Non-Coding RNA Search

Ss1.1-LyN1-MLN01A030065.5

Sequence:


               
               ATTAAAGTTTTTTGATGTCAGCCTTGCATCAAGGGCTTTATCAAAAAGTACAATAATAAA
CCCTCAGGTAGTGCTGGGCACGTAGGACTTTGCCATGAGCTGCTGCGTCAGACCAGCACT
AGGAAGGAGGACGGTTGTAAGCAGTCGTTATTTCCTGACATTGTGGTAACGTGAGGAGAG
GTTTGCGTATGTGTGTGGAACAGTGGGCTAACATATAATGAACATTGGATATTTAAGACA
CATGGTGTGCGATTTCTTTGTCCTGGTTACTCCCCTCCCCGGTTTCCTGCCAGAACCTTG
ATCTCAGTCAGCGCTCTCCCTGTGTGTTATTAGGATGCATGTACAGTCTTCTTGTGGCCC
GATCAAATACCACGTGCTTGAAATACTTAGATCTCTGCTTACTAACGTGCCCCCTGTACA
AGTCCCATCTGCCTTTGCATGATCTGATCATTACGTGGCTGTGGTTCCTAAGACTGTTGC
TGAAATAGTCGCCATTCAGCGGTGGAGTGATGTTTTCCAATGACAGATATTTTGCCTAAT
TCCTGGCATGACACTCTGATGACTTCCTAGTGAGGCCCGGCCATCCTGGTCCAGCTGGGT
CCCACTGTAACTCAGACATTCCAAGGGGAAGGGAAGCCATAGCCACACCTCGTGCTCTGG
ACATTTTGACAAGCAGGGTCCCCCCGACACAGCTTTGGGATCAGCCTCCACTCTCCCAAG
TTCACACTCTTCTGGAGCAGAGACCGTGATTTGGAATCAAGATGACTGTTGGAAACCACA
CTTCTGGAAACAGCCTGGACAACGGTCCCTTCAAGTCTGCCTGCTGCCCTTTAGGTCTGG
GGCCCTGCCGAGCGAGGCCTCTGCCCCCGCCCTTGAACCCTGGGGACTGATGGTGCTCAC
GACTCTTCCTCCGAGGGAAACTTAAGACCTCCACATTAAGTGGCTTTTTAAACAAGAAAA
AAAAAAAAAGGCAGCTGTAGCTCACGAGCTGCTCTTTTGCCAGCATTTTCACATTTTGCC
TTTCACGTGTCAGAAGCTCGTGCAGAGAAATTCCATGGTGGGAACATCTGAGGCGTCACC
GCGTAGAGCCTTGGTGAGGTGTGGATAAGGCCGAGGTGCCAGGCTGGGAGCATTTTGAGT
TGGGCTTGTTTGTCTGTTTTTTAAGTCCTGTATATGTATGTAGTAGTTTGGGTGTGTATA
TATCGTAGCATTTCAAATGGATATACTGGTTTAACCTCCTATCCTTGGAAAACAGATGGC
TCTCCATCTTGTCACACGTATGTTAGAGAAGTAGCGAGCTGCTCTGCTATATGCCTTAAG
CCAATATTTACTCATCAGGTCATTATTTTTTACGATGGCCATAGAATAAACCATTTGTAG
AAAAATAAAAACAAACAAAAAAAGCAAGGTGTTTTGGTATAATACCTTTTCAGGTGTGTG
TATATGTGGATGCATGAGGCGGGGGGTGGGGGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAGTTTTTTGATGTCAGCCTTGCATCAAGGGCTTTATCAAAAAGTACAATAATAAA
CCCTCAGGTAGTGCTGGGCACGTAGGACTTTGCCATGAGCTGCTGCGTCAGACCAGCACT
AGGAAGGAGGACGGTTGTAAGCAGTCGTTATTTCCTGACATTGTGGTAACGTGAGGAGAG
GTTTGCGTATGTGTGTGGAACAGTGGGCTAACATATAATGAACATTGGATATTTAAGACA
CATGGTGTGCGATTTCTTTGTCCTGGTTACTCCCCTCCCCGGTTTCCTGCCAGAACCTTG
ATCTCAGTCAGCGCTCTCCCTGTGTGTTATTAGGATGCATGTACAGTCTTCTTGTGGCCC
GATCAAATACCACGTGCTTGAAATACTTAGATCTCTGCTTACTAACGTGCCCCCTGTACA
AGTCCCATCTGCCTTTGCATGATCTGATCATTACGTGGCTGTGGTTCCTAAGACTGTTGC
TGAAATAGTCGCCATTCAGCGGTGGAGTGATGTTTTCCAATGACAGATATTTTGCCTAAT
TCCTGGCATGACACTCTGATGACTTCCTAGTGAGGCCCGGCCATCCTGGTCCAGCTGGGT
CCCACTGTAACTCAGACATTCCAAGGGGAAGGGAAGCCATAGCCACACCTCGTGCTCTGG
ACATTTTGACAAGCAGGGTCCCCCCGACACAGCTTTGGGATCAGCCTCCACTCTCCCAAG
TTCACACTCTTCTGGAGCAGAGACCGTGATTTGGAATCAAGATGACTGTTGGAAACCACA
CTTCTGGAAACAGCCTGGACAACGGTCCCTTCAAGTCTGCCTGCTGCCCTTTAGGTCTGG
GGCCCTGCCGAGCGAGGCCTCTGCCCCCGCCCTTGAACCCTGGGGACTGATGGTGCTCAC
GACTCTTCCTCCGAGGGAAACTTAAGACCTCCACATTAAGTGGCTTTTTAAACAAGAAAA
AAAAAAAAAGGCAGCTGTAGCTCACGAGCTGCTCTTTTGCCAGCATTTTCACATTTTGCC
TTTCACGTGTCAGAAGCTCGTGCAGAGAAATTCCATGGTGGGAACATCTGAGGCGTCACC
GCGTAGAGCCTTGGTGAGGTGTGGATAAGGCCGAGGTGCCAGGCTGGGAGCATTTTGAGT
TGGGCTTGTTTGTCTGTTTTTTAAGTCCTGTATATGTATGTAGTAGTTTGGGTGTGTATA
TATCGTAGCATTTCAAATGGATATACTGGTTTAACCTCCTATCCTTGGAAAACAGATGGC
TCTCCATCTTGTCACACGTATGTTAGAGAAGTAGCGAGCTGCTCTGCTATATGCCTTAAG
CCAATATTTACTCATCAGGTCATTATTTTTTACGATGGCCATAGAATAAACCATTTGTAG
AAAAATAAAAACAAACAAAAAAAGCAAGGTGTTTTGGTATAATACCTTTTCAGGTGTGTG
TATATGTGGATGCATGAGGCGGGGGGTGGGGGTGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-123, + strand, RNAz p=0.642129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-123, + strand, RNAz p=0.642129

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002827, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002827, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-439, gnl|bosTau2|chr13 (60078435-60078009)
               

               
               6-439, gnl|Hg17|chr20 (48633128-48633551)
               


               
               680-1471, gnl|bosTau2|chr13 (60077916-60077130)
               

               
               680-1471, gnl|Hg17|chr20 (48633799-48634583)
               

               
               680-1471, gnl|Mm7|chr2 (167771140-167771926)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-439, gnl|bosTau2|chr13 (60078435-60078009)
               

               
               6-439, gnl|Hg17|chr20 (48633128-48633551)
               


               
               680-1471, gnl|bosTau2|chr13 (60077916-60077130)
               

               
               680-1471, gnl|Hg17|chr20 (48633799-48634583)
               

               
               680-1471, gnl|Mm7|chr2 (167771140-167771926)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cmu (0.372787)
               

               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               ece (0.229305)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	6-439, gnl\|bosTau2\|chr13 (60078435-60078009)
	6-439, gnl\|Hg17\|chr20 (48633128-48633551)

	680-1471, gnl\|bosTau2\|chr13 (60077916-60077130)
	680-1471, gnl\|Hg17\|chr20 (48633799-48634583)
	680-1471, gnl\|Mm7\|chr2 (167771140-167771926)

	cmu (0.372787)
	ece (0.229305)
	cki (0.165235)
	csp (0.161186)
	hlv (0.139256)
	ova (0.129132)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)