Ss1.1-Lng1-LNG010110B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAACAGCTTGTTATTTGGTGGATTGTGGCAGTAAATCGGGCGAGTAGGGAACCGGGCGC AGGAACTGCCGCGGCGGCCGAGAGTGGTGCTGCCCGGACGGGGGCCCACGGGGGTCAGTG GGGCGGAGGACTCGGGAGCTGACAGCGCCCACTTCACCCTCAGTTGCGGTAGAGAAGATA GCTCGTTGAGCTGGAACCCCACAGATCACCAGTAAAAATGAAGGCGGCGGATGAGCCTGC CTACCTGACAGTGGGGACTGAGGTCAGTGCCAAGTACCGAGGTGCCTTCTGTGAGGCAAA GATTAAGACTGTGAAAAGGCTGGTAAAAGTTAAGGTACTCCTGAAACAAGATAATACTAC ACAGTTGGTGCAAGATGACCAAGTAAAGGGTCCTTTAAGAGTTGGAGCTATTGTTGAAAC AAGGACATCTGATGGATCCTTTCAGGAAGCTGTTATCAGCAAGTTGACAGATGCTAGTTG GTATACTGTGGTGTTTGATGATGGTGATGAGCGAACACTGAGACGCACCTCACTTTGCCT AAAAGGAGAGCGGCATTTTGCCGAGAGCGAGACACTTGACCAGCTTCCATTAACAAATCC AGAGCATTTTGGAACTCCAGTAATTGCAAAGAAGACAAACAGAGGAAGGAGGTCCTCCTC GCTGCCTGTTAATGAAGATGAAAAAGAAGAAGAAAGTAGTGAAGAGGAAGATGAGGATAA GCGACGTCTCAACGATGAATTATTAGGAAAAGTTGTAAGTGTGGTATCTTCATCTGAGAA GACTGAATGGTATCCTGCTTTGGTAGTATCTCCCAGCTGTAATGATGATATCACAGTGAA AAAAGACCAGTGTTTAATTCGGTCATTTATTGATTCTAAATTTTATTCCATACCAAGAAA GGATATCAAGGAAGTAGATATTCTCAGTCTACCTGAATCTGAGCTCTCTGCTAAACCAGG GCTACAGAAAGCAAGCATCTTCTTAAAAACTAGAGTTGTTCCTGATAATTGGAAAATGGA TATAAGTGAAATCCTTGAGTCATCTAGTAGTGATGATGAAGATGGTCCAGCTGAAGAAAA TGAGGAAGAAAAGGAAAAGGAGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAACAGCTTGTTATTTGGTGGATTGTGGCAGTAAATCGGGCGAGTAGGGAACCGGGCGC AGGAACTGCCGCGGCGGCCGAGAGTGGTGCTGCCCGGACGGGGGCCCACGGGGGTCAGTG GGGCGGAGGACTCGGGAGCTGACAGCGCCCACTTCACCCTCAGTTGCGGTAGAGAAGATA GCTCGTTGAGCTGGAACCCCACAGATCACCAGTAAAAATGAAGGCGGCGGATGAGCCTGC CTACCTGACAGTGGGGACTGAGGTCAGTGCCAAGTACCGAGGTGCCTTCTGTGAGGCAAA GATTAAGACTGTGAAAAGGCTGGTAAAAGTTAAGGTACTCCTGAAACAAGATAATACTAC ACAGTTGGTGCAAGATGACCAAGTAAAGGGTCCTTTAAGAGTTGGAGCTATTGTTGAAAC AAGGACATCTGATGGATCCTTTCAGGAAGCTGTTATCAGCAAGTTGACAGATGCTAGTTG GTATACTGTGGTGTTTGATGATGGTGATGAGCGAACACTGAGACGCACCTCACTTTGCCT AAAAGGAGAGCGGCATTTTGCCGAGAGCGAGACACTTGACCAGCTTCCATTAACAAATCC AGAGCATTTTGGAACTCCAGTAATTGCAAAGAAGACAAACAGAGGAAGGAGGTCCTCCTC GCTGCCTGTTAATGAAGATGAAAAAGAAGAAGAAAGTAGTGAAGAGGAAGATGAGGATAA GCGACGTCTCAACGATGAATTATTAGGAAAAGTTGTAAGTGTGGTATCTTCATCTGAGAA GACTGAATGGTATCCTGCTTTGGTAGTATCTCCCAGCTGTAATGATGATATCACAGTGAA AAAAGACCAGTGTTTAATTCGGTCATTTATTGATTCTAAATTTTATTCCATACCAAGAAA GGATATCAAGGAAGTAGATATTCTCAGTCTACCTGAATCTGAGCTCTCTGCTAAACCAGG GCTACAGAAAGCAAGCATCTTCTTAAAAACTAGAGTTGTTCCTGATAATTGGAAAATGGA TATAAGTGAAATCCTTGAGTCATCTAGTAGTGATGATGAAGATGGTCCAGCTGAAGAAAA TGAGGAAGAAAAGGAAAAGGAGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 222-337, + strand, RNAz p=0.917893 | |
| 958-1104, + strand, RNAz p=0.945229 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 222-337, + strand, RNAz p=0.917893 | |
| 958-1104, + strand, RNAz p=0.945229 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-166, gnl|bosTau2|chr10 (48064234-48064068) | |
| 1-166, gnl|Hg17|chr14 (57835005-57835171) | |
| 1-166, gnl|Mm7|chr12 (68959835-68960000) | |
| 222-337, gnl|bosTau2|chr10 (48061135-48061020) | |
| 222-337, gnl|Hg17|chr14 (57838049-57838164) | |
| 222-337, gnl|Mm7|chr12 (68963211-68963326) | |
| 670-809, gnl|bosTau2|chr10 (48048178-48048038) | |
| 670-809, gnl|canFam2|chr8 (36708957-36709131) | |
| 670-809, gnl|danRer3|chr17 (8524666-8524819) | |
| 670-809, gnl|dasNov1|scaffold_21493 (11836-11662) | |
| 670-809, gnl|echTel1|scaffold_225510 (12204-12369) | |
| 670-809, gnl|galGal2|chr5 (51993731-51993591) | |
| 670-809, gnl|hg17|chr14 (57859955-57860129) | |
| 670-809, gnl|Hg17|chr14 (57859956-57860096) | |
| 670-809, gnl|loxAfr1|scaffold_147 (138094-137921) | |
| 670-809, gnl|mm7|chr12 (68983677-68983843) | |
| 670-809, gnl|Mm7|chr12 (68983678-68983813) | |
| 670-809, gnl|monDom2|scaffold_8 (70367219-70367393) | |
| 670-809, gnl|oryCun1|scaffold_213913 (1530-1704) | |
| 670-809, gnl|panTro1|chr15 (57418107-57418281) | |
| 670-809, gnl|rheMac2|chr7 (121340909-121341083) | |
| 670-809, gnl|rn3|chr6 (93158815-93158981) | |
| 670-809, gnl|xenTro1|scaffold_33 (1270871-1270725) | |
| 958-1104, gnl|bosTau2|chr10 (48043391-48043245) | |
| 958-1104, gnl|canFam2|chr8 (36715714-36715840) | |
| 958-1104, gnl|dasNov1|scaffold_21493 (7776-7635) | |
| 958-1104, gnl|echTel1|scaffold_293713 (77782-77924) | |
| 958-1104, gnl|fr1|chrUn (93222881-93222769) | |
| 958-1104, gnl|galGal2|chr5 (51988223-51988099) | |
| 958-1104, gnl|hg17|chr14 (57866446-57866587) | |
| 958-1104, gnl|Hg17|chr14 (57866472-57866618) | |
| 958-1104, gnl|mm7|chr12 (68991005-68991146) | |
| 958-1104, gnl|Mm7|chr12 (68991031-68991177) | |
| 958-1104, gnl|monDom2|scaffold_8 (70374985-70375104) | |
| 958-1104, gnl|oryCun1|scaffold_213913 (7079-7220) | |
| 958-1104, gnl|panTro1|chr15 (57424790-57424931) | |
| 958-1104, gnl|rheMac2|chr7 (121347228-121347369) | |
| 958-1104, gnl|rn3|chr6 (93165870-93166010) | |
| 958-1104, gnl|tetNig1|chrUn_random (83023547-83023749) | |
| 958-1104, gnl|xenTro1|scaffold_33 (1266762-1266624) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-166, gnl|bosTau2|chr10 (48064234-48064068) | |
| 1-166, gnl|Hg17|chr14 (57835005-57835171) | |
| 1-166, gnl|Mm7|chr12 (68959835-68960000) | |
| 222-337, gnl|bosTau2|chr10 (48061135-48061020) | |
| 222-337, gnl|Hg17|chr14 (57838049-57838164) | |
| 222-337, gnl|Mm7|chr12 (68963211-68963326) | |
| 670-809, gnl|bosTau2|chr10 (48048178-48048038) | |
| 670-809, gnl|canFam2|chr8 (36708957-36709131) | |
| 670-809, gnl|danRer3|chr17 (8524666-8524819) | |
| 670-809, gnl|dasNov1|scaffold_21493 (11836-11662) | |
| 670-809, gnl|echTel1|scaffold_225510 (12204-12369) | |
| 670-809, gnl|galGal2|chr5 (51993731-51993591) | |
| 670-809, gnl|hg17|chr14 (57859955-57860129) | |
| 670-809, gnl|Hg17|chr14 (57859956-57860096) | |
| 670-809, gnl|loxAfr1|scaffold_147 (138094-137921) | |
| 670-809, gnl|mm7|chr12 (68983677-68983843) | |
| 670-809, gnl|Mm7|chr12 (68983678-68983813) | |
| 670-809, gnl|monDom2|scaffold_8 (70367219-70367393) | |
| 670-809, gnl|oryCun1|scaffold_213913 (1530-1704) | |
| 670-809, gnl|panTro1|chr15 (57418107-57418281) | |
| 670-809, gnl|rheMac2|chr7 (121340909-121341083) | |
| 670-809, gnl|rn3|chr6 (93158815-93158981) | |
| 670-809, gnl|xenTro1|scaffold_33 (1270871-1270725) | |
| 958-1104, gnl|bosTau2|chr10 (48043391-48043245) | |
| 958-1104, gnl|canFam2|chr8 (36715714-36715840) | |
| 958-1104, gnl|dasNov1|scaffold_21493 (7776-7635) | |
| 958-1104, gnl|echTel1|scaffold_293713 (77782-77924) | |
| 958-1104, gnl|fr1|chrUn (93222881-93222769) | |
| 958-1104, gnl|galGal2|chr5 (51988223-51988099) | |
| 958-1104, gnl|hg17|chr14 (57866446-57866587) | |
| 958-1104, gnl|Hg17|chr14 (57866472-57866618) | |
| 958-1104, gnl|mm7|chr12 (68991005-68991146) | |
| 958-1104, gnl|Mm7|chr12 (68991031-68991177) | |
| 958-1104, gnl|monDom2|scaffold_8 (70374985-70375104) | |
| 958-1104, gnl|oryCun1|scaffold_213913 (7079-7220) | |
| 958-1104, gnl|panTro1|chr15 (57424790-57424931) | |
| 958-1104, gnl|rheMac2|chr7 (121347228-121347369) | |
| 958-1104, gnl|rn3|chr6 (93165870-93166010) | |
| 958-1104, gnl|tetNig1|chrUn_random (83023547-83023749) | |
| 958-1104, gnl|xenTro1|scaffold_33 (1266762-1266624) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cut (0.339847) | |
| ret (0.128733) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| ret (0.128733) | |
| eep (0.122564) | |
| jca (0.11396) |