Non-Coding RNA Search

Ss1.1-LyN1-MLN01A010053.5

Sequence:


               
               GCAGGCCTAGCCTGGCTTTGGACCCCAGGCCTTCCAGCCGGGGACTCTGCGCCTGCGCCC
GCCGGGGCGCTGCCTGCTCTCCCGGCGCGGCCGCGGTACCGGCTGCAGCGCGCCGCCTGG
GTGTCTGGGTGATCCATGGGCTGCAGCGAGGGCCGCGATGACAGATTACGGCGAGGAGCA
GCGCAACGAGCTGGAGGCTCTGGAGTCCATCTATCCTGACTCCTTCACAGTATTATCAGA
AAATCCACCCAGCTTCACCATTACTGTGACATCTGAGGCTGGAGAAAATGATGAAACTGT
CCAGACTACTCTCAAGTTTACATACAGTGAAAAATATCCAGATGAAGCCCCCCTTTATGA
AATATTCTCCCAGTTAAATCTAGAAGATAATGATGTCTCAGACATTTTAAAATTATTAGC
ATTACAGGCAGAAGAAAACCTCGGTATGGTGATGATCTTTACTTTAGTGACAGCTGTGCA
AGAAAAATTAAATGAAATAGTAGATCAAATAAAAACTAGAAGAGAAGAAGAAAAGAAACA
AAAAGAAAAAGAAGCAGAGGAAGCTGAAAAGCAATTATTCCATGGCACTCCTGTGACAAT
TGAGAATTTCTTAAGTTGGAAGGCCAAGTTTGATGCAGAACTCTTGGAAATTAAAAAGAA
ACGAATGAAAGAAGAAGAGCAAGCAGGAAAAAATAAATTAAGTGGGCGACAGCTATTTGA
AACAGATCATAATCTTGACACATCTGATATCCAGTTCTTGGAAGATGCTGGAAACAATGT
GGAGGTAGATGAGTCTTTGTTCCAGGAAATGGATGACTTGGAGCTGGAGGATGATGAGGA
TGATCCAGACTACAATCCTGCTGACCCGGAGAGCGACTTGACCGATTAATGGACTGTCCC
CTTCTGCAGAGAGGCTTGACTGCCACAGCATCTGTGGCTATGCTGAGAGGGTGTTGATGT
TCCTTTCTTTTTTCTAAGAAAAAATAATTTTCAGGAGAATATTCTTCTGATAGCTTTCAT
CATTGAACTTAATAAACTGATCTTAAAATTTCAAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCCTAGCCTGGCTTTGGACCCCAGGCCTTCCAGCCGGGGACTCTGCGCCTGCGCCC
GCCGGGGCGCTGCCTGCTCTCCCGGCGCGGCCGCGGTACCGGCTGCAGCGCGCCGCCTGG
GTGTCTGGGTGATCCATGGGCTGCAGCGAGGGCCGCGATGACAGATTACGGCGAGGAGCA
GCGCAACGAGCTGGAGGCTCTGGAGTCCATCTATCCTGACTCCTTCACAGTATTATCAGA
AAATCCACCCAGCTTCACCATTACTGTGACATCTGAGGCTGGAGAAAATGATGAAACTGT
CCAGACTACTCTCAAGTTTACATACAGTGAAAAATATCCAGATGAAGCCCCCCTTTATGA
AATATTCTCCCAGTTAAATCTAGAAGATAATGATGTCTCAGACATTTTAAAATTATTAGC
ATTACAGGCAGAAGAAAACCTCGGTATGGTGATGATCTTTACTTTAGTGACAGCTGTGCA
AGAAAAATTAAATGAAATAGTAGATCAAATAAAAACTAGAAGAGAAGAAGAAAAGAAACA
AAAAGAAAAAGAAGCAGAGGAAGCTGAAAAGCAATTATTCCATGGCACTCCTGTGACAAT
TGAGAATTTCTTAAGTTGGAAGGCCAAGTTTGATGCAGAACTCTTGGAAATTAAAAAGAA
ACGAATGAAAGAAGAAGAGCAAGCAGGAAAAAATAAATTAAGTGGGCGACAGCTATTTGA
AACAGATCATAATCTTGACACATCTGATATCCAGTTCTTGGAAGATGCTGGAAACAATGT
GGAGGTAGATGAGTCTTTGTTCCAGGAAATGGATGACTTGGAGCTGGAGGATGATGAGGA
TGATCCAGACTACAATCCTGCTGACCCGGAGAGCGACTTGACCGATTAATGGACTGTCCC
CTTCTGCAGAGAGGCTTGACTGCCACAGCATCTGTGGCTATGCTGAGAGGGTGTTGATGT
TCCTTTCTTTTTTCTAAGAAAAAATAATTTTCAGGAGAATATTCTTCTGATAGCTTTCAT
CATTGAACTTAATAAACTGATCTTAAAATTTCAAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RWDD1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               RWDD1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               221-334, - strand, RNAz p=0.578349
               

               
               668-867, - strand, RNAz p=0.858393
               

               
               904-1019, - strand, RNAz p=0.651493

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-334, - strand, RNAz p=0.578349
               

               
               668-867, - strand, RNAz p=0.858393
               

               
               904-1019, - strand, RNAz p=0.651493

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               221-402, gnl|bosTau2|chr23 (15358472-15358658)
               

               
               221-402, gnl|Hg17|chr12 (75653503-75653675)
               

               
               221-402, gnl|Mm7|chr2 (87407373-87407202)
               


               
               496-1075, gnl|bosTau2|chr23 (17231642-17232226)
               

               
               496-1075, gnl|Hg17|chr12 (75653751-75654328)
               

               
               496-1075, gnl|Mm7|chr2 (87407125-87406511)
               


               
               625-1069, gnl|bosTau2|chr15 (40107888-40108307)
               

               
               625-1069, gnl|Hg17|chr12 (75653904-75654345)
               

               
               625-1069, gnl|Mm7|chr4 (94328474-94328892)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-402, gnl|bosTau2|chr23 (15358472-15358658)
               

               
               221-402, gnl|Hg17|chr12 (75653503-75653675)
               

               
               221-402, gnl|Mm7|chr2 (87407373-87407202)
               


               
               496-1075, gnl|bosTau2|chr23 (17231642-17232226)
               

               
               496-1075, gnl|Hg17|chr12 (75653751-75654328)
               

               
               496-1075, gnl|Mm7|chr2 (87407125-87406511)
               


               
               625-1069, gnl|bosTau2|chr15 (40107888-40108307)
               

               
               625-1069, gnl|Hg17|chr12 (75653904-75654345)
               

               
               625-1069, gnl|Mm7|chr4 (94328474-94328892)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

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               cbe (1.91388)
               

               
               cte (1.4637)
               

               
               vin (1.33023)
               

               
               lin (1.31043)
               

               
               amn (1.25313)
               

               
               sto (1.07894)
               

               
               gul (1.06553)
               

               
               ret (1.02987)
               

               
               bfe (0.899146)
               

               
               cki (0.826173)
               

               
               cmu (0.745573)
               

               
               pan (0.707881)
               

               
               csk (0.70373)
               

               
               lyg (0.665513)
               

               
               kid (0.648677)
               

               
               ova (0.645661)
               

               
               aor (0.585823)
               

               
               cst (0.560146)
               

               
               bla (0.497389)
               

               
               fco (0.471624)
               

               
               med (0.465008)
               

               
               spc (0.453463)
               

               
               hea (0.408998)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.91388)
               

               
               cte (1.4637)
               

               
               vin (1.33023)
               

               
               lin (1.31043)
               

               
               amn (1.25313)
               

               
               sto (1.07894)
               

               
               gul (1.06553)
               

               
               ret (1.02987)
               

               
               bfe (0.899146)
               

               
               cki (0.826173)
               

               
               cmu (0.745573)
               

               
               pan (0.707881)
               

               
               csk (0.70373)
               

               
               lyg (0.665513)
               

               
               kid (0.648677)
               

               
               ova (0.645661)
               

               
               aor (0.585823)
               

               
               cst (0.560146)
               

               
               bla (0.497389)
               

               
               fco (0.471624)
               

               
               med (0.465008)
               

               
               spc (0.453463)
               

               
               hea (0.408998)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	221-334, - strand, RNAz p=0.578349
	668-867, - strand, RNAz p=0.858393
	904-1019, - strand, RNAz p=0.651493

	221-402, gnl\|bosTau2\|chr23 (15358472-15358658)
	221-402, gnl\|Hg17\|chr12 (75653503-75653675)
	221-402, gnl\|Mm7\|chr2 (87407373-87407202)

	496-1075, gnl\|bosTau2\|chr23 (17231642-17232226)
	496-1075, gnl\|Hg17\|chr12 (75653751-75654328)
	496-1075, gnl\|Mm7\|chr2 (87407125-87406511)

	625-1069, gnl\|bosTau2\|chr15 (40107888-40108307)
	625-1069, gnl\|Hg17\|chr12 (75653904-75654345)
	625-1069, gnl\|Mm7\|chr4 (94328474-94328892)

	cbe (1.91388)
	cte (1.4637)
	vin (1.33023)
	lin (1.31043)
	amn (1.25313)
	sto (1.07894)
	gul (1.06553)
	ret (1.02987)
	bfe (0.899146)
	cki (0.826173)
	cmu (0.745573)
	pan (0.707881)
	csk (0.70373)
	lyg (0.665513)
	kid (0.648677)
	ova (0.645661)
	aor (0.585823)
	cst (0.560146)
	bla (0.497389)
	fco (0.471624)
	med (0.465008)
	spc (0.453463)
	hea (0.408998)
	thg (0.380373)
	tra (0.369276)
	rec (0.346141)
	cje (0.330469)
	sme (0.305437)
	lun (0.300978)
	fat (0.294855)
	ski (0.29347)
	che (0.272628)
	ssp (0.271039)
	sug (0.254582)
	clu (0.239292)
	mgp (0.230681)
	tes (0.207814)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	ill (0.175593)
	cut (0.169924)
	mga (0.160205)
	tbr (0.154178)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	hlv (0.139256)
	ste (0.135208)
	pgl (0.118483)
	ebs (0.118301)
	ldo (0.0970026)