Ss1.1-Lng1-LNG010110G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTCCCCCGCGGGGGCTCTGGGTCCGGCGGGACCATGTTCACCAGCACCGGCTCCAGTG GGCTCTACAAGGCACCTCTGTCCAAGAGCCTTTTACTGGTCCCCAGCGCCCTGTCCCTCT TGCTGGCCCTTCTCCTGCCACACTGTCAGAGGTTCTTTGTGTACGACCTCCAGGCAGTCA AGGACGAATTCCAGATTTGGAGATTGATATGTGGAAGAATAATTTGCCTCGATTTGAAAG ATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGAA GCAGGAAATTTGCATCCTTTTTGCTGGGCTCCTGGGTTCTGTCAGCCGTGGGTGACTTCA TTCTCGTGGAAGCTGTGCAGTATTCCTTTGGTATCACTGCAGCCAGAAATTTGCCTTCTG GATTCCTGGCACCTGTATTTGCTCTGTTTGTACCATTTTACTGCTCCATCCCGAGAGTCC AAGTGGCGCATATCCTGGGCCCGCTGTCCATCACAAACAAGACACTGATTTATATACTGG GACTACAGCTTTTCACCTCTGGTTCCTACATCTGGATTGTAGCCATAAGTGGACTTGTTT CTGGCATCTGCTACAACAGCCAAGTGTTGCAAATGCACGAGGTGCTCTGCGTTCCAAGCT GGATGGCAAAGTTCTGTTCTTGGGCCCTCGAGCCCATCTTCTCATCTTCGGAACCCACCA CCGAGGCCCGAATCGGCATGGGAGCCACGGTCGACATCCAGAGGCAGCAGAGGATGGAGC TGCTGGATCGGCAGCTGACGCTGGCGCAGTTTGCACACTCGAGGCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTCCCCCGCGGGGGCTCTGGGTCCGGCGGGACCATGTTCACCAGCACCGGCTCCAGTG GGCTCTACAAGGCACCTCTGTCCAAGAGCCTTTTACTGGTCCCCAGCGCCCTGTCCCTCT TGCTGGCCCTTCTCCTGCCACACTGTCAGAGGTTCTTTGTGTACGACCTCCAGGCAGTCA AGGACGAATTCCAGATTTGGAGATTGATATGTGGAAGAATAATTTGCCTCGATTTGAAAG ATACTTTCTGCAGTAGTCTGCTTATTTATAATTTTAGGATATTTGAAAGAAGATATGGAA GCAGGAAATTTGCATCCTTTTTGCTGGGCTCCTGGGTTCTGTCAGCCGTGGGTGACTTCA TTCTCGTGGAAGCTGTGCAGTATTCCTTTGGTATCACTGCAGCCAGAAATTTGCCTTCTG GATTCCTGGCACCTGTATTTGCTCTGTTTGTACCATTTTACTGCTCCATCCCGAGAGTCC AAGTGGCGCATATCCTGGGCCCGCTGTCCATCACAAACAAGACACTGATTTATATACTGG GACTACAGCTTTTCACCTCTGGTTCCTACATCTGGATTGTAGCCATAAGTGGACTTGTTT CTGGCATCTGCTACAACAGCCAAGTGTTGCAAATGCACGAGGTGCTCTGCGTTCCAAGCT GGATGGCAAAGTTCTGTTCTTGGGCCCTCGAGCCCATCTTCTCATCTTCGGAACCCACCA CCGAGGCCCGAATCGGCATGGGAGCCACGGTCGACATCCAGAGGCAGCAGAGGATGGAGC TGCTGGATCGGCAGCTGACGCTGGCGCAGTTTGCACACTCGAGGCGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 193-314, gnl|bosTau2|chr12 (39805608-39805729) | |
| 193-314, gnl|canFam2|chr22 (52228211-52228322) | |
| 193-314, gnl|danRer3|chr1 (32526687-32526794) | |
| 193-314, gnl|dasNov1|scaffold_12892 (5737-5855) | |
| 193-314, gnl|fr1|chrUn (135921084-135921176) | |
| 193-314, gnl|galGal2|chr1 (137283018-137282922) | |
| 193-314, gnl|hg17|chr13 (98694052-98694169) | |
| 193-314, gnl|Hg17|chr13 (98694086-98694206) | |
| 193-314, gnl|loxAfr1|scaffold_3254 (91017-90901) | |
| 193-314, gnl|mm7|chr14 (116311896-116312013) | |
| 193-314, gnl|Mm7|chr14 (116311929-116312050) | |
| 193-314, gnl|monDom2|scaffold_11 (53170444-53170335) | |
| 193-314, gnl|panTro1|chr14 (81991719-81991836) | |
| 193-314, gnl|rheMac2|chr17 (79615640-79615757) | |
| 193-314, gnl|rn3|chr15 (107024333-107024450) | |
| 193-314, gnl|tetNig1|chrUn_random (9983417-9983334) | |
| 315-424, gnl|bosTau2|chr12 (39806263-39806372) | |
| 315-424, gnl|canFam2|chr22 (52228883-52229038) | |
| 315-424, gnl|dasNov1|scaffold_12892 (6406-6563) | |
| 315-424, gnl|echTel1|scaffold_279511 (134273-134430) | |
| 315-424, gnl|galGal2|chr1 (137282421-137282241) | |
| 315-424, gnl|hg17|chr13 (98694750-98694907) | |
| 315-424, gnl|Hg17|chr13 (98694770-98694879) | |
| 315-424, gnl|loxAfr1|scaffold_3254 (90272-90115) | |
| 315-424, gnl|mm7|chr14 (116312831-116312991) | |
| 315-424, gnl|Mm7|chr14 (116312851-116312960) | |
| 315-424, gnl|monDom2|scaffold_11 (53168491-53168336) | |
| 315-424, gnl|oryCun1|scaffold_198737 (142186-142030) | |
| 315-424, gnl|panTro1|chr14 (81992415-81992572) | |
| 315-424, gnl|rheMac2|chr17 (79616329-79616486) | |
| 315-424, gnl|rn3|chr15 (107025226-107025387) | |
| 315-424, gnl|tetNig1|chrUn_random (9983102-9982951) | |
| 425-548, gnl|bosTau2|chr12 (39919005-39919128) | |
| 425-548, gnl|canFam2|chr22 (52303437-52303564) | |
| 425-548, gnl|danRer3|chr1 (32536515-32536642) | |
| 425-548, gnl|dasNov1|scaffold_90106 (192-313) | |
| 425-548, gnl|echTel1|scaffold_316073 (76126-76253) | |
| 425-548, gnl|galGal2|chr1 (137230509-137230384) | |
| 425-548, gnl|hg17|chr13 (98764349-98764476) | |
| 425-548, gnl|Hg17|chr13 (98764352-98764475) | |
| 425-548, gnl|loxAfr1|scaffold_3254 (19300-19173) | |
| 425-548, gnl|mm7|chr14 (116378246-116378373) | |
| 425-548, gnl|Mm7|chr14 (116378249-116378372) | |
| 425-548, gnl|monDom2|scaffold_11 (53065209-53065082) | |
| 425-548, gnl|oryCun1|scaffold_198737 (65803-65683) | |
| 425-548, gnl|panTro1|chr14 (82060949-82061076) | |
| 425-548, gnl|rheMac2|chr17 (79687324-79687451) | |
| 425-548, gnl|rn3|chr15 (107091766-107091893) | |
| 425-548, gnl|xenTro1|scaffold_128 (2089039-2089166) | |
| 599-828, gnl|bosTau2|chr12 (39943323-39943552) | |
| 599-828, gnl|Hg17|chr13 (98790577-98790806) | |
| 599-828, gnl|Mm7|chr14 (116398867-116399096) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 193-314, gnl|bosTau2|chr12 (39805608-39805729) | |
| 193-314, gnl|canFam2|chr22 (52228211-52228322) | |
| 193-314, gnl|danRer3|chr1 (32526687-32526794) | |
| 193-314, gnl|dasNov1|scaffold_12892 (5737-5855) | |
| 193-314, gnl|fr1|chrUn (135921084-135921176) | |
| 193-314, gnl|galGal2|chr1 (137283018-137282922) | |
| 193-314, gnl|hg17|chr13 (98694052-98694169) | |
| 193-314, gnl|Hg17|chr13 (98694086-98694206) | |
| 193-314, gnl|loxAfr1|scaffold_3254 (91017-90901) | |
| 193-314, gnl|mm7|chr14 (116311896-116312013) | |
| 193-314, gnl|Mm7|chr14 (116311929-116312050) | |
| 193-314, gnl|monDom2|scaffold_11 (53170444-53170335) | |
| 193-314, gnl|panTro1|chr14 (81991719-81991836) | |
| 193-314, gnl|rheMac2|chr17 (79615640-79615757) | |
| 193-314, gnl|rn3|chr15 (107024333-107024450) | |
| 193-314, gnl|tetNig1|chrUn_random (9983417-9983334) | |
| 315-424, gnl|bosTau2|chr12 (39806263-39806372) | |
| 315-424, gnl|canFam2|chr22 (52228883-52229038) | |
| 315-424, gnl|dasNov1|scaffold_12892 (6406-6563) | |
| 315-424, gnl|echTel1|scaffold_279511 (134273-134430) | |
| 315-424, gnl|galGal2|chr1 (137282421-137282241) | |
| 315-424, gnl|hg17|chr13 (98694750-98694907) | |
| 315-424, gnl|Hg17|chr13 (98694770-98694879) | |
| 315-424, gnl|loxAfr1|scaffold_3254 (90272-90115) | |
| 315-424, gnl|mm7|chr14 (116312831-116312991) | |
| 315-424, gnl|Mm7|chr14 (116312851-116312960) | |
| 315-424, gnl|monDom2|scaffold_11 (53168491-53168336) | |
| 315-424, gnl|oryCun1|scaffold_198737 (142186-142030) | |
| 315-424, gnl|panTro1|chr14 (81992415-81992572) | |
| 315-424, gnl|rheMac2|chr17 (79616329-79616486) | |
| 315-424, gnl|rn3|chr15 (107025226-107025387) | |
| 315-424, gnl|tetNig1|chrUn_random (9983102-9982951) | |
| 425-548, gnl|bosTau2|chr12 (39919005-39919128) | |
| 425-548, gnl|canFam2|chr22 (52303437-52303564) | |
| 425-548, gnl|danRer3|chr1 (32536515-32536642) | |
| 425-548, gnl|dasNov1|scaffold_90106 (192-313) | |
| 425-548, gnl|echTel1|scaffold_316073 (76126-76253) | |
| 425-548, gnl|galGal2|chr1 (137230509-137230384) | |
| 425-548, gnl|hg17|chr13 (98764349-98764476) | |
| 425-548, gnl|Hg17|chr13 (98764352-98764475) | |
| 425-548, gnl|loxAfr1|scaffold_3254 (19300-19173) | |
| 425-548, gnl|mm7|chr14 (116378246-116378373) | |
| 425-548, gnl|Mm7|chr14 (116378249-116378372) | |
| 425-548, gnl|monDom2|scaffold_11 (53065209-53065082) | |
| 425-548, gnl|oryCun1|scaffold_198737 (65803-65683) | |
| 425-548, gnl|panTro1|chr14 (82060949-82061076) | |
| 425-548, gnl|rheMac2|chr17 (79687324-79687451) | |
| 425-548, gnl|rn3|chr15 (107091766-107091893) | |
| 425-548, gnl|xenTro1|scaffold_128 (2089039-2089166) | |
| 599-828, gnl|bosTau2|chr12 (39943323-39943552) | |
| 599-828, gnl|Hg17|chr13 (98790577-98790806) | |
| 599-828, gnl|Mm7|chr14 (116398867-116399096) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| cmu (0.186393) | |
| cag (0.151194) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| cmu (0.186393) | |
| cag (0.151194) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) |