Non-Coding RNA Search

Ss1.1-Lng1-LNG010110B02.5

Sequence:


               
               AGCTTTTGGGGGTCTTGTTAGCTGCCGGGGTTGGTCGCTGGACTACCGATTGTGGGGTAA
AGTTTTCAAACAGTGGTCCGATGCTTTGCCACCGGCAGTGGAGACGGAGATCGTCCATCA
GCAATGCCAGATCCTTAACCCACTGAGCGAGGCCAGAGATCAAACCCGCAATCTCATGGT
CGCTGGACTACCGATTGTGGGGTAAAGTTTTCAAACAGTGGTCCGATGCTTTGCCACCGG
CAGTGGAGACGGAGATCGTCCATCAGAGACCTTTGTCCTTCGAGGACGTGGCTGTGGGTT
TCACCCTGGAGGAGTGGCGGCTACTGGATCCATTTCAGAAGGACCTGTATAGGGAGGTCA
CGTTGGAGATCTGCCACAGCCTAGTGTCAGTAGGTTACGAAGCTCCCAAACCAGATGCAC
TCTTCCGGTTGGAGCAAGGAGAACCCCCTTGGAGAAGGGAGGGAGCAGCCCAGAGTCCCA
CCTGCCCAGACGAAATATGGGAGCTTGACCCTATGCAATGGCACTCAGAAAAGCAAAACA
GGATTAAAACTTTGGAAAGCTGTCAGCAAAGCTATGCACTTGGAAATAATTTCGATTTAT
GCAAAAGCCTTGTTCCTTTAACACAAAGACCCAGTAAGTTTGGCTCACATTATAAAAGTT
TGAAATCACCTTTAGGTTTTGTTATTGAGAATAGAAGACATACAGTAAAGGATTCTGATG
AGTTTGGTAGATGTGGGAAATCATCTCTCTGTCTCCACCATGATAACACTCTTATGGGAA
TTAAATACCATGGTTGTGTTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTTGGGGGTCTTGTTAGCTGCCGGGGTTGGTCGCTGGACTACCGATTGTGGGGTAA
AGTTTTCAAACAGTGGTCCGATGCTTTGCCACCGGCAGTGGAGACGGAGATCGTCCATCA
GCAATGCCAGATCCTTAACCCACTGAGCGAGGCCAGAGATCAAACCCGCAATCTCATGGT
CGCTGGACTACCGATTGTGGGGTAAAGTTTTCAAACAGTGGTCCGATGCTTTGCCACCGG
CAGTGGAGACGGAGATCGTCCATCAGAGACCTTTGTCCTTCGAGGACGTGGCTGTGGGTT
TCACCCTGGAGGAGTGGCGGCTACTGGATCCATTTCAGAAGGACCTGTATAGGGAGGTCA
CGTTGGAGATCTGCCACAGCCTAGTGTCAGTAGGTTACGAAGCTCCCAAACCAGATGCAC
TCTTCCGGTTGGAGCAAGGAGAACCCCCTTGGAGAAGGGAGGGAGCAGCCCAGAGTCCCA
CCTGCCCAGACGAAATATGGGAGCTTGACCCTATGCAATGGCACTCAGAAAAGCAAAACA
GGATTAAAACTTTGGAAAGCTGTCAGCAAAGCTATGCACTTGGAAATAATTTCGATTTAT
GCAAAAGCCTTGTTCCTTTAACACAAAGACCCAGTAAGTTTGGCTCACATTATAAAAGTT
TGAAATCACCTTTAGGTTTTGTTATTGAGAATAGAAGACATACAGTAAAGGATTCTGATG
AGTTTGGTAGATGTGGGAAATCATCTCTCTGTCTCCACCATGATAACACTCTTATGGGAA
TTAAATACCATGGTTGTGTTAAAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               264-395, gnl|bosTau2|chr18 (50033976-50033845)
               

               
               264-395, gnl|Hg17|chr19 (57073583-57073452)
               

               
               264-395, gnl|Mm7|chrX (19214814-19214947)
               


               
               485-804, gnl|bosTau2|chr18 (50031427-50031114)
               

               
               485-804, gnl|Hg17|chr19 (57068962-57068643)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-395, gnl|bosTau2|chr18 (50033976-50033845)
               

               
               264-395, gnl|Hg17|chr19 (57073583-57073452)
               

               
               264-395, gnl|Mm7|chrX (19214814-19214947)
               


               
               485-804, gnl|bosTau2|chr18 (50031427-50031114)
               

               
               485-804, gnl|Hg17|chr19 (57068962-57068643)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               hlv (0.278513)
               

               
               hea (0.204499)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               hea (0.204499)
               

               
               nje (0.16592)

	264-395, gnl\|bosTau2\|chr18 (50033976-50033845)
	264-395, gnl\|Hg17\|chr19 (57073583-57073452)
	264-395, gnl\|Mm7\|chrX (19214814-19214947)

	485-804, gnl\|bosTau2\|chr18 (50031427-50031114)
	485-804, gnl\|Hg17\|chr19 (57068962-57068643)