Ss1.1-Lng1-LNG010111D05.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCACCGCGGTTCCCGGTTCTAAACTCTCCATCCATTCGCCTCGACTCCGCTTCTCTC CAGACTCCGAGGCTGAGGATCATGGGGCCCCGAGCCCTCTTCTTGCTGCTGTCGGGGACC CTGGCCCTGACTGGTACCCGGGAGGGTCCCCACTCCCTGAGGTATTTCGACACCGCCGTG TCCCGGCCCGACCGCGGGAAGCCCCGTTTCATCTCCGTCGGCTACGTGGACGACACGCAG TTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCGCGGGCGCCGTGGATA AAGCAGGAGGGGCAGGAGTGGCAGGAGTATTGGGATGAGGAGACGCGGAACGCCATGGGC AGCGCACAGACTTTCCGAGTGAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAG GCCGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACTGGCTCTTC CTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGAC CTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCG GCCGATGCGGCGGAGCAAATGAGAAGCTACCTGGAGGGCGCGTGTGTGGAGTGGCTCCAG AAATACCTGCAGATGGGGAATAACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTG ACCCGCCACCCCAGCTCTGACCTGGGGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTAC CCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAAGACATGGAG CTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTG CCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAGCCC CTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTTGGC CTGGTTCTCGTCCTGGTCGCTGGAGCCGTGGTGGCTGGAGTTGTGATCTGGAGGAAGACA CGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGACCAGGGC TCCGATGTGTCCCTTACCAAGGGTCCTAGAGTGTGAGACAACTGCCTTGTGGGGACTGAG GGACACAAGATTTGTTCACATCCCACTTTGTGACTTCAGATCCCCTGACTCCTATTTCTG CAGCTGCCTCTGAAAGTGTCTGTGTTCCTATGAGCATCCTGAGAGGAGGTGGGGACCCTG GCCCAGCCCTGCCCCCCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCCTGATCCT CTTTCCAGTTCTTGCAAGTGGGAGCTGGGCTGGGGGGGGGGGGGCACTGGACACCATCTC CATCCTTATCTTAACTTGACTGCCCTGAGTAATGACTTCCTGTTGAATTTGCTTTTTCTA ATTGGTGCCATGAGGAGTTGAGGGGATAATAAATGAGAGATTTCCTTAGTTTGAAAGAGG AAATAAATGGAAGGATTGAGAATCTTCCAGAATCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCACCGCGGTTCCCGGTTCTAAACTCTCCATCCATTCGCCTCGACTCCGCTTCTCTC CAGACTCCGAGGCTGAGGATCATGGGGCCCCGAGCCCTCTTCTTGCTGCTGTCGGGGACC CTGGCCCTGACTGGTACCCGGGAGGGTCCCCACTCCCTGAGGTATTTCGACACCGCCGTG TCCCGGCCCGACCGCGGGAAGCCCCGTTTCATCTCCGTCGGCTACGTGGACGACACGCAG TTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCGCGGGCGCCGTGGATA AAGCAGGAGGGGCAGGAGTGGCAGGAGTATTGGGATGAGGAGACGCGGAACGCCATGGGC AGCGCACAGACTTTCCGAGTGAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAG GCCGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCAGACTGGCTCTTC CTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGAC CTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCG GCCGATGCGGCGGAGCAAATGAGAAGCTACCTGGAGGGCGCGTGTGTGGAGTGGCTCCAG AAATACCTGCAGATGGGGAATAACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTG ACCCGCCACCCCAGCTCTGACCTGGGGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTAC CCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAAGACATGGAG CTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTG CCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAGCCC CTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTTGGC CTGGTTCTCGTCCTGGTCGCTGGAGCCGTGGTGGCTGGAGTTGTGATCTGGAGGAAGACA CGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGACCAGGGC TCCGATGTGTCCCTTACCAAGGGTCCTAGAGTGTGAGACAACTGCCTTGTGGGGACTGAG GGACACAAGATTTGTTCACATCCCACTTTGTGACTTCAGATCCCCTGACTCCTATTTCTG CAGCTGCCTCTGAAAGTGTCTGTGTTCCTATGAGCATCCTGAGAGGAGGTGGGGACCCTG GCCCAGCCCTGCCCCCCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCCTGATCCT CTTTCCAGTTCTTGCAAGTGGGAGCTGGGCTGGGGGGGGGGGGGCACTGGACACCATCTC CATCCTTATCTTAACTTGACTGCCCTGAGTAATGACTTCCTGTTGAATTTGCTTTTTCTA ATTGGTGCCATGAGGAGTTGAGGGGATAATAAATGAGAGATTTCCTTAGTTTGAAAGAGG AAATAAATGGAAGGATTGAGAATCTTCCAGAATCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 848-965, - strand, RNAz p=0.996054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 848-965, - strand, RNAz p=0.996054 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 149-425, gnl|bosTau2|chr23 (20551142-20551409) | |
| 149-425, gnl|Hg17|chr6 (31432710-31432443) | |
| 149-425, gnl|Mm7|chr17 (33358731-33358998) | |
| 458-708, gnl|bosTau2|chr20 (36655627-36655873) | |
| 458-708, gnl|Hg17|chr6 (31347071-31346829) | |
| 458-708, gnl|Mm7|chr17 (32077846-32077606) | |
| 751-965, gnl|bosTau2|chr23 (24252953-24252736) | |
| 751-965, gnl|Hg17|chr6 (26200939-26201156) | |
| 751-965, gnl|Mm7|chr13 (23071891-23071674) | |
| 976-1103, gnl|bosTau2|chr23 (23047794-23047665) | |
| 976-1103, gnl|canFam2|chr12 (3938333-3938669) | |
| 976-1103, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 976-1103, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 976-1103, gnl|galGal2|chr16_random (271111-271395) | |
| 976-1103, gnl|hg17|chr6 (30004005-30004367) | |
| 976-1103, gnl|Hg17|chr6 (30004212-30004350) | |
| 976-1103, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 976-1103, gnl|mm7|chr17 (35139276-35138931) | |
| 976-1103, gnl|Mm7|chr17 (34472588-34472477) | |
| 976-1103, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 976-1103, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 976-1103, gnl|panTro1|chr5 (30480794-30481160) | |
| 976-1103, gnl|rheMac2|chr4 (30877587-30877274) | |
| 976-1103, gnl|rn3|chr20 (1647265-1647597) | |
| 1170-1593, gnl|bosTau2|chr23 (24592887-24593301) | |
| 1170-1593, gnl|Hg17|chr6 (30338262-30338709) | |
| 1170-1593, gnl|Mm7|chr17 (33574982-33575409) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-425, gnl|bosTau2|chr23 (20551142-20551409) | |
| 149-425, gnl|Hg17|chr6 (31432710-31432443) | |
| 149-425, gnl|Mm7|chr17 (33358731-33358998) | |
| 458-708, gnl|bosTau2|chr20 (36655627-36655873) | |
| 458-708, gnl|Hg17|chr6 (31347071-31346829) | |
| 458-708, gnl|Mm7|chr17 (32077846-32077606) | |
| 751-965, gnl|bosTau2|chr23 (24252953-24252736) | |
| 751-965, gnl|Hg17|chr6 (26200939-26201156) | |
| 751-965, gnl|Mm7|chr13 (23071891-23071674) | |
| 976-1103, gnl|bosTau2|chr23 (23047794-23047665) | |
| 976-1103, gnl|canFam2|chr12 (3938333-3938669) | |
| 976-1103, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 976-1103, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 976-1103, gnl|galGal2|chr16_random (271111-271395) | |
| 976-1103, gnl|hg17|chr6 (30004005-30004367) | |
| 976-1103, gnl|Hg17|chr6 (30004212-30004350) | |
| 976-1103, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 976-1103, gnl|mm7|chr17 (35139276-35138931) | |
| 976-1103, gnl|Mm7|chr17 (34472588-34472477) | |
| 976-1103, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 976-1103, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 976-1103, gnl|panTro1|chr5 (30480794-30481160) | |
| 976-1103, gnl|rheMac2|chr4 (30877587-30877274) | |
| 976-1103, gnl|rn3|chr20 (1647265-1647597) | |
| 1170-1593, gnl|bosTau2|chr23 (24592887-24593301) | |
| 1170-1593, gnl|Hg17|chr6 (30338262-30338709) | |
| 1170-1593, gnl|Mm7|chr17 (33574982-33575409) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cov (0.792917) | |
| fty (0.703359) | |
| ill (0.526778) | |
| jca (0.34188) | |
| lnt (0.284616) | |
| cty (0.20816) | |
| jej (0.197844) | |
| aor (0.195274) | |
| csk (0.140746) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.792917) | |
| fty (0.703359) | |
| ill (0.526778) | |
| jca (0.34188) | |
| lnt (0.284616) | |
| cty (0.20816) | |
| jej (0.197844) | |
| aor (0.195274) | |
| csk (0.140746) | |
| eje (0.0988338) |