Ss1.1-LyN1-MLN01A010101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCGGAAGTGGTGACCGGAGCGGAAGTGGAGCCGCCGCCACCGCCGCCGCCGATTCCGG AGCCGGGGTAGCTGCTGCCGCCGCCGCCACTGCAGCTGCCGCCGCTGCCGCCAGAGGAGT GGGCTTGGGAAAGAAGCGGTCACCGCGCCGGGAGCTCCGCTCGCAAGCTTTTTTGCCCCC TGCAGCCCTCCCACGGGAATGACCATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTC GCCGAGCAGGCTGAGCGCTATGATGACATGGCCGCGGCCATGAAGGCAGTCACGGAGCAG GGGCACGAACTCTCCAACGAGGAGAGAAACCTGCTCTCCGTCGCCTACAAGAACGTAGTC GGTGCCCGCCGTTCTTCCTGGCGTGTCATCTCCAGCATCGAGCAGAAAACAGAGAGGAAC GAGAAGAAGCAGCAGATGGGCAAAGAGTACCGTGAGAAGATCGAGGCAGAGCTGCAGGAC ATCTGCAACGATGTTCTGGAGCTGTTGGACAAATACCTAATTCCCAATGCTACACAACCA GAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGATATCTTTCTGAGGTG GCGTCTGGAGACAATAAACAAACCACTGTGTCGAACTCCCAGCAGGCCTACCAGGAAGCA TTTGAAATTAGTAAGAAAGAAATGCAGCCTACACACCCAATTCGACTGGGCCTGGCACTT AATTTCTCCGTCTTTTACTATGAGATTCTAAACTCTCCTGAAAAGGCTTGCAGCCTGGCA AAAACGGCATTTGATGAAGCAATTGCTGAATTGGACACCCTGAATGAAGAGTCCTACAAA GACAGCACCCTGATCATGCAGTTGCTCAGGGACAATCTCACTCTGTGGACGTCGGAAAAC CAGGGAGATGAAGGCGATACTGGGGAGGGAGAGAACTAATGTCTGTCGTGCTGCGTGATC TCTTCAGTGTCACTCTGTACCCTCCACATATACCCCTTTGTGCGATAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCGGAAGTGGTGACCGGAGCGGAAGTGGAGCCGCCGCCACCGCCGCCGCCGATTCCGG AGCCGGGGTAGCTGCTGCCGCCGCCGCCACTGCAGCTGCCGCCGCTGCCGCCAGAGGAGT GGGCTTGGGAAAGAAGCGGTCACCGCGCCGGGAGCTCCGCTCGCAAGCTTTTTTGCCCCC TGCAGCCCTCCCACGGGAATGACCATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTC GCCGAGCAGGCTGAGCGCTATGATGACATGGCCGCGGCCATGAAGGCAGTCACGGAGCAG GGGCACGAACTCTCCAACGAGGAGAGAAACCTGCTCTCCGTCGCCTACAAGAACGTAGTC GGTGCCCGCCGTTCTTCCTGGCGTGTCATCTCCAGCATCGAGCAGAAAACAGAGAGGAAC GAGAAGAAGCAGCAGATGGGCAAAGAGTACCGTGAGAAGATCGAGGCAGAGCTGCAGGAC ATCTGCAACGATGTTCTGGAGCTGTTGGACAAATACCTAATTCCCAATGCTACACAACCA GAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGATATCTTTCTGAGGTG GCGTCTGGAGACAATAAACAAACCACTGTGTCGAACTCCCAGCAGGCCTACCAGGAAGCA TTTGAAATTAGTAAGAAAGAAATGCAGCCTACACACCCAATTCGACTGGGCCTGGCACTT AATTTCTCCGTCTTTTACTATGAGATTCTAAACTCTCCTGAAAAGGCTTGCAGCCTGGCA AAAACGGCATTTGATGAAGCAATTGCTGAATTGGACACCCTGAATGAAGAGTCCTACAAA GACAGCACCCTGATCATGCAGTTGCTCAGGGACAATCTCACTCTGTGGACGTCGGAAAAC CAGGGAGATGAAGGCGATACTGGGGAGGGAGAGAACTAATGTCTGTCGTGCTGCGTGATC TCTTCAGTGTCACTCTGTACCCTCCACATATACCCCTTTGTGCGATAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-196, gnl|bosTau2|chr13 (55874395-55874204) | |
| 2-196, gnl|Hg17|chr20 (42947739-42947942) | |
| 2-196, gnl|Mm7|chr2 (163736036-163736256) | |
| 203-499, gnl|bosTau2|chr11 (68309327-68309623) | |
| 203-499, gnl|Hg17|chr2 (9721181-9720885) | |
| 203-499, gnl|Mm7|chr12 (19776498-19776202) | |
| 522-798, gnl|bosTau2|chr8 (8728882-8729153) | |
| 522-798, gnl|Hg17|chr10 (23466175-23466450) | |
| 522-798, gnl|Mm7|chr3 (92795779-92796056) | |
| 634-787, gnl|bosTau2|chr11 (68336850-68337003) | |
| 634-787, gnl|canFam2|chr17 (9636934-9637120) | |
| 634-787, gnl|danRer3|chr20 (36800273-36800472) | |
| 634-787, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 634-787, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 634-787, gnl|fr1|chrUn (134354687-134354513) | |
| 634-787, gnl|galGal2|chr3 (94531091-94531273) | |
| 634-787, gnl|hg17|chr2 (9678883-9679079) | |
| 634-787, gnl|Hg17|chr2 (9679044-9678891) | |
| 634-787, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 634-787, gnl|mm7|chr12 (19755678-19755874) | |
| 634-787, gnl|Mm7|chr12 (19755839-19755686) | |
| 634-787, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 634-787, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 634-787, gnl|panTro1|chr12 (10327875-10328071) | |
| 634-787, gnl|rheMac2|chr5 (109582222-109582058) | |
| 634-787, gnl|rn3|chr6 (41953778-41953972) | |
| 634-787, gnl|tetNig1|chr9 (6333152-6332962) | |
| 634-787, gnl|xenTro1|scaffold_469 (7842-8023) | |
| 883-1020, gnl|bosTau2|chr13 (55854414-55854277) | |
| 883-1020, gnl|Hg17|chr20 (42968437-42968573) | |
| 883-1020, gnl|Mm7|chr2 (163757559-163757696) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-196, gnl|bosTau2|chr13 (55874395-55874204) | |
| 2-196, gnl|Hg17|chr20 (42947739-42947942) | |
| 2-196, gnl|Mm7|chr2 (163736036-163736256) | |
| 203-499, gnl|bosTau2|chr11 (68309327-68309623) | |
| 203-499, gnl|Hg17|chr2 (9721181-9720885) | |
| 203-499, gnl|Mm7|chr12 (19776498-19776202) | |
| 522-798, gnl|bosTau2|chr8 (8728882-8729153) | |
| 522-798, gnl|Hg17|chr10 (23466175-23466450) | |
| 522-798, gnl|Mm7|chr3 (92795779-92796056) | |
| 634-787, gnl|bosTau2|chr11 (68336850-68337003) | |
| 634-787, gnl|canFam2|chr17 (9636934-9637120) | |
| 634-787, gnl|danRer3|chr20 (36800273-36800472) | |
| 634-787, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 634-787, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 634-787, gnl|fr1|chrUn (134354687-134354513) | |
| 634-787, gnl|galGal2|chr3 (94531091-94531273) | |
| 634-787, gnl|hg17|chr2 (9678883-9679079) | |
| 634-787, gnl|Hg17|chr2 (9679044-9678891) | |
| 634-787, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 634-787, gnl|mm7|chr12 (19755678-19755874) | |
| 634-787, gnl|Mm7|chr12 (19755839-19755686) | |
| 634-787, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 634-787, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 634-787, gnl|panTro1|chr12 (10327875-10328071) | |
| 634-787, gnl|rheMac2|chr5 (109582222-109582058) | |
| 634-787, gnl|rn3|chr6 (41953778-41953972) | |
| 634-787, gnl|tetNig1|chr9 (6333152-6332962) | |
| 634-787, gnl|xenTro1|scaffold_469 (7842-8023) | |
| 883-1020, gnl|bosTau2|chr13 (55854414-55854277) | |
| 883-1020, gnl|Hg17|chr20 (42968437-42968573) | |
| 883-1020, gnl|Mm7|chr2 (163757559-163757696) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| cut (1.01954) | |
| cki (0.826173) | |
| lin (0.582411) | |
| cmu (0.55918) | |
| ssp (0.542079) | |
| spl (0.429553) | |
| pty (0.428143) | |
| cty (0.41632) | |
| nep (0.36785) | |
| ill (0.351185) | |
| ton (0.351) | |
| rec (0.346141) | |
| lnt (0.284616) | |
| ste (0.270416) | |
| ret (0.257467) | |
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (1.01954) | |
| cki (0.826173) | |
| lin (0.582411) | |
| cmu (0.55918) | |
| ssp (0.542079) | |
| spl (0.429553) | |
| pty (0.428143) | |
| cty (0.41632) | |
| nep (0.36785) | |
| ill (0.351185) | |
| ton (0.351) | |
| rec (0.346141) | |
| lnt (0.284616) | |
| ste (0.270416) | |
| ret (0.257467) | |
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| cly (0.120642) | |
| spc (0.113366) | |
| nbm (0.0993246) |