Non-Coding RNA Search

Ss1.1-LyN1-MLN01A030052.5

Sequence:


               
               AGAGCGAGGCTGGGGTAGAGAGGCCGACTGAGCAGGAATCGTCCGCTTGTCGTGGAGGCT
GCTAGGGAGCCGGCGAGAGGGTGAGCGGGCGAGCAGGCAAGCAGGCGAGCGAGCTAGAGC
AGGAAGGAGGGAGAGTCGCGCGGCACAGAGGCGCGCCGGGGCTGGGCCGAGGCGGAACCC
ACAGCCGGAGAGGGGCAGCCTGAGCCGGGCGCCGCGGGGTCCCCACCCCCACTCGGCCGG
ACAGTGCCCGGTGTTCCCCCGTGCGGGGGGCGGCGGCGGCGGCGGCGGCTGACGGGACCG
GACAAGACCGCGGGGGTGTTGCCACCTCCACCGAGGAGCCGGCGCGACCGCGGGCTCCTC
AGAGCCGGGGCCCAGGGCCCGTGACAGACGGGCCGAGGAAAGGAGAGAGGCGGCGGCGGC
GCAGGCGACGGGGAGGCAGCGGCGACACCATGTCATCCCCTAGTCCGGGCAAGAGGCGGA
TGGACACAGACGTGGTCAAGCTCATTGAGAGTAAGCATGAGGTTACAATCCTGGGAGGAC
TCAATGAATTTGTAGTGAAGTTTTATGGACCACAGGGAACACCGTATGAAGGTGGAGTTT
GGAAAGTTAGAGTGGATCTTCCTGATAAATACCCTTTCAAATCTCCATCTATAGGATTCA
TGAATAAAATTTTCCATCCCAACATTGATGAAGCGTCAGGAACTGTGTGTCTAGATGTAA
TTAATCAAACTTGGACAGCTCTCTATGATCTTACCAATATATTTGAGTCTTTTAGAGATG
TTGAGACACTGCCTAAAAAAATGTTGTTTGGATTTTCTTCTCTGGTTTAAGATGTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCGAGGCTGGGGTAGAGAGGCCGACTGAGCAGGAATCGTCCGCTTGTCGTGGAGGCT
GCTAGGGAGCCGGCGAGAGGGTGAGCGGGCGAGCAGGCAAGCAGGCGAGCGAGCTAGAGC
AGGAAGGAGGGAGAGTCGCGCGGCACAGAGGCGCGCCGGGGCTGGGCCGAGGCGGAACCC
ACAGCCGGAGAGGGGCAGCCTGAGCCGGGCGCCGCGGGGTCCCCACCCCCACTCGGCCGG
ACAGTGCCCGGTGTTCCCCCGTGCGGGGGGCGGCGGCGGCGGCGGCGGCTGACGGGACCG
GACAAGACCGCGGGGGTGTTGCCACCTCCACCGAGGAGCCGGCGCGACCGCGGGCTCCTC
AGAGCCGGGGCCCAGGGCCCGTGACAGACGGGCCGAGGAAAGGAGAGAGGCGGCGGCGGC
GCAGGCGACGGGGAGGCAGCGGCGACACCATGTCATCCCCTAGTCCGGGCAAGAGGCGGA
TGGACACAGACGTGGTCAAGCTCATTGAGAGTAAGCATGAGGTTACAATCCTGGGAGGAC
TCAATGAATTTGTAGTGAAGTTTTATGGACCACAGGGAACACCGTATGAAGGTGGAGTTT
GGAAAGTTAGAGTGGATCTTCCTGATAAATACCCTTTCAAATCTCCATCTATAGGATTCA
TGAATAAAATTTTCCATCCCAACATTGATGAAGCGTCAGGAACTGTGTGTCTAGATGTAA
TTAATCAAACTTGGACAGCTCTCTATGATCTTACCAATATATTTGAGTCTTTTAGAGATG
TTGAGACACTGCCTAAAAAAATGTTGTTTGGATTTTCTTCTCTGGTTTAAGATGTTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094853|gb|EAL24099.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094853|gb|EAL24099.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.613617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.613617

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182697, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182697, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-502, gnl|bosTau2|chr4 (49140939-49141443)
               

               
               1-502, gnl|Hg17|chr7 (129186751-129186294)
               

               
               1-502, gnl|Mm7|chr6 (30236679-30236198)
               


               
               695-838, gnl|bosTau2|chr4 (49217249-49217391)
               

               
               695-838, gnl|Hg17|chr7 (129091354-129091211)
               

               
               695-838, gnl|Mm7|chr6 (30173570-30173430)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr4 (49140939-49141443)
               

               
               1-502, gnl|Hg17|chr7 (129186751-129186294)
               

               
               1-502, gnl|Mm7|chr6 (30236679-30236198)
               


               
               695-838, gnl|bosTau2|chr4 (49217249-49217391)
               

               
               695-838, gnl|Hg17|chr7 (129091354-129091211)
               

               
               695-838, gnl|Mm7|chr6 (30173570-30173430)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               cmu (0.186393)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cmu (0.186393)

	1-502, gnl\|bosTau2\|chr4 (49140939-49141443)
	1-502, gnl\|Hg17\|chr7 (129186751-129186294)
	1-502, gnl\|Mm7\|chr6 (30236679-30236198)

	695-838, gnl\|bosTau2\|chr4 (49217249-49217391)
	695-838, gnl\|Hg17\|chr7 (129091354-129091211)
	695-838, gnl\|Mm7\|chr6 (30173570-30173430)