Ss1.1-Lng1-LNG010109G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGCTGGTCTTGCTGGGGCCCAGTACCAGGAGGCTGCCCTGTGGGCACTCCCTTCCTTC TCCAAGACCCAGACACCCAGCCGGACCAACAGTTGGCAGGACATGACCATGGCCTGGCTC CCGGGGTCCTTCCTCTGCGGAGCCCTGCTGGGCTGGGTCTGCTTAAGTGTCCCCGGGCTG GCGGTGGAGGTGAAGGTGCCCGCCGAGCCCCTGAGCGCGCCCGTGGGCAAGACGGCAGAG CTGATCTGCAGCTACAGCACGTCCGTGGGGGACAACTTCGCCCTGGAGTGGAGCTTCGTG CAGCCCGGGAGGCCCATCTCAGCGTCCCAACCCATCCTGTACTTCACCAATGGCCAGCTG TATCCAACTGGTTCTAAGTCAGAGAGGGCCAGCCTTCTTCAGAACCCCCCCACAGGAGGA GTGGCCACCCTGAAACTGACTGATGTCCGCCCCTCAGACACTGGAACCTACCTCTGTCAT GTTAACAACCCTCCAGATTTCTACACCAATGGGTTGGGGCTAATCAACCTTACTGTGCTG GTGCCCCCCAGTAGTCCCTTGTGCAGTCAGAGTGGTCAAACCTTCGTGGGGGGCTCTGCT GCATTGAGATGCAGCTCTTCCGAGGGAGCCCCCAGGCCAGTGTACAACTGGGTCCGCCTT GGATCTTCTCCAACACCTTCTCCTGGCAGCATGGTGCAAGATGAGGTGTCTGGCCAGCTC ATTCTCACCAATCTTTCCCTGGCCTCCTCGGGCACTTACCGCTGTGTGGCCACCAACCAG ATGGGCAGTGCGTCCTGTGAGCTGACCCTCTCAGTGACTGACTCTTCCAAAGGCCGAGTG GCCGGGGCTGTGATCGGAGTGCTCCTGGGTATGCTGTTCCTGTCGGTTGCTGTGTTCTGC CTGATAAGGTTCCAGAAAGAGAGAAGGAAGAAGCCCAAGGAGATATATGGGGGCAGTGAC CTACGGGAGGATGCCATCGCACCTGGGATTTTGGAGCAAACTTCTGTGAGGGGGGATTCT AACAATGGACTCCTGGAGAGGGCCCCCTCTGCCAGCACGGTGACGACCACCAAGTCCAAG ATCCCTATGGTTGTGTGATTTCTCTCCCAATCCCCGAGGATGATTATCAATAATTAAAGA CTTTGGGTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGCTGGTCTTGCTGGGGCCCAGTACCAGGAGGCTGCCCTGTGGGCACTCCCTTCCTTC TCCAAGACCCAGACACCCAGCCGGACCAACAGTTGGCAGGACATGACCATGGCCTGGCTC CCGGGGTCCTTCCTCTGCGGAGCCCTGCTGGGCTGGGTCTGCTTAAGTGTCCCCGGGCTG GCGGTGGAGGTGAAGGTGCCCGCCGAGCCCCTGAGCGCGCCCGTGGGCAAGACGGCAGAG CTGATCTGCAGCTACAGCACGTCCGTGGGGGACAACTTCGCCCTGGAGTGGAGCTTCGTG CAGCCCGGGAGGCCCATCTCAGCGTCCCAACCCATCCTGTACTTCACCAATGGCCAGCTG TATCCAACTGGTTCTAAGTCAGAGAGGGCCAGCCTTCTTCAGAACCCCCCCACAGGAGGA GTGGCCACCCTGAAACTGACTGATGTCCGCCCCTCAGACACTGGAACCTACCTCTGTCAT GTTAACAACCCTCCAGATTTCTACACCAATGGGTTGGGGCTAATCAACCTTACTGTGCTG GTGCCCCCCAGTAGTCCCTTGTGCAGTCAGAGTGGTCAAACCTTCGTGGGGGGCTCTGCT GCATTGAGATGCAGCTCTTCCGAGGGAGCCCCCAGGCCAGTGTACAACTGGGTCCGCCTT GGATCTTCTCCAACACCTTCTCCTGGCAGCATGGTGCAAGATGAGGTGTCTGGCCAGCTC ATTCTCACCAATCTTTCCCTGGCCTCCTCGGGCACTTACCGCTGTGTGGCCACCAACCAG ATGGGCAGTGCGTCCTGTGAGCTGACCCTCTCAGTGACTGACTCTTCCAAAGGCCGAGTG GCCGGGGCTGTGATCGGAGTGCTCCTGGGTATGCTGTTCCTGTCGGTTGCTGTGTTCTGC CTGATAAGGTTCCAGAAAGAGAGAAGGAAGAAGCCCAAGGAGATATATGGGGGCAGTGAC CTACGGGAGGATGCCATCGCACCTGGGATTTTGGAGCAAACTTCTGTGAGGGGGGATTCT AACAATGGACTCCTGGAGAGGGCCCCCTCTGCCAGCACGGTGACGACCACCAAGTCCAAG ATCCCTATGGTTGTGTGATTTCTCTCCCAATCCCCGAGGATGATTATCAATAATTAAAGA CTTTGGGTACAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-169, gnl|bosTau2|chr29 (20877491-20877653) | |
| 1-169, gnl|canFam2|chr5 (12669985-12669732) | |
| 1-169, gnl|dasNov1|scaffold_79519 (6031-5779) | |
| 1-169, gnl|echTel1|scaffold_323798 (4722-5023) | |
| 1-169, gnl|hg17|chr11 (124127098-124127397) | |
| 1-169, gnl|Hg17|chr11 (124127366-124127183) | |
| 1-169, gnl|loxAfr1|scaffold_5347 (53824-53514) | |
| 1-169, gnl|mm7|chr9 (37468135-37467855) | |
| 1-169, gnl|Mm7|chr9 (37467885-37468056) | |
| 1-169, gnl|monDom2|scaffold_15 (10493468-10493783) | |
| 1-169, gnl|oryCun1|scaffold_214644 (110797-110521) | |
| 1-169, gnl|panTro1|chr9 (126208869-126209168) | |
| 1-169, gnl|rheMac2|chr14 (122903643-122903943) | |
| 1-169, gnl|rn3|chr8 (38794273-38793994) | |
| 171-332, gnl|bosTau2|chr29 (20877999-20878160) | |
| 171-332, gnl|canFam2|chr5 (12670564-12670375) | |
| 171-332, gnl|dasNov1|scaffold_93286 (9225-9409) | |
| 171-332, gnl|echTel1|scaffold_323798 (4181-4385) | |
| 171-332, gnl|hg17|chr11 (124126531-124126715) | |
| 171-332, gnl|Hg17|chr11 (124126691-124126530) | |
| 171-332, gnl|loxAfr1|scaffold_5347 (54387-54167) | |
| 171-332, gnl|mm7|chr9 (37468644-37468476) | |
| 171-332, gnl|Mm7|chr9 (37468482-37468643) | |
| 171-332, gnl|monDom2|scaffold_15 (10492701-10492916) | |
| 171-332, gnl|oryCun1|scaffold_214644 (111300-111132) | |
| 171-332, gnl|panTro1|chr9 (126208302-126208486) | |
| 171-332, gnl|rheMac2|chr14 (122903075-122903259) | |
| 171-332, gnl|rn3|chr8 (38794788-38794620) | |
| 334-541, gnl|bosTau2|chr29 (20878949-20879156) | |
| 334-541, gnl|Hg17|chr11 (124126027-124125820) | |
| 334-541, gnl|Mm7|chr9 (37468912-37469119) | |
| 965-1150, gnl|bosTau2|chr29 (20883086-20883269) | |
| 965-1150, gnl|Hg17|chr11 (124122774-124122582) | |
| 965-1150, gnl|Mm7|chr9 (37472627-37472812) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-169, gnl|bosTau2|chr29 (20877491-20877653) | |
| 1-169, gnl|canFam2|chr5 (12669985-12669732) | |
| 1-169, gnl|dasNov1|scaffold_79519 (6031-5779) | |
| 1-169, gnl|echTel1|scaffold_323798 (4722-5023) | |
| 1-169, gnl|hg17|chr11 (124127098-124127397) | |
| 1-169, gnl|Hg17|chr11 (124127366-124127183) | |
| 1-169, gnl|loxAfr1|scaffold_5347 (53824-53514) | |
| 1-169, gnl|mm7|chr9 (37468135-37467855) | |
| 1-169, gnl|Mm7|chr9 (37467885-37468056) | |
| 1-169, gnl|monDom2|scaffold_15 (10493468-10493783) | |
| 1-169, gnl|oryCun1|scaffold_214644 (110797-110521) | |
| 1-169, gnl|panTro1|chr9 (126208869-126209168) | |
| 1-169, gnl|rheMac2|chr14 (122903643-122903943) | |
| 1-169, gnl|rn3|chr8 (38794273-38793994) | |
| 171-332, gnl|bosTau2|chr29 (20877999-20878160) | |
| 171-332, gnl|canFam2|chr5 (12670564-12670375) | |
| 171-332, gnl|dasNov1|scaffold_93286 (9225-9409) | |
| 171-332, gnl|echTel1|scaffold_323798 (4181-4385) | |
| 171-332, gnl|hg17|chr11 (124126531-124126715) | |
| 171-332, gnl|Hg17|chr11 (124126691-124126530) | |
| 171-332, gnl|loxAfr1|scaffold_5347 (54387-54167) | |
| 171-332, gnl|mm7|chr9 (37468644-37468476) | |
| 171-332, gnl|Mm7|chr9 (37468482-37468643) | |
| 171-332, gnl|monDom2|scaffold_15 (10492701-10492916) | |
| 171-332, gnl|oryCun1|scaffold_214644 (111300-111132) | |
| 171-332, gnl|panTro1|chr9 (126208302-126208486) | |
| 171-332, gnl|rheMac2|chr14 (122903075-122903259) | |
| 171-332, gnl|rn3|chr8 (38794788-38794620) | |
| 334-541, gnl|bosTau2|chr29 (20878949-20879156) | |
| 334-541, gnl|Hg17|chr11 (124126027-124125820) | |
| 334-541, gnl|Mm7|chr9 (37468912-37469119) | |
| 965-1150, gnl|bosTau2|chr29 (20883086-20883269) | |
| 965-1150, gnl|Hg17|chr11 (124122774-124122582) | |
| 965-1150, gnl|Mm7|chr9 (37472627-37472812) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.560146) | |
| sto (0.179824) |