Non-Coding RNA Search

Ss1.1-Lng1-LNG010110G11.5

Sequence:


               
               ACCACTGCGCCAGGACGGGAACTCCCAGGGGTGCTTTTTTATCATTCATTCATTCAATAC
ATATTTATTAAGTGCCCTACCATATGCCAGGCATTGTTCTGTGCAGTGACAGTATAGCTA
TAAACAAAACAAAAATCCTAGCTCTCATACAGTTAGTGTTGTAGGGAGGAAAGGATAATA
AATAAGACAAAAAAAAGTAAATTGAATGATGTATTGGACAATGGTACGTTTGAGAAAAAA
ATGCAGGGAGCAGGATAGGGAATGTGGAGAGGAGGGAAGGCGAAGTTTTGCAGTTTTAAA
TGGCAAGTTTGGGTAACATTTGAATGAAATGAAGGAGGAGGGTATACAGATATCTGAGGG
GATAATATTCGAGGCAAAGTTAAAGGCCCTTGCAGGTGGTGATCCCTGGTATAAACAAGG
AAGAGAAAGAAGACCATTTGGCTGAATCAGTAGGGTGAATTGTAGGAAATGTAACTAGAC
AGGTAACAGATT------------------------------------------------
------------------------------------------------------------
------------------------------------------------GAACCAAGGTAG
AAACAGAGATCAAAATAGAGTTGATACTTACTTGGACCAGAAAAGTAGGACCCTGTGAGA
AGTGGTCAAATTCTAGACATATTCGGAAGGGATTTCTAGCTGATGATGAATTGAATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACTGCGCCAGGACGGGAACTCCCAGGGGTGCTTTTTTATCATTCATTCATTCAATAC
ATATTTATTAAGTGCCCTACCATATGCCAGGCATTGTTCTGTGCAGTGACAGTATAGCTA
TAAACAAAACAAAAATCCTAGCTCTCATACAGTTAGTGTTGTAGGGAGGAAAGGATAATA
AATAAGACAAAAAAAAGTAAATTGAATGATGTATTGGACAATGGTACGTTTGAGAAAAAA
ATGCAGGGAGCAGGATAGGGAATGTGGAGAGGAGGGAAGGCGAAGTTTTGCAGTTTTAAA
TGGCAAGTTTGGGTAACATTTGAATGAAATGAAGGAGGAGGGTATACAGATATCTGAGGG
GATAATATTCGAGGCAAAGTTAAAGGCCCTTGCAGGTGGTGATCCCTGGTATAAACAAGG
AAGAGAAAGAAGACCATTTGGCTGAATCAGTAGGGTGAATTGTAGGAAATGTAACTAGAC
AGGTAACAGATT------------------------------------------------
------------------------------------------------------------
------------------------------------------------GAACCAAGGTAG
AAACAGAGATCAAAATAGAGTTGATACTTACTTGGACCAGAAAAGTAGGACCCTGTGAGA
AGTGGTCAAATTCTAGACATATTCGGAAGGGATTTCTAGCTGATGATGAATTGAATGTGG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               26-494, gnl|bosTau2|chr1 (79021100-79021571)
               


               
               513-624, gnl|bosTau2|chr1 (79021767-79021877)
               

               
               513-624, gnl|canFam2|chr23 (41107522-41106937)
               

               
               513-624, gnl|hg17|chr3 (143551960-143552556)
               

               
               513-624, gnl|Hg17|chr3 (143552177-143552290)
               

               
               513-624, gnl|panTro1|chr2 (146126570-146127166)
               

               
               513-624, gnl|rheMac2|chr2 (145510513-145509914)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-494, gnl|bosTau2|chr1 (79021100-79021571)
               


               
               513-624, gnl|bosTau2|chr1 (79021767-79021877)
               

               
               513-624, gnl|canFam2|chr23 (41107522-41106937)
               

               
               513-624, gnl|hg17|chr3 (143551960-143552556)
               

               
               513-624, gnl|Hg17|chr3 (143552177-143552290)
               

               
               513-624, gnl|panTro1|chr2 (146126570-146127166)
               

               
               513-624, gnl|rheMac2|chr2 (145510513-145509914)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	26-494, gnl\|bosTau2\|chr1 (79021100-79021571)

	513-624, gnl\|bosTau2\|chr1 (79021767-79021877)
	513-624, gnl\|canFam2\|chr23 (41107522-41106937)
	513-624, gnl\|hg17\|chr3 (143551960-143552556)
	513-624, gnl\|Hg17\|chr3 (143552177-143552290)
	513-624, gnl\|panTro1\|chr2 (146126570-146127166)
	513-624, gnl\|rheMac2\|chr2 (145510513-145509914)