Ss1.1-Lng1-LNG010109H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGAGAGAGGGCCTCATTCTTTCCCTCAGGAGAAAAAGAGTCGTGGTCCTGGCGATCAT AAAGGCGTCGAGAGAGAGGCCGACAGTCTGACAGCCTTCCGCAACCCGCGTGACTGTATT GGTAATGTCGGGGTGGGCGCATTTTTTGGAGCTAGAGGAAACCCTGCTCCCCCCACCCCT GCTCCTTGGTTCCTTCCACCCGGCAGTCTTTGGGGGACGTTGGGTGAGCCCATTTCTGGG GCGCGGGGGAGCGGCGCTTGGCCCCTTCGGCGATGGCTCAGGGAGAGAGGGCCTCATTCT TTCCCTCAGGAGAAAAAGAGTCGTGGTCCTGGCGATCATAAAGGCGTCGAGAGAGAGGCC GACAGTCTGACAGCCTTCCGCAACCCGCGTGACTGTATTGGTCTGTCTGCTACCCGCTAT GCCGCTGCCCGTTGCGTTGCAGACCCGCTTGGCCAAGAGAGGCATCCTCAAACATCTCGA GCCCGAACCAGAGGAAGAGATCATTGCCGAGGACTATGATGATGATCCAGTGGACTATGA GGCCACCCGGTTGGAGGGCCTGCCACCAAGCTGGTACAAGGTGTTTGACCCTTCCTGCGG GCTCCCTTACTACTGGAACGTGGACACAGACCTTGTGTCCTGGCTCTCCCCCCATGACCC CAACTCCGTCGTTACCAAATCTGCCAAGAAGCTCAGGAGCAATAACGCAGATGCTGAGGA GAAACTGGATCGGAGCCACGAGAAATCGGAAAGGGGCCATGAGAAATCAGAACGCAGCCA CGAGAAGTCAGAACGCGGCCACGAGAAGTCGGAGCGCGGCCACGAGAAGTCTGACAGGGA CCGGGAGCGTGGTTATGACAAAGTAGACAGAGAGAGAGAGCGGGACCGGGACCGGGACCG GGACCGAGGGTACGACAAGGCGGACCGAGAAGAGGGCAAAGAACGGCGCCACCATCGCCG GGAGGAGCTGGCTCCCTACCCCAAGAGCAAGAAGGCGGCAAGCCGGAAAGATGAAGAATT GGACCCCATGGACCCCAGCTCGTACTCAGACGCACCCCGGGGCACGTGGTCAACAGGACT CCCCAAGCGGAACGAGGCCAAGACGGGTGCTGACACCACAGCAGCGGGGCCCCTCTTCCA GCAGCGCCCCTACCCGTCACCCGGGGCCGTGCTCCGGGCCAATGCCGAGGCCTCCCGAAC CAAGCAGCAGGACTGAACCTTCCCTGCCCCTCCCTGCACCTGCCCCCCCCCCCAGAGGCG GAGTGTGGGGGGGTAATAAAAGCTTTTCAGTGGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGAGAGAGGGCCTCATTCTTTCCCTCAGGAGAAAAAGAGTCGTGGTCCTGGCGATCAT AAAGGCGTCGAGAGAGAGGCCGACAGTCTGACAGCCTTCCGCAACCCGCGTGACTGTATT GGTAATGTCGGGGTGGGCGCATTTTTTGGAGCTAGAGGAAACCCTGCTCCCCCCACCCCT GCTCCTTGGTTCCTTCCACCCGGCAGTCTTTGGGGGACGTTGGGTGAGCCCATTTCTGGG GCGCGGGGGAGCGGCGCTTGGCCCCTTCGGCGATGGCTCAGGGAGAGAGGGCCTCATTCT TTCCCTCAGGAGAAAAAGAGTCGTGGTCCTGGCGATCATAAAGGCGTCGAGAGAGAGGCC GACAGTCTGACAGCCTTCCGCAACCCGCGTGACTGTATTGGTCTGTCTGCTACCCGCTAT GCCGCTGCCCGTTGCGTTGCAGACCCGCTTGGCCAAGAGAGGCATCCTCAAACATCTCGA GCCCGAACCAGAGGAAGAGATCATTGCCGAGGACTATGATGATGATCCAGTGGACTATGA GGCCACCCGGTTGGAGGGCCTGCCACCAAGCTGGTACAAGGTGTTTGACCCTTCCTGCGG GCTCCCTTACTACTGGAACGTGGACACAGACCTTGTGTCCTGGCTCTCCCCCCATGACCC CAACTCCGTCGTTACCAAATCTGCCAAGAAGCTCAGGAGCAATAACGCAGATGCTGAGGA GAAACTGGATCGGAGCCACGAGAAATCGGAAAGGGGCCATGAGAAATCAGAACGCAGCCA CGAGAAGTCAGAACGCGGCCACGAGAAGTCGGAGCGCGGCCACGAGAAGTCTGACAGGGA CCGGGAGCGTGGTTATGACAAAGTAGACAGAGAGAGAGAGCGGGACCGGGACCGGGACCG GGACCGAGGGTACGACAAGGCGGACCGAGAAGAGGGCAAAGAACGGCGCCACCATCGCCG GGAGGAGCTGGCTCCCTACCCCAAGAGCAAGAAGGCGGCAAGCCGGAAAGATGAAGAATT GGACCCCATGGACCCCAGCTCGTACTCAGACGCACCCCGGGGCACGTGGTCAACAGGACT CCCCAAGCGGAACGAGGCCAAGACGGGTGCTGACACCACAGCAGCGGGGCCCCTCTTCCA GCAGCGCCCCTACCCGTCACCCGGGGCCGTGCTCCGGGCCAATGCCGAGGCCTCCCGAAC CAAGCAGCAGGACTGAACCTTCCCTGCCCCTCCCTGCACCTGCCCCCCCCCCCAGAGGCG GAGTGTGGGGGGGTAATAAAAGCTTTTCAGTGGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 102-252, - strand, RNAz p=0.941181 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 102-252, - strand, RNAz p=0.941181 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005834, - |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-276, gnl|bosTau2|chrX (26222214-26221934) | |
| 2-276, gnl|Hg17|chrX (48511479-48511768) | |
| 2-276, gnl|Mm7|chrX (6332369-6332086) | |
| 481-597, gnl|bosTau2|chrX (26219541-26219425) | |
| 481-597, gnl|Hg17|chrX (48514710-48514826) | |
| 481-597, gnl|Mm7|chrX (6329567-6329451) | |
| 708-995, gnl|bosTau2|chrX (26217905-26217624) | |
| 708-995, gnl|Hg17|chrX (48515755-48516042) | |
| 708-995, gnl|Mm7|chrX (6329037-6328754) | |
| 1055-1245, gnl|bosTau2|chrX (26217203-26217012) | |
| 1055-1245, gnl|canFam2|chrX (42010074-42010215) | |
| 1055-1245, gnl|danRer3|chr8 (33138252-33138384) | |
| 1055-1245, gnl|dasNov1|scaffold_56885 (3778-3919) | |
| 1055-1245, gnl|echTel1|scaffold_323080 (136259-136108) | |
| 1055-1245, gnl|fr1|chrUn (195497366-195497505) | |
| 1055-1245, gnl|hg17|chrX (48516442-48516583) | |
| 1055-1245, gnl|Hg17|chrX (48516448-48516630) | |
| 1055-1245, gnl|loxAfr1|scaffold_25999 (15909-15768) | |
| 1055-1245, gnl|mm7|chrX (6328030-6327889) | |
| 1055-1245, gnl|Mm7|chrX (6328022-6327731) | |
| 1055-1245, gnl|monDom2|scaffold_134 (207642-207501) | |
| 1055-1245, gnl|oryCun1|scaffold_160719 (4653-4512) | |
| 1055-1245, gnl|panTro1|chrX (49851619-49851760) | |
| 1055-1245, gnl|rheMac2|chrX (46757421-46757562) | |
| 1055-1245, gnl|rn3|chrX (26695749-26695890) | |
| 1055-1245, gnl|tetNig1|chr9 (9057909-9057778) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-276, gnl|bosTau2|chrX (26222214-26221934) | |
| 2-276, gnl|Hg17|chrX (48511479-48511768) | |
| 2-276, gnl|Mm7|chrX (6332369-6332086) | |
| 481-597, gnl|bosTau2|chrX (26219541-26219425) | |
| 481-597, gnl|Hg17|chrX (48514710-48514826) | |
| 481-597, gnl|Mm7|chrX (6329567-6329451) | |
| 708-995, gnl|bosTau2|chrX (26217905-26217624) | |
| 708-995, gnl|Hg17|chrX (48515755-48516042) | |
| 708-995, gnl|Mm7|chrX (6329037-6328754) | |
| 1055-1245, gnl|bosTau2|chrX (26217203-26217012) | |
| 1055-1245, gnl|canFam2|chrX (42010074-42010215) | |
| 1055-1245, gnl|danRer3|chr8 (33138252-33138384) | |
| 1055-1245, gnl|dasNov1|scaffold_56885 (3778-3919) | |
| 1055-1245, gnl|echTel1|scaffold_323080 (136259-136108) | |
| 1055-1245, gnl|fr1|chrUn (195497366-195497505) | |
| 1055-1245, gnl|hg17|chrX (48516442-48516583) | |
| 1055-1245, gnl|Hg17|chrX (48516448-48516630) | |
| 1055-1245, gnl|loxAfr1|scaffold_25999 (15909-15768) | |
| 1055-1245, gnl|mm7|chrX (6328030-6327889) | |
| 1055-1245, gnl|Mm7|chrX (6328022-6327731) | |
| 1055-1245, gnl|monDom2|scaffold_134 (207642-207501) | |
| 1055-1245, gnl|oryCun1|scaffold_160719 (4653-4512) | |
| 1055-1245, gnl|panTro1|chrX (49851619-49851760) | |
| 1055-1245, gnl|rheMac2|chrX (46757421-46757562) | |
| 1055-1245, gnl|rn3|chrX (26695749-26695890) | |
| 1055-1245, gnl|tetNig1|chr9 (9057909-9057778) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| csp (0.322373) | |
| cag (0.302389) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| pgl (0.118483) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| cag (0.302389) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| pgl (0.118483) |