Ss1.1-LyN1-MLN01A010006.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTGGCTGCGCTCGGTGGCTTCTGCTTGAGGACTGCTGATAGCAATATGTCTTCAGGA AATGCCAAAATTGGGCACCGTGCCCCCCACTTCAAAGCAACTGCTGTTATGCCAGATGGT CAGTTCAAAGATATCAGCTTATCTGACTACAAAGGAAAATACGTGGTGTTCTTCTTTTAC CCACTTGACTTCACCTTTGTGTGCCCCACGGAGATCATTGCTTTCAGTGAGAGGGCAGAA GAATTTAAGAAACTCAACTGCCAAGTGATTGGTGCTTCTGTGGATTCTCACTTCTGTCAT CTGGCCTGGATCAACACCCCCAAGAAGCAAGGAGGACTGGGACCCATGAACATTCCCTTG ATATCAGACCCCAAGCGCACCATTGCGCAGGACTACGGGGTCTTGAAGGCCGACGAAGGC ATCTCATTCAGGGGCCTTTTTATCATTGACGATAAAGGTATTCTTCGACAGATCACCATA AATGACCTTCCTGTTGGCCGCTCCGTGGATGAGACTCTGAGACTAGTTCAGGCCTTCCAG TTCACTGATAAACATGGGGAAGTGTGCCCGGCTGGTTGGAAGCCTGGCAGTGATACCATC AAGCCTGATGTCCAGAAGAGCAAAGAATATTTCTCTAAACAGAAGTGAGCGCTGGGCCAT CTCAGGGCCAGGCGGCAGTGGGTGTCCATGAGAACAACGTCTTTTGTACTATTGTCATGC TTAAAACACAAGACCTTATACTCAGCTCAGATGTGTGGGACAGGACAGGCCTTTCTTGCA GGGGTTAGGGAGGCCAGACTTTTCTTCCTCGGGAGGAAATGGCCTGCGCTTTAATTACGT GGCAGGCCGACTGGTGTGTCAGTAGCAGGGTTCCACTTTTGACCTTTTGTAGTTCCTATT AAACCTGAACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTGGCTGCGCTCGGTGGCTTCTGCTTGAGGACTGCTGATAGCAATATGTCTTCAGGA AATGCCAAAATTGGGCACCGTGCCCCCCACTTCAAAGCAACTGCTGTTATGCCAGATGGT CAGTTCAAAGATATCAGCTTATCTGACTACAAAGGAAAATACGTGGTGTTCTTCTTTTAC CCACTTGACTTCACCTTTGTGTGCCCCACGGAGATCATTGCTTTCAGTGAGAGGGCAGAA GAATTTAAGAAACTCAACTGCCAAGTGATTGGTGCTTCTGTGGATTCTCACTTCTGTCAT CTGGCCTGGATCAACACCCCCAAGAAGCAAGGAGGACTGGGACCCATGAACATTCCCTTG ATATCAGACCCCAAGCGCACCATTGCGCAGGACTACGGGGTCTTGAAGGCCGACGAAGGC ATCTCATTCAGGGGCCTTTTTATCATTGACGATAAAGGTATTCTTCGACAGATCACCATA AATGACCTTCCTGTTGGCCGCTCCGTGGATGAGACTCTGAGACTAGTTCAGGCCTTCCAG TTCACTGATAAACATGGGGAAGTGTGCCCGGCTGGTTGGAAGCCTGGCAGTGATACCATC AAGCCTGATGTCCAGAAGAGCAAAGAATATTTCTCTAAACAGAAGTGAGCGCTGGGCCAT CTCAGGGCCAGGCGGCAGTGGGTGTCCATGAGAACAACGTCTTTTGTACTATTGTCATGC TTAAAACACAAGACCTTATACTCAGCTCAGATGTGTGGGACAGGACAGGCCTTTCTTGCA GGGGTTAGGGAGGCCAGACTTTTCTTCCTCGGGAGGAAATGGCCTGCGCTTTAATTACGT GGCAGGCCGACTGGTGTGTCAGTAGCAGGGTTCCACTTTTGACCTTTTGTAGTTCCTATT AAACCTGAACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 509-627, - strand, RNAz p=0.795864 | |
| 718-863, - strand, RNAz p=0.99735 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 509-627, - strand, RNAz p=0.795864 | |
| 718-863, - strand, RNAz p=0.99735 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 2-927, gnl|bosTau2|chr6 (2085955-2085062) | |
| 2-927, gnl|Hg17|chr9 (12963496-12962554) | |
| 2-927, gnl|Mm7|chr8 (127853577-127854449) | |
| 192-327, gnl|bosTau2|chr26 (26036264-26036399) | |
| 192-327, gnl|canFam2|chr16 (19793689-19793823) | |
| 192-327, gnl|canFam2|chr16 (19793687-19793839) | |
| 192-327, gnl|canFam2|chr19 (53108155-53108022) | |
| 192-327, gnl|canFam2|chr28 (32399798-32399957) | |
| 192-327, gnl|danRer3|chr13 (9584331-9584197) | |
| 192-327, gnl|danRer3|chr13 (9584197-9584330) | |
| 192-327, gnl|danRer3|chr13 (9584333-9584182) | |
| 192-327, gnl|danRer3|chr13 (9584338-9584194) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2050-2181) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2181-2051) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2048-2197) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2049-2198) | |
| 192-327, gnl|echTel1|scaffold_297356 (35709-35843) | |
| 192-327, gnl|echTel1|scaffold_297356 (35843-35710) | |
| 192-327, gnl|echTel1|scaffold_297356 (35707-35843) | |
| 192-327, gnl|echTel1|scaffold_297356 (35702-35869) | |
| 192-327, gnl|fr1|chrUn (184924488-184924354) | |
| 192-327, gnl|fr1|chrUn (184924490-184924354) | |
| 192-327, gnl|fr1|chrUn (184924495-184924343) | |
| 192-327, gnl|galGal2|chr6 (29056351-29056479) | |
| 192-327, gnl|galGal2|chr6 (29056479-29056346) | |
| 192-327, gnl|galGal2|chr6 (29056341-29056491) | |
| 192-327, gnl|hg17|chr10 (120923234-120923394) | |
| 192-327, gnl|Hg17|chr10 (120923374-120923239) | |
| 192-327, gnl|hg17|chr13 (38089877-38090029) | |
| 192-327, gnl|hg17|chr22 (37443568-37443698) | |
| 192-327, gnl|hg17|chr3 (64135409-64135540) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4767-4901) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4901-4768) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4765-4917) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4760-4918) | |
| 192-327, gnl|mm7|chr19 (60792714-60792848) | |
| 192-327, gnl|mm7|chr19 (60792848-60792715) | |
| 192-327, gnl|mm7|chr19 (35570912-35570772) | |
| 192-327, gnl|mm7|chr19 (60792710-60792868) | |
| 192-327, gnl|Mm7|chr19 (60792847-60792712) | |
| 192-327, gnl|monDom2|scaffold_14 (41217560-41217400) | |
| 192-327, gnl|monDom2|scaffold_54 (1790618-1790484) | |
| 192-327, gnl|monDom2|scaffold_54 (1790484-1790617) | |
| 192-327, gnl|monDom2|scaffold_54 (1790620-1790468) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6663-6797) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6797-6664) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6661-6813) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6662-6797) | |
| 192-327, gnl|panTro1|chr14 (37478129-37478281) | |
| 192-327, gnl|panTro1|chr23 (37677289-37677419) | |
| 192-327, gnl|panTro1|chr23 (37677289-37677419) | |
| 192-327, gnl|panTro1|chrUn_random (24156946-24156815) | |
| 192-327, gnl|rheMac2|chr10 (82637395-82637524) | |
| 192-327, gnl|rheMac2|chr17 (17760040-17760192) | |
| 192-327, gnl|rheMac2|chr2 (72226148-72226015) | |
| 192-327, gnl|rheMac2|chr9 (118795027-118795187) | |
| 192-327, gnl|rn3|chr1 (107389222-107389357) | |
| 192-327, gnl|rn3|chr1 (107389357-107389223) | |
| 192-327, gnl|rn3|chr1 (240236436-240236300) | |
| 192-327, gnl|rn3|chr1 (267687132-267687289) | |
| 192-327, gnl|tetNig1|chr17 (541099-541233) | |
| 192-327, gnl|tetNig1|chr17 (541233-541100) | |
| 192-327, gnl|tetNig1|chr17 (541097-541233) | |
| 192-327, gnl|tetNig1|chr17 (541092-541238) | |
| 192-327, gnl|xenTro1|scaffold_337 (794610-794476) | |
| 192-327, gnl|xenTro1|scaffold_337 (794476-794600) | |
| 192-327, gnl|xenTro1|scaffold_337 (794617-794457) | |
| 718-926, gnl|bosTau2|chr29 (21698097-21698306) | |
| 718-926, gnl|Hg17|chr9 (12962761-12962548) | |
| 718-926, gnl|Mm7|chr18 (64608271-64608092) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-927, gnl|bosTau2|chr6 (2085955-2085062) | |
| 2-927, gnl|Hg17|chr9 (12963496-12962554) | |
| 2-927, gnl|Mm7|chr8 (127853577-127854449) | |
| 192-327, gnl|bosTau2|chr26 (26036264-26036399) | |
| 192-327, gnl|canFam2|chr16 (19793689-19793823) | |
| 192-327, gnl|canFam2|chr16 (19793687-19793839) | |
| 192-327, gnl|canFam2|chr19 (53108155-53108022) | |
| 192-327, gnl|canFam2|chr28 (32399798-32399957) | |
| 192-327, gnl|danRer3|chr13 (9584331-9584197) | |
| 192-327, gnl|danRer3|chr13 (9584197-9584330) | |
| 192-327, gnl|danRer3|chr13 (9584333-9584182) | |
| 192-327, gnl|danRer3|chr13 (9584338-9584194) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2050-2181) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2181-2051) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2048-2197) | |
| 192-327, gnl|dasNov1|scaffold_145514 (2049-2198) | |
| 192-327, gnl|echTel1|scaffold_297356 (35709-35843) | |
| 192-327, gnl|echTel1|scaffold_297356 (35843-35710) | |
| 192-327, gnl|echTel1|scaffold_297356 (35707-35843) | |
| 192-327, gnl|echTel1|scaffold_297356 (35702-35869) | |
| 192-327, gnl|fr1|chrUn (184924488-184924354) | |
| 192-327, gnl|fr1|chrUn (184924490-184924354) | |
| 192-327, gnl|fr1|chrUn (184924495-184924343) | |
| 192-327, gnl|galGal2|chr6 (29056351-29056479) | |
| 192-327, gnl|galGal2|chr6 (29056479-29056346) | |
| 192-327, gnl|galGal2|chr6 (29056341-29056491) | |
| 192-327, gnl|hg17|chr10 (120923234-120923394) | |
| 192-327, gnl|Hg17|chr10 (120923374-120923239) | |
| 192-327, gnl|hg17|chr13 (38089877-38090029) | |
| 192-327, gnl|hg17|chr22 (37443568-37443698) | |
| 192-327, gnl|hg17|chr3 (64135409-64135540) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4767-4901) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4901-4768) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4765-4917) | |
| 192-327, gnl|loxAfr1|scaffold_48811 (4760-4918) | |
| 192-327, gnl|mm7|chr19 (60792714-60792848) | |
| 192-327, gnl|mm7|chr19 (60792848-60792715) | |
| 192-327, gnl|mm7|chr19 (35570912-35570772) | |
| 192-327, gnl|mm7|chr19 (60792710-60792868) | |
| 192-327, gnl|Mm7|chr19 (60792847-60792712) | |
| 192-327, gnl|monDom2|scaffold_14 (41217560-41217400) | |
| 192-327, gnl|monDom2|scaffold_54 (1790618-1790484) | |
| 192-327, gnl|monDom2|scaffold_54 (1790484-1790617) | |
| 192-327, gnl|monDom2|scaffold_54 (1790620-1790468) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6663-6797) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6797-6664) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6661-6813) | |
| 192-327, gnl|oryCun1|scaffold_116095 (6662-6797) | |
| 192-327, gnl|panTro1|chr14 (37478129-37478281) | |
| 192-327, gnl|panTro1|chr23 (37677289-37677419) | |
| 192-327, gnl|panTro1|chr23 (37677289-37677419) | |
| 192-327, gnl|panTro1|chrUn_random (24156946-24156815) | |
| 192-327, gnl|rheMac2|chr10 (82637395-82637524) | |
| 192-327, gnl|rheMac2|chr17 (17760040-17760192) | |
| 192-327, gnl|rheMac2|chr2 (72226148-72226015) | |
| 192-327, gnl|rheMac2|chr9 (118795027-118795187) | |
| 192-327, gnl|rn3|chr1 (107389222-107389357) | |
| 192-327, gnl|rn3|chr1 (107389357-107389223) | |
| 192-327, gnl|rn3|chr1 (240236436-240236300) | |
| 192-327, gnl|rn3|chr1 (267687132-267687289) | |
| 192-327, gnl|tetNig1|chr17 (541099-541233) | |
| 192-327, gnl|tetNig1|chr17 (541233-541100) | |
| 192-327, gnl|tetNig1|chr17 (541097-541233) | |
| 192-327, gnl|tetNig1|chr17 (541092-541238) | |
| 192-327, gnl|xenTro1|scaffold_337 (794610-794476) | |
| 192-327, gnl|xenTro1|scaffold_337 (794476-794600) | |
| 192-327, gnl|xenTro1|scaffold_337 (794617-794457) | |
| 718-926, gnl|bosTau2|chr29 (21698097-21698306) | |
| 718-926, gnl|Hg17|chr9 (12962761-12962548) | |
| 718-926, gnl|Mm7|chr18 (64608271-64608092) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| jej (1.28598) | |
| ton (1.2285) | |
| duo (1.20961) | |
| nje (1.16144) | |
| cga (1.11638) | |
| eep (1.10308) | |
| cly (1.08578) | |
| nlu (0.958405) | |
| amn (0.835422) | |
| nco (0.808669) | |
| ese (0.759013) | |
| ill (0.702371) | |
| nmm (0.664011) | |
| cov (0.660764) | |
| csp (0.644745) | |
| cag (0.604778) | |
| eru (0.60024) | |
| jca (0.569801) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| ssp (0.406559) | |
| nbm (0.397298) | |
| fcc (0.39557) | |
| col (0.390016) | |
| thg (0.380373) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| sme (0.305437) | |
| eje (0.296501) | |
| fat (0.294855) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (1.28598) | |
| ton (1.2285) | |
| duo (1.20961) | |
| nje (1.16144) | |
| cga (1.11638) | |
| eep (1.10308) | |
| cly (1.08578) | |
| nlu (0.958405) | |
| amn (0.835422) | |
| nco (0.808669) | |
| ese (0.759013) | |
| ill (0.702371) | |
| nmm (0.664011) | |
| cov (0.660764) | |
| csp (0.644745) | |
| cag (0.604778) | |
| eru (0.60024) | |
| jca (0.569801) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| ssp (0.406559) | |
| nbm (0.397298) | |
| fcc (0.39557) | |
| col (0.390016) | |
| thg (0.380373) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| sme (0.305437) | |
| eje (0.296501) | |
| fat (0.294855) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ldo (0.0970026) |