Non-Coding RNA Search

Ss1.1-LyN1-MLN01A010094.5

Sequence:


               
               TGTTGAATATGTGCCTCTGAGTACAGGAATTCCAAAGCGGATTATTTGGATTGCGGATCA
GTGACAGTTTTTGGCAAGCCTAGTTGGATGAGGACAGTCTCCTTTTCCTCTGCGTTTGTG
AACCTTGTGATGAAAGTGCTCCCGCCCTTTTCTGAGAACAGAAAGCCTGACTCAGGCAGG
CAGCTGCTGCTCTTAAAACAGCTCGAGCCGGCAGCCTCCCCTGCTGGGGTGAGCGCCACC
GCAGAGATGAAGCTGAAGCTGTCGAACTGGTGCTGGCTGAGCTCCGCTGTCCTCGCGGCT
TATGGCTTTTTGGTCGTGGCCAACAATGAGACGGAGGAAATTAAAGATGAAGCAGCCAAG
GACGCCTGCCCGGTGAGACTAGAAAGCAGAGGGAAATGCGAAGAGGTAGGCGGGTGTCCC
TACCAGGTGAACCTGCCCCCCTTGACTCTTCAGCTCCCCAAGCAGTTTGGCAGGATTGAG
GAGGTGTTCAAAGAGGTCCAGAACCTCAAGGAAATTGTGAACAGCCTGAAGAAGACTTGC
CAAGACTGCAGACTGCAGGCTGACGACAACCGAGACCCAGGCAGGAATGGACTGCTGTCA
CCGGGCACAGGAGCCCCGGGAGAAGCTGATGACAGCAGAGTTAGAGAATTGGAGAACGAG
GTTAACAAGCTGTCCTCTGACCTGAAGAATGCCAAGGAAGAGATCGACGGGCTTCAGGGT
CGCCTGGAGAAGCTGAGCCTTGTAAATATGAACAACATAGAAAATTACGTTGATAACAAG
GTGGCAAACCTAACGTTTGCTGTCAATAGTTTGGATGGCAAATGTTCATCGCGGTGTCCC
AGTCAAGAACAAATACAGTCACGTCCGGTTCAACATCTTATATATAAAGATTGCTCTGAA
TACTACACAATAGGCAAAAGGAGCAGTGAGATCTACAGAGTTACACCGGATCCCAAAAAC
AGTAGCTTTGAAGTTTACTGTGACATGGAGACCATGGGGGGAGGCTGGACAGTGCTGCAG
GCACGTCTTGATGGAAGCACCAACTTCACCAGAACATGGCGAGACTACAAAGTTGGCTTT
GGAAACCTCAGAAGAGAATTTTGGTTGGGGAATGATAAAATTCATCTTCTGACTAAGAGT
AAGGATATGATTCTAAGAATAGATCTTGAGGACTTTAATGGTATCAAGCTCTATGCCTTG
TATGATCACTTTTATGTGGCCAACGAGTTTCTCAAATACCGTCTACACATTGGTAACTAT
AACGGCACCGCTGGAGATGCCTTGCGTTTCAGTAAACATTACAACCATGACATGAAGTAT
TTCACCACCCCAGATAGAGACAACGATCGATATCCCTCTGGGAACTGTGGGCTCTACTAC
AGCTCGGGTTGGTGGTTTGATGCTTGTCTTTCTGCAAACTTAAATGGCAAATATTATAAC
CAAAAATACAGAGGTGTTCGAAATGGGATTTTCTGGGGCACCTGGCCTGGTATAAGTGAG
GCACAACCTGGTGGCTACAGGTCCTCTTTCAAAGAAGCCAAAATGATGATCAGACCCAAG
TACTTTAAGCCATAAATCACTAATGCTTATTCCTCTGGGTATTCATTTCCTAATAGGGCA
ATTAATTCCTTCAGCACTTTGGAATGTGTTTCATACTCCTCTTCATGGCTTAAAACTTAT
CTCTGAGCAATGGGTTCTTATGCTATACAGGATTTGAAATAAAGCTGAAAAATATGCCTT
GTAAAGAAGTCCTTTGTTGCTGTTACACTGTTATCCAAATAAACACTTGCAAGCAAGGGG
AATATTGAGAATTACACATTAGATTTATAATTCTCTTACTTTCTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGAATATGTGCCTCTGAGTACAGGAATTCCAAAGCGGATTATTTGGATTGCGGATCA
GTGACAGTTTTTGGCAAGCCTAGTTGGATGAGGACAGTCTCCTTTTCCTCTGCGTTTGTG
AACCTTGTGATGAAAGTGCTCCCGCCCTTTTCTGAGAACAGAAAGCCTGACTCAGGCAGG
CAGCTGCTGCTCTTAAAACAGCTCGAGCCGGCAGCCTCCCCTGCTGGGGTGAGCGCCACC
GCAGAGATGAAGCTGAAGCTGTCGAACTGGTGCTGGCTGAGCTCCGCTGTCCTCGCGGCT
TATGGCTTTTTGGTCGTGGCCAACAATGAGACGGAGGAAATTAAAGATGAAGCAGCCAAG
GACGCCTGCCCGGTGAGACTAGAAAGCAGAGGGAAATGCGAAGAGGTAGGCGGGTGTCCC
TACCAGGTGAACCTGCCCCCCTTGACTCTTCAGCTCCCCAAGCAGTTTGGCAGGATTGAG
GAGGTGTTCAAAGAGGTCCAGAACCTCAAGGAAATTGTGAACAGCCTGAAGAAGACTTGC
CAAGACTGCAGACTGCAGGCTGACGACAACCGAGACCCAGGCAGGAATGGACTGCTGTCA
CCGGGCACAGGAGCCCCGGGAGAAGCTGATGACAGCAGAGTTAGAGAATTGGAGAACGAG
GTTAACAAGCTGTCCTCTGACCTGAAGAATGCCAAGGAAGAGATCGACGGGCTTCAGGGT
CGCCTGGAGAAGCTGAGCCTTGTAAATATGAACAACATAGAAAATTACGTTGATAACAAG
GTGGCAAACCTAACGTTTGCTGTCAATAGTTTGGATGGCAAATGTTCATCGCGGTGTCCC
AGTCAAGAACAAATACAGTCACGTCCGGTTCAACATCTTATATATAAAGATTGCTCTGAA
TACTACACAATAGGCAAAAGGAGCAGTGAGATCTACAGAGTTACACCGGATCCCAAAAAC
AGTAGCTTTGAAGTTTACTGTGACATGGAGACCATGGGGGGAGGCTGGACAGTGCTGCAG
GCACGTCTTGATGGAAGCACCAACTTCACCAGAACATGGCGAGACTACAAAGTTGGCTTT
GGAAACCTCAGAAGAGAATTTTGGTTGGGGAATGATAAAATTCATCTTCTGACTAAGAGT
AAGGATATGATTCTAAGAATAGATCTTGAGGACTTTAATGGTATCAAGCTCTATGCCTTG
TATGATCACTTTTATGTGGCCAACGAGTTTCTCAAATACCGTCTACACATTGGTAACTAT
AACGGCACCGCTGGAGATGCCTTGCGTTTCAGTAAACATTACAACCATGACATGAAGTAT
TTCACCACCCCAGATAGAGACAACGATCGATATCCCTCTGGGAACTGTGGGCTCTACTAC
AGCTCGGGTTGGTGGTTTGATGCTTGTCTTTCTGCAAACTTAAATGGCAAATATTATAAC
CAAAAATACAGAGGTGTTCGAAATGGGATTTTCTGGGGCACCTGGCCTGGTATAAGTGAG
GCACAACCTGGTGGCTACAGGTCCTCTTTCAAAGAAGCCAAAATGATGATCAGACCCAAG
TACTTTAAGCCATAAATCACTAATGCTTATTCCTCTGGGTATTCATTTCCTAATAGGGCA
ATTAATTCCTTCAGCACTTTGGAATGTGTTTCATACTCCTCTTCATGGCTTAAAACTTAT
CTCTGAGCAATGGGTTCTTATGCTATACAGGATTTGAAATAAAGCTGAAAAATATGCCTT
GTAAAGAAGTCCTTTGTTGCTGTTACACTGTTATCCAAATAAACACTTGCAAGCAAGGGG
AATATTGAGAATTACACATTAGATTTATAATTCTCTTACTTTCTTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52346216|ref|NP_001005152.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52346216|ref|NP_001005152.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-223, - strand, RNAz p=0.540851
               

               
               1310-1469, + strand, RNAz p=0.923857

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-223, - strand, RNAz p=0.540851
               

               
               1310-1469, + strand, RNAz p=0.923857

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-862, gnl|bosTau2|chr4 (20081758-20082623)
               

               
               1-862, gnl|Hg17|chr7 (76474005-76473155)
               

               
               1-862, gnl|Mm7|chr5 (20410191-20411004)
               


               
               871-1844, gnl|bosTau2|chr4 (20085096-20086071)
               

               
               871-1844, gnl|Hg17|chr7 (76470948-76469979)
               

               
               871-1844, gnl|Mm7|chr5 (20412961-20413908)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-862, gnl|bosTau2|chr4 (20081758-20082623)
               

               
               1-862, gnl|Hg17|chr7 (76474005-76473155)
               

               
               1-862, gnl|Mm7|chr5 (20410191-20411004)
               


               
               871-1844, gnl|bosTau2|chr4 (20085096-20086071)
               

               
               871-1844, gnl|Hg17|chr7 (76470948-76469979)
               

               
               871-1844, gnl|Mm7|chr5 (20412961-20413908)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               cbl (1.26277)
               

               
               gul (0.887942)
               

               
               jca (0.45584)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.26277)
               

               
               gul (0.887942)
               

               
               jca (0.45584)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	115-223, - strand, RNAz p=0.540851
	1310-1469, + strand, RNAz p=0.923857

	1-862, gnl\|bosTau2\|chr4 (20081758-20082623)
	1-862, gnl\|Hg17\|chr7 (76474005-76473155)
	1-862, gnl\|Mm7\|chr5 (20410191-20411004)

	871-1844, gnl\|bosTau2\|chr4 (20085096-20086071)
	871-1844, gnl\|Hg17\|chr7 (76470948-76469979)
	871-1844, gnl\|Mm7\|chr5 (20412961-20413908)

	cbl (1.26277)
	gul (0.887942)
	jca (0.45584)
	lin (0.436808)
	amn (0.417711)
	aor (0.390549)
	bla (0.373042)
	nep (0.36785)
	sin (0.349895)
	vin (0.332557)
	fat (0.294855)
	liv (0.292569)
	spl (0.286369)
	ste (0.270416)
	ova (0.258264)
	sug (0.254582)
	mgp (0.230681)
	cmu (0.186393)
	sto (0.179824)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	lnt (0.142308)
	csk (0.140746)
	pla (0.133672)
	ret (0.128733)
	tra (0.123092)
	med (0.116252)
	cty (0.10408)
	ldo (0.0970026)