGCGGCTGCGGGGAGGGAAGGTCTTCCTGTGATGCTCTGTACAGCT
TCCCTGGAAGGCTCAGGACCAGGCCTGCATCCCGTGACCTCCCCGCTGGCTCTGCTGACT
TGCTGGGTTCATCCCACCTTCTGGGACCGGTTAACTGACGTCTTTTCTTCCTCCGTAGTC
ACTGTAGGGGCTGACCCGAGTCTGGGCCCGAGGAATGGAGAAGTCCTTGGGGGAGTTCCG
ATTCTGCAGCTGGAAGTGGGTGGTGTACGGCGCATAGACCGTATCGCCTGTCTCCTCGGT
ACCTTGAGTGATTCCCTCTTGAGTGTAAGCTCGGTTCTCCACACCATAGCTCTGCTTCAT
GAGTTGAGGTTTACAGAAAGCATCTTCCAGAGGGTAATCCATGGTGTTCCGTTGCTTGGT
GAGCAATTGAAACTCGGGTACCACGTAAGCCAACAGGAAAACCCAGCCATTGGCCACCAA
GGCTGCGCTGAGGATGGTGTCATCCCACTGGGGCCCAGGGGTAGGAACAAAGAGCAGGGC
GATCCACACCACCCAGACGGCGAGGGAGAGGAGCGTGGTGAAGTAGATGTGGGCCCCGTG
TCTCTTCCAGCCAGTGAAGGGTCCGCGGAAAACGAAAGAGGCCGTAAGGAAGGTCAGCAC
CATCAGGAAGAGGACATAGATGAGCAGCATGACAAAGTCCTCGTTGCGCCGAGGCGGAGG
CAGCTCAGAGAAGATGTTGACGTTGGTCCTGTTCATGGTGAGGACGATGTACTCGATGGC
GATGACATCCTGCACCAGGCTGAAGGCCACGGCCAGGCCCAGCATCACCAGCAAGGAAAG
CCCCCGCCTCCCATGGACCAGCCTGGTCAGGTTGAAGGCGTGAACCAGGAGGCAGGAGAA
GCAGAGGGCGAAGAGGATGCCGAAGAGGAAGAAGCGTGTGGGCCCCGTGCTGCCGTCAAG
TTGGATGATGAAGGCGAAGGTGAGGCCGAAGACCCCCAGCACGCCCAGGAGGAAGAGGAA
CTGGATGGGGAGCACTTTGCGCCTGTTGGAGTCCTGCACCTTGCAGATGAGGACCAGGAG
GGCGACCATGAAGGTCACCGAGCTCACAGCCCCCAAGGCGGCCAATGCTTCTAAGATGAT
GCCCCAAACTGCTTTCTGATCACATAGTCTGTAGTACCGGGGGTCCAGGTTCGAGCGGCA
ACCGCTGGGAGCTGCCGTGGCCATTCTGGTCCCGGGCGCCTGGGCTACGGAGGGTGAACT
TGGCGCTGCTGCTTCCCGCGCGTAGAGGCAGCACCGGAGCCCCTAGCTGCTGGGGAGTCC
GCGGGCGGCGATTACGCCCTCCCGGCGCCCAGCAGTTATAAAGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCATCGCCTGAGACGCCCGCTCCAGAGAAGCAGCCTAAGGCTGGGGACAAAGGGAAC
AACCACAGAGCGGCCAAGAACTGCAGTCCCGCCAGCCTTCTCCAACCTCGGGACAGAAGA
ACCGCGACCGCAACCGCGGCTGCGGGGAGGGAAGGTCTTCCTGTGATGCTCTGTACAGCT
TCCCTGGAAGGCTCAGGACCAGGCCTGCATCCCGTGACCTCCCCGCTGGCTCTGCTGACT
TGCTGGGTTCATCCCACCTTCTGGGACCGGTTAACTGACGTCTTTTCTTCCTCCGTAGTC
ACTGTAGGGGCTGACCCGAGTCTGGGCCCGAGGAATGGAGAAGTCCTTGGGGGAGTTCCG
ATTCTGCAGCTGGAAGTGGGTGGTGTACGGCGCATAGACCGTATCGCCTGTCTCCTCGGT
ACCTTGAGTGATTCCCTCTTGAGTGTAAGCTCGGTTCTCCACACCATAGCTCTGCTTCAT
GAGTTGAGGTTTACAGAAAGCATCTTCCAGAGGGTAATCCATGGTGTTCCGTTGCTTGGT
GAGCAATTGAAACTCGGGTACCACGTAAGCCAACAGGAAAACCCAGCCATTGGCCACCAA
GGCTGCGCTGAGGATGGTGTCATCCCACTGGGGCCCAGGGGTAGGAACAAAGAGCAGGGC
GATCCACACCACCCAGACGGCGAGGGAGAGGAGCGTGGTGAAGTAGATGTGGGCCCCGTG
TCTCTTCCAGCCAGTGAAGGGTCCGCGGAAAACGAAAGAGGCCGTAAGGAAGGTCAGCAC
CATCAGGAAGAGGACATAGATGAGCAGCATGACAAAGTCCTCGTTGCGCCGAGGCGGAGG
CAGCTCAGAGAAGATGTTGACGTTGGTCCTGTTCATGGTGAGGACGATGTACTCGATGGC
GATGACATCCTGCACCAGGCTGAAGGCCACGGCCAGGCCCAGCATCACCAGCAAGGAAAG
CCCCCGCCTCCCATGGACCAGCCTGGTCAGGTTGAAGGCGTGAACCAGGAGGCAGGAGAA
GCAGAGGGCGAAGAGGATGCCGAAGAGGAAGAAGCGTGTGGGCCCCGTGCTGCCGTCAAG
TTGGATGATGAAGGCGAAGGTGAGGCCGAAGACCCCCAGCACGCCCAGGAGGAAGAGGAA
CTGGATGGGGAGCACTTTGCGCCTGTTGGAGTCCTGCACCTTGCAGATGAGGACCAGGAG
GGCGACCATGAAGGTCACCGAGCTCACAGCCCCCAAGGCGGCCAATGCTTCTAAGATGAT
GCCCCAAACTGCTTTCTGATCACATAGTCTGTAGTACCGGGGGTCCAGGTTCGAGCGGCA
ACCGCTGGGAGCTGCCGTGGCCATTCTGGTCCCGGGCGCCTGGGCTACGGAGGGTGAACT
TGGCGCTGCTGCTTCCCGCGCGTAGAGGCAGCACCGGAGCCCCTAGCTGCTGGGGAGTCC
GCGGGCGGCGATTACGCCCTCCCGGCGCCCAGCAGTTATAAAGGCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873548|ref|XP_594155.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873548|ref|XP_594155.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               772-891, + strand, RNAz p=0.869508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               772-891, + strand, RNAz p=0.869508

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               181-366, gnl|bosTau2|chr5 (57673538-57673723)
               

               
               181-366, gnl|Hg17|chr12 (12956831-12956645)
               

               
               181-366, gnl|Mm7|chr6 (135098248-135098066)
               


               
               416-1352, gnl|bosTau2|chr5 (57677910-57678846)
               

               
               416-1352, gnl|Hg17|chr12 (12953383-12952443)
               

               
               416-1352, gnl|Mm7|chr6 (135093809-135092867)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-366, gnl|bosTau2|chr5 (57673538-57673723)
               

               
               181-366, gnl|Hg17|chr12 (12956831-12956645)
               

               
               181-366, gnl|Mm7|chr6 (135098248-135098066)
               


               
               416-1352, gnl|bosTau2|chr5 (57677910-57678846)
               

               
               416-1352, gnl|Hg17|chr12 (12953383-12952443)
               

               
               416-1352, gnl|Mm7|chr6 (135093809-135092867)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.478583)
               

               
               nlu (0.383362)
               

               
               pla (0.267344)
               

               
               ute (0.132784)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               nlu (0.383362)
               

               
               pla (0.267344)
               

               
               ute (0.132784)

	181-366, gnl\|bosTau2\|chr5 (57673538-57673723)
	181-366, gnl\|Hg17\|chr12 (12956831-12956645)
	181-366, gnl\|Mm7\|chr6 (135098248-135098066)

	416-1352, gnl\|bosTau2\|chr5 (57677910-57678846)
	416-1352, gnl\|Hg17\|chr12 (12953383-12952443)
	416-1352, gnl\|Mm7\|chr6 (135093809-135092867)