Non-Coding RNA Search

Ss1.1-LyN1-MLN01A010088.5

Sequence:


               
               CACTACCGGGCAGGCGGCGGGGCCATGGGGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCG
GGCATGGGCATGGACCCCAGCACGGCCGGGGGGGTGCCCTTTGGCCTCTACACCCCCGCC
TCCCGGGGCACCGGCGACTCGGAGAGGGCGCCCGGCGGCGGAGGGTCGGCGTCCGACTCC
ACCTATGCCCACGGCAATGGTTACCAGGAGACGGGCGGCGGTCACCATAGAGACGGGATG
CTGTACCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACTGTTCTTCGTTA
GGTTTATTTTCTTTATTCCAAGTAAAGTGCCCCATTTGCTCCAAGTCTGTGGCTTCCGAT
GAGATGGAAATGCACTTTATAATGTGTCTGAGCAAACCTCGCCTCTCCTACAATGATGAC
GTGCTGACTAAAGATGCAGGGGAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGAC
ACGATAGCCAGGCTGCCCTGCCTGTGCATTTATCACAAAAGTTGCATAGACTCATGGTTT
GAAGTGAACAGATCTTGTCCAGAACACCCCGCGGATTGACCCTGCTGGGCTCGCTTGCTG
ACTCCTCTCAAAGGGACAGCCAGGCCCCCCCCCGCCCCCGTTCCTGAGAGGAGGCTTCGG
ACCCTGGGGCAGAGCTGAGCTGGGGACACCCGTGGGAACAGGGCGCCCCTCCTGCACTGA
CTTCCAGAGATGGTTCTCCCTTTCTCCCCGAGGACACCAGACTGGATGAGCGCGCGTTTG
CCAGAAGGAAGAACCACCCGCTCTCCTTCCCTCATCCTCATCCCAGGAGGGAAAGGGCAT
TTTCTTTTTCACTTTCGAAAGGCGTTGTGGGTCTGTCTCTAAAGTGTTTACAAAAAAAAC
TATAAAAACAAAAAAACAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTACCGGGCAGGCGGCGGGGCCATGGGGCTGCGCAGCCGCTCGGTCAGCTCGGTGGCG
GGCATGGGCATGGACCCCAGCACGGCCGGGGGGGTGCCCTTTGGCCTCTACACCCCCGCC
TCCCGGGGCACCGGCGACTCGGAGAGGGCGCCCGGCGGCGGAGGGTCGGCGTCCGACTCC
ACCTATGCCCACGGCAATGGTTACCAGGAGACGGGCGGCGGTCACCATAGAGACGGGATG
CTGTACCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACTGTTCTTCGTTA
GGTTTATTTTCTTTATTCCAAGTAAAGTGCCCCATTTGCTCCAAGTCTGTGGCTTCCGAT
GAGATGGAAATGCACTTTATAATGTGTCTGAGCAAACCTCGCCTCTCCTACAATGATGAC
GTGCTGACTAAAGATGCAGGGGAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGAC
ACGATAGCCAGGCTGCCCTGCCTGTGCATTTATCACAAAAGTTGCATAGACTCATGGTTT
GAAGTGAACAGATCTTGTCCAGAACACCCCGCGGATTGACCCTGCTGGGCTCGCTTGCTG
ACTCCTCTCAAAGGGACAGCCAGGCCCCCCCCCGCCCCCGTTCCTGAGAGGAGGCTTCGG
ACCCTGGGGCAGAGCTGAGCTGGGGACACCCGTGGGAACAGGGCGCCCCTCCTGCACTGA
CTTCCAGAGATGGTTCTCCCTTTCTCCCCGAGGACACCAGACTGGATGAGCGCGCGTTTG
CCAGAAGGAAGAACCACCCGCTCTCCTTCCCTCATCCTCATCCCAGGAGGGAAAGGGCAT
TTTCTTTTTCACTTTCGAAAGGCGTTGTGGGTCTGTCTCTAAAGTGTTTACAAAAAAAAC
TATAAAAACAAAAAAACAAAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26326569|dbj|BAC27028.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26326569|dbj|BAC27028.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               399-521, + strand, RNAz p=0.932138
               

               
               737-854, - strand, RNAz p=0.952053

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-521, + strand, RNAz p=0.932138
               

               
               737-854, - strand, RNAz p=0.952053

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               399-521, gnl|bosTau2|chr18 (1364978-1365097)
               

               
               399-521, gnl|Hg17|chr16 (73696171-73696288)
               

               
               399-521, gnl|Mm7|chr8 (110219239-110219356)
               


               
               621-922, gnl|bosTau2|chr18 (1367665-1367966)
               

               
               621-922, gnl|canFam2|chr5 (78600842-78600205)
               

               
               621-922, gnl|dasNov1|scaffold_16934 (83631-84301)
               

               
               621-922, gnl|echTel1|scaffold_250313 (1651-1019)
               

               
               621-922, gnl|hg17|chr16 (73698735-73699376)
               

               
               621-922, gnl|Hg17|chr16 (73699129-73699427)
               

               
               621-922, gnl|loxAfr1|scaffold_36466 (17823-18459)
               

               
               621-922, gnl|mm7|chr8 (110222440-110223064)
               

               
               621-922, gnl|Mm7|chr8 (110222841-110223118)
               

               
               621-922, gnl|monDom2|scaffold_63 (10686444-10687110)
               

               
               621-922, gnl|oryCun1|scaffold_172761 (46126-45479)
               

               
               621-922, gnl|panTro1|chr18 (68092182-68092824)
               

               
               621-922, gnl|rheMac2|chr20 (73219882-73220530)
               

               
               621-922, gnl|rn3|chr19 (41543580-41544218)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               399-521, gnl|bosTau2|chr18 (1364978-1365097)
               

               
               399-521, gnl|Hg17|chr16 (73696171-73696288)
               

               
               399-521, gnl|Mm7|chr8 (110219239-110219356)
               


               
               621-922, gnl|bosTau2|chr18 (1367665-1367966)
               

               
               621-922, gnl|canFam2|chr5 (78600842-78600205)
               

               
               621-922, gnl|dasNov1|scaffold_16934 (83631-84301)
               

               
               621-922, gnl|echTel1|scaffold_250313 (1651-1019)
               

               
               621-922, gnl|hg17|chr16 (73698735-73699376)
               

               
               621-922, gnl|Hg17|chr16 (73699129-73699427)
               

               
               621-922, gnl|loxAfr1|scaffold_36466 (17823-18459)
               

               
               621-922, gnl|mm7|chr8 (110222440-110223064)
               

               
               621-922, gnl|Mm7|chr8 (110222841-110223118)
               

               
               621-922, gnl|monDom2|scaffold_63 (10686444-10687110)
               

               
               621-922, gnl|oryCun1|scaffold_172761 (46126-45479)
               

               
               621-922, gnl|panTro1|chr18 (68092182-68092824)
               

               
               621-922, gnl|rheMac2|chr20 (73219882-73220530)
               

               
               621-922, gnl|rn3|chr19 (41543580-41544218)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fty (0.351679)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	399-521, + strand, RNAz p=0.932138
	737-854, - strand, RNAz p=0.952053

	399-521, gnl\|bosTau2\|chr18 (1364978-1365097)
	399-521, gnl\|Hg17\|chr16 (73696171-73696288)
	399-521, gnl\|Mm7\|chr8 (110219239-110219356)

	621-922, gnl\|bosTau2\|chr18 (1367665-1367966)
	621-922, gnl\|canFam2\|chr5 (78600842-78600205)
	621-922, gnl\|dasNov1\|scaffold_16934 (83631-84301)
	621-922, gnl\|echTel1\|scaffold_250313 (1651-1019)
	621-922, gnl\|hg17\|chr16 (73698735-73699376)
	621-922, gnl\|Hg17\|chr16 (73699129-73699427)
	621-922, gnl\|loxAfr1\|scaffold_36466 (17823-18459)
	621-922, gnl\|mm7\|chr8 (110222440-110223064)
	621-922, gnl\|Mm7\|chr8 (110222841-110223118)
	621-922, gnl\|monDom2\|scaffold_63 (10686444-10687110)
	621-922, gnl\|oryCun1\|scaffold_172761 (46126-45479)
	621-922, gnl\|panTro1\|chr18 (68092182-68092824)
	621-922, gnl\|rheMac2\|chr20 (73219882-73220530)
	621-922, gnl\|rn3\|chr19 (41543580-41544218)

	fty (0.351679)
	ill (0.175593)
	duo (0.172801)
	nco (0.161734)
	fat (0.147427)
	nmm (0.132802)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)