Ss1.1-LyN1-MLN01A030059.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGTTCGCTTTGGGCCTGAAGCCTTAGGCGGCCTGGTGGTTTTAGCACGATGAGCTCA ATCGGCACCGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGTTTTTCAA GTTGAATATGCTATGAAGGCTGTGGAAAATAGTAGTACAGCTATTGGAATCAGGTGTAAA GATGGCGTTGTCTTTGGGGTGGAAAAATTAGTCCTTTCTAAACTTTATGAAGAAGGATCC AACAAACGACTTTTTAATGTTGATCGGCATGTTGGAATGGCAGTAGCAGGTTTGTTGGCA GATGCTCGTTCTTTAGCAGACATTGCAAGAGAAGAGGCTTCCAACTTTAGGTCTAACTTT GGATATAACATTCCACTAAAACATCTTGCAGACAGAGTGGCCATGTATGTACATGCCTAT ACCCTCTACAGTGCTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACAGTGTG AATGATGGTGCACAACTCTACATGATTGACCCATCGGGTGTTTCGTATGGTTATTGGGGT TGTGCCATTGGCAAAGCCAGGCAAGCTGCAAAGACAGAAATTGAAAAGCTTCAGATGAAA GAAATGACCTGCCGTGATGTTGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGAT GAAGTTAAGGATAAAGCTTTTGAACTAGAGCTCAGCTGGGTTGGTGAAATAACAAAAGGA AGACATGAAATTGTTCCAAAAGATATAAGGGAAGAGGCAGAGAAATACGCTAAGGAATCT TTGAAGGAAGAAGATGAATCAGATGATGATAACATGTAACACCTACTTCAGCATCTATTT TAAATTTCTAATACAGTCCCGTGTATTATTCAGCCCTGTGGATTACTATATACCCACTAC CAGTTTTCATTAAATTCTTGTCTTATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGTTCGCTTTGGGCCTGAAGCCTTAGGCGGCCTGGTGGTTTTAGCACGATGAGCTCA ATCGGCACCGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGATGGAAGAGTTTTTCAA GTTGAATATGCTATGAAGGCTGTGGAAAATAGTAGTACAGCTATTGGAATCAGGTGTAAA GATGGCGTTGTCTTTGGGGTGGAAAAATTAGTCCTTTCTAAACTTTATGAAGAAGGATCC AACAAACGACTTTTTAATGTTGATCGGCATGTTGGAATGGCAGTAGCAGGTTTGTTGGCA GATGCTCGTTCTTTAGCAGACATTGCAAGAGAAGAGGCTTCCAACTTTAGGTCTAACTTT GGATATAACATTCCACTAAAACATCTTGCAGACAGAGTGGCCATGTATGTACATGCCTAT ACCCTCTACAGTGCTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACAGTGTG AATGATGGTGCACAACTCTACATGATTGACCCATCGGGTGTTTCGTATGGTTATTGGGGT TGTGCCATTGGCAAAGCCAGGCAAGCTGCAAAGACAGAAATTGAAAAGCTTCAGATGAAA GAAATGACCTGCCGTGATGTTGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGAT GAAGTTAAGGATAAAGCTTTTGAACTAGAGCTCAGCTGGGTTGGTGAAATAACAAAAGGA AGACATGAAATTGTTCCAAAAGATATAAGGGAAGAGGCAGAGAAATACGCTAAGGAATCT TTGAAGGAAGAAGATGAATCAGATGATGATAACATGTAACACCTACTTCAGCATCTATTT TAAATTTCTAATACAGTCCCGTGTATTATTCAGCCCTGTGGATTACTATATACCCACTAC CAGTTTTCATTAAATTCTTGTCTTATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 154-280, gnl|bosTau2|chr10 (48094839-48094713) | |
| 154-280, gnl|canFam2|chr3 (16938371-16938267) | |
| 154-280, gnl|canFam2|chr8 (36657226-36657368) | |
| 154-280, gnl|danRer3|chr21 (29593957-29594099) | |
| 154-280, gnl|danRer3|chr21 (29594082-29593977) | |
| 154-280, gnl|dasNov1|scaffold_126973 (203-346) | |
| 154-280, gnl|dasNov1|scaffold_15287 (4582-4687) | |
| 154-280, gnl|echTel1|scaffold_265723 (14979-14853) | |
| 154-280, gnl|echTel1|scaffold_325359 (37178-37074) | |
| 154-280, gnl|fr1|chrUn (93232050-93231921) | |
| 154-280, gnl|fr1|chrUn (93231925-93232030) | |
| 154-280, gnl|galGal2|chr5 (52026181-52026040) | |
| 154-280, gnl|hg17|chr1 (33647217-33647321) | |
| 154-280, gnl|hg17|chr14 (57788589-57788730) | |
| 154-280, gnl|Hg17|chr14 (57788588-57788714) | |
| 154-280, gnl|loxAfr1|scaffold_147 (182222-182080) | |
| 154-280, gnl|loxAfr1|scaffold_147 (182097-182202) | |
| 154-280, gnl|mm7|chr12 (68927157-68927299) | |
| 154-280, gnl|Mm7|chr12 (68927156-68927282) | |
| 154-280, gnl|mm7|chr14 (47703143-47703247) | |
| 154-280, gnl|monDom2|scaffold_8 (70283132-70283271) | |
| 154-280, gnl|monDom2|scaffold_8 (67699472-67699577) | |
| 154-280, gnl|oryCun1|scaffold_92282 (1938-2080) | |
| 154-280, gnl|oryCun1|scaffold_92282 (2063-1958) | |
| 154-280, gnl|panTro1|chr1 (34385481-34385585) | |
| 154-280, gnl|panTro1|chr15 (57345360-57345501) | |
| 154-280, gnl|rheMac2|chr1 (36311241-36311345) | |
| 154-280, gnl|rheMac2|chr7 (121266450-121266592) | |
| 154-280, gnl|rn3|chr10 (64690551-64690656) | |
| 154-280, gnl|rn3|chr6 (93101953-93102095) | |
| 154-280, gnl|tetNig1|chrUn_random (83015857-83015998) | |
| 154-280, gnl|tetNig1|chrUn_random (83015984-83015882) | |
| 154-280, gnl|xenTro1|scaffold_33 (1302089-1301950) | |
| 773-929, gnl|bosTau2|chr10 (48080743-48080603) | |
| 773-929, gnl|canFam2|chr3 (16939033-16938920) | |
| 773-929, gnl|dasNov1|scaffold_15287 (3924-4034) | |
| 773-929, gnl|echTel1|scaffold_325359 (37850-37729) | |
| 773-929, gnl|hg17|chr1 (33646561-33646689) | |
| 773-929, gnl|Hg17|chr14 (57808320-57808476) | |
| 773-929, gnl|loxAfr1|scaffold_147 (169157-169263) | |
| 773-929, gnl|Mm7|chr12 (68938188-68938343) | |
| 773-929, gnl|mm7|chr14 (47702470-47702590) | |
| 773-929, gnl|monDom2|scaffold_8 (67698790-67698934) | |
| 773-929, gnl|oryCun1|scaffold_209233 (5020-4931) | |
| 773-929, gnl|panTro1|chr1 (34384825-34384953) | |
| 773-929, gnl|rheMac2|chr1 (36310612-36310734) | |
| 773-929, gnl|rn3|chr10 (64689890-64690005) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-280, gnl|bosTau2|chr10 (48094839-48094713) | |
| 154-280, gnl|canFam2|chr3 (16938371-16938267) | |
| 154-280, gnl|canFam2|chr8 (36657226-36657368) | |
| 154-280, gnl|danRer3|chr21 (29593957-29594099) | |
| 154-280, gnl|danRer3|chr21 (29594082-29593977) | |
| 154-280, gnl|dasNov1|scaffold_126973 (203-346) | |
| 154-280, gnl|dasNov1|scaffold_15287 (4582-4687) | |
| 154-280, gnl|echTel1|scaffold_265723 (14979-14853) | |
| 154-280, gnl|echTel1|scaffold_325359 (37178-37074) | |
| 154-280, gnl|fr1|chrUn (93232050-93231921) | |
| 154-280, gnl|fr1|chrUn (93231925-93232030) | |
| 154-280, gnl|galGal2|chr5 (52026181-52026040) | |
| 154-280, gnl|hg17|chr1 (33647217-33647321) | |
| 154-280, gnl|hg17|chr14 (57788589-57788730) | |
| 154-280, gnl|Hg17|chr14 (57788588-57788714) | |
| 154-280, gnl|loxAfr1|scaffold_147 (182222-182080) | |
| 154-280, gnl|loxAfr1|scaffold_147 (182097-182202) | |
| 154-280, gnl|mm7|chr12 (68927157-68927299) | |
| 154-280, gnl|Mm7|chr12 (68927156-68927282) | |
| 154-280, gnl|mm7|chr14 (47703143-47703247) | |
| 154-280, gnl|monDom2|scaffold_8 (70283132-70283271) | |
| 154-280, gnl|monDom2|scaffold_8 (67699472-67699577) | |
| 154-280, gnl|oryCun1|scaffold_92282 (1938-2080) | |
| 154-280, gnl|oryCun1|scaffold_92282 (2063-1958) | |
| 154-280, gnl|panTro1|chr1 (34385481-34385585) | |
| 154-280, gnl|panTro1|chr15 (57345360-57345501) | |
| 154-280, gnl|rheMac2|chr1 (36311241-36311345) | |
| 154-280, gnl|rheMac2|chr7 (121266450-121266592) | |
| 154-280, gnl|rn3|chr10 (64690551-64690656) | |
| 154-280, gnl|rn3|chr6 (93101953-93102095) | |
| 154-280, gnl|tetNig1|chrUn_random (83015857-83015998) | |
| 154-280, gnl|tetNig1|chrUn_random (83015984-83015882) | |
| 154-280, gnl|xenTro1|scaffold_33 (1302089-1301950) | |
| 773-929, gnl|bosTau2|chr10 (48080743-48080603) | |
| 773-929, gnl|canFam2|chr3 (16939033-16938920) | |
| 773-929, gnl|dasNov1|scaffold_15287 (3924-4034) | |
| 773-929, gnl|echTel1|scaffold_325359 (37850-37729) | |
| 773-929, gnl|hg17|chr1 (33646561-33646689) | |
| 773-929, gnl|Hg17|chr14 (57808320-57808476) | |
| 773-929, gnl|loxAfr1|scaffold_147 (169157-169263) | |
| 773-929, gnl|Mm7|chr12 (68938188-68938343) | |
| 773-929, gnl|mm7|chr14 (47702470-47702590) | |
| 773-929, gnl|monDom2|scaffold_8 (67698790-67698934) | |
| 773-929, gnl|oryCun1|scaffold_209233 (5020-4931) | |
| 773-929, gnl|panTro1|chr1 (34384825-34384953) | |
| 773-929, gnl|rheMac2|chr1 (36310612-36310734) | |
| 773-929, gnl|rn3|chr10 (64689890-64690005) |
| Expressed library(ies): 58 entry(ies) | More info |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
| cbe (1.43541) | |
| vin (1.33023) | |
| bfe (1.049) | |
| spl (1.00229) | |
| isp (0.75188) | |
| tra (0.738552) | |
| mgm (0.721371) | |
| mgp (0.692042) | |
| sug (0.636456) | |
| lun (0.601956) | |
| liv (0.585137) | |
| ste (0.540833) | |
| thg (0.507164) | |
| mga (0.480615) | |
| tbr (0.462535) | |
| spc (0.453463) | |
| hyp (0.42851) | |
| csk (0.422238) | |
| tes (0.415628) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| ldo (0.38801) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| ton (0.351) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| sme (0.305437) | |
| eje (0.296501) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| fco (0.157208) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 58 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.43541) | |
| vin (1.33023) | |
| bfe (1.049) | |
| spl (1.00229) | |
| isp (0.75188) | |
| tra (0.738552) | |
| mgm (0.721371) | |
| mgp (0.692042) | |
| sug (0.636456) | |
| lun (0.601956) | |
| liv (0.585137) | |
| ste (0.540833) | |
| thg (0.507164) | |
| mga (0.480615) | |
| tbr (0.462535) | |
| spc (0.453463) | |
| hyp (0.42851) | |
| csk (0.422238) | |
| tes (0.415628) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| ldo (0.38801) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| ton (0.351) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| sme (0.305437) | |
| eje (0.296501) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| fco (0.157208) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| nbm (0.0993246) |