Ss1.1-LyN1-MLN01A030079.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACTGGAAACTGCTGAGAAACCACTCTTTGTGGCTGGAAGGGTCCAAGGAGGGAGACGCC GGGCAGTACTGGTGCGCTATGGAGGGTCAGCACACACGTACCATAACTGGAGGGTCTATG ATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCGAGGGCCGCAGACGGATCCCCCTGCT CTGTCCTCTTGTGCTCTGTGGTCCCCGCCAGACGCCTGGACTCTGTGACCTGGCTGGAGG GGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGATGGGGCCGCCCTGCTCT TGGTGTGTCCTGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCCAGAATCATTCGCT GCCTCTTGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGGCTGGGATGTGCCCTGGA TCCTGATGCTCCTGCTCACAGTGGGCCAGGGGCTCACCATCCTGGTCCTCAGCATCATGC TCTGGAGGTGGAGGGTCCAGGGGGCTCGGCGCAGAGGAAATCGCATGCGGTGCTACGACT GTGGCGGCGGAGGCCCCCGCGGCTCCTGCCAGGAGACCGTGACCACGTGCCGGGAGGGCG AACGCTGCGGCTTCCTGGAGCGCAAACCCCAACCCCAGCTGGGACAGACCAAGCTATCTG GAAACCCCTCAGTGACCTTGATTCATCACCATCCAACCTGCGTGGCAGCCCAACATTGCA ACAAAGTGCAGACAGAGTTGGTGGGAGATGTGACTTACACGACCCACAGGGACTGCTGCG TCGGGGACCTGTGCAACAGCGCTGTGGCGAGCACCTCGGCCCCCATGTGCATCGTGGCTG CTGCAGCCACCGCCCTGGCCTGGTTCTTGCCAGGACTGTGGAGAGGGTAGTGGGAGCAGG GGAAGGGAAAGGAGCAAGGGAACGAAGGAGATCTGAGTTGGGAAGACGGACCCTCCTCTG TGAGCCATTAAAATCTATGGACCACTCCAGAGCTAACTGGAGAAATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACTGGAAACTGCTGAGAAACCACTCTTTGTGGCTGGAAGGGTCCAAGGAGGGAGACGCC GGGCAGTACTGGTGCGCTATGGAGGGTCAGCACACACGTACCATAACTGGAGGGTCTATG ATGTCTCCGTGTTCAGAGGATCCCAGTACTCCGCGAGGGCCGCAGACGGATCCCCCTGCT CTGTCCTCTTGTGCTCTGTGGTCCCCGCCAGACGCCTGGACTCTGTGACCTGGCTGGAGG GGAAGAGTTCCGTGAAGGGCCACTCGAAGTCCTTCTGGGGTGATGGGGCCGCCCTGCTCT TGGTGTGTCCTGGGGATGGACTACCCGAGCCCAGGGCACGGAGACCCAGAATCATTCGCT GCCTCTTGCCTCAGAACAAAGGGGTCAGCTTTAGCCTGGCAGGCTGGGATGTGCCCTGGA TCCTGATGCTCCTGCTCACAGTGGGCCAGGGGCTCACCATCCTGGTCCTCAGCATCATGC TCTGGAGGTGGAGGGTCCAGGGGGCTCGGCGCAGAGGAAATCGCATGCGGTGCTACGACT GTGGCGGCGGAGGCCCCCGCGGCTCCTGCCAGGAGACCGTGACCACGTGCCGGGAGGGCG AACGCTGCGGCTTCCTGGAGCGCAAACCCCAACCCCAGCTGGGACAGACCAAGCTATCTG GAAACCCCTCAGTGACCTTGATTCATCACCATCCAACCTGCGTGGCAGCCCAACATTGCA ACAAAGTGCAGACAGAGTTGGTGGGAGATGTGACTTACACGACCCACAGGGACTGCTGCG TCGGGGACCTGTGCAACAGCGCTGTGGCGAGCACCTCGGCCCCCATGTGCATCGTGGCTG CTGCAGCCACCGCCCTGGCCTGGTTCTTGCCAGGACTGTGGAGAGGGTAGTGGGAGCAGG GGAAGGGAAAGGAGCAAGGGAACGAAGGAGATCTGAGTTGGGAAGACGGACCCTCCTCTG TGAGCCATTAAAATCTATGGACCACTCCAGAGCTAACTGGAGAAATCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 256-375, + strand, RNAz p=0.776324 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 256-375, + strand, RNAz p=0.776324 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 137-403, gnl|bosTau2|chr23 (23358071-23358337) | |
| 137-403, gnl|canFam2|chr12 (4190065-4190365) | |
| 137-403, gnl|echTel1|scaffold_298757 (4513-4817) | |
| 137-403, gnl|hg17|chr6 (31783614-31783915) | |
| 137-403, gnl|Hg17|chr6 (31783625-31783891) | |
| 137-403, gnl|loxAfr1|scaffold_98215 (30105-30410) | |
| 137-403, gnl|mm7|chr17 (33180195-33179895) | |
| 137-403, gnl|Mm7|chr17 (33180183-33179917) | |
| 137-403, gnl|monDom2|scaffold_42 (17685364-17685062) | |
| 137-403, gnl|panTro1|chr5 (32184436-32184737) | |
| 137-403, gnl|rheMac2|chr4 (31352113-31352414) | |
| 137-403, gnl|rn3|chr20 (3803591-3803892) | |
| 515-666, gnl|bosTau2|chr23 (23364947-23365095) | |
| 515-666, gnl|canFam2|chr12 (4196612-4196889) | |
| 515-666, gnl|echTel1|scaffold_178550 (627-924) | |
| 515-666, gnl|hg17|chr6 (31791084-31791347) | |
| 515-666, gnl|Hg17|chr6 (31791256-31791380) | |
| 515-666, gnl|loxAfr1|scaffold_154047 (4-306) | |
| 515-666, gnl|mm7|chr17 (33171583-33171291) | |
| 515-666, gnl|Mm7|chr17 (33171404-33171265) | |
| 515-666, gnl|monDom2|scaffold_42 (17676541-17676213) | |
| 515-666, gnl|oryCun1|scaffold_198577 (83330-83625) | |
| 515-666, gnl|panTro1|chr5 (32191919-32192182) | |
| 515-666, gnl|rheMac2|chr4 (31360043-31360306) | |
| 515-666, gnl|rn3|chr20 (3813486-3813777) | |
| 667-934, gnl|bosTau2|chr23 (23366362-23366629) | |
| 667-934, gnl|canFam2|chr12 (4199900-4200366) | |
| 667-934, gnl|dasNov1|scaffold_199547 (4316-3836) | |
| 667-934, gnl|echTel1|scaffold_178550 (2788-3241) | |
| 667-934, gnl|hg17|chr6 (31793240-31793718) | |
| 667-934, gnl|Hg17|chr6 (31793337-31793645) | |
| 667-934, gnl|mm7|chr17 (33168950-33168498) | |
| 667-934, gnl|Mm7|chr17 (33168849-33168567) | |
| 667-934, gnl|monDom2|scaffold_42 (17675775-17675330) | |
| 667-934, gnl|oryCun1|scaffold_198577 (85016-85468) | |
| 667-934, gnl|rheMac2|chr4 (31362635-31363113) | |
| 667-934, gnl|rn3|chr20 (3816434-3816918) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-403, gnl|bosTau2|chr23 (23358071-23358337) | |
| 137-403, gnl|canFam2|chr12 (4190065-4190365) | |
| 137-403, gnl|echTel1|scaffold_298757 (4513-4817) | |
| 137-403, gnl|hg17|chr6 (31783614-31783915) | |
| 137-403, gnl|Hg17|chr6 (31783625-31783891) | |
| 137-403, gnl|loxAfr1|scaffold_98215 (30105-30410) | |
| 137-403, gnl|mm7|chr17 (33180195-33179895) | |
| 137-403, gnl|Mm7|chr17 (33180183-33179917) | |
| 137-403, gnl|monDom2|scaffold_42 (17685364-17685062) | |
| 137-403, gnl|panTro1|chr5 (32184436-32184737) | |
| 137-403, gnl|rheMac2|chr4 (31352113-31352414) | |
| 137-403, gnl|rn3|chr20 (3803591-3803892) | |
| 515-666, gnl|bosTau2|chr23 (23364947-23365095) | |
| 515-666, gnl|canFam2|chr12 (4196612-4196889) | |
| 515-666, gnl|echTel1|scaffold_178550 (627-924) | |
| 515-666, gnl|hg17|chr6 (31791084-31791347) | |
| 515-666, gnl|Hg17|chr6 (31791256-31791380) | |
| 515-666, gnl|loxAfr1|scaffold_154047 (4-306) | |
| 515-666, gnl|mm7|chr17 (33171583-33171291) | |
| 515-666, gnl|Mm7|chr17 (33171404-33171265) | |
| 515-666, gnl|monDom2|scaffold_42 (17676541-17676213) | |
| 515-666, gnl|oryCun1|scaffold_198577 (83330-83625) | |
| 515-666, gnl|panTro1|chr5 (32191919-32192182) | |
| 515-666, gnl|rheMac2|chr4 (31360043-31360306) | |
| 515-666, gnl|rn3|chr20 (3813486-3813777) | |
| 667-934, gnl|bosTau2|chr23 (23366362-23366629) | |
| 667-934, gnl|canFam2|chr12 (4199900-4200366) | |
| 667-934, gnl|dasNov1|scaffold_199547 (4316-3836) | |
| 667-934, gnl|echTel1|scaffold_178550 (2788-3241) | |
| 667-934, gnl|hg17|chr6 (31793240-31793718) | |
| 667-934, gnl|Hg17|chr6 (31793337-31793645) | |
| 667-934, gnl|mm7|chr17 (33168950-33168498) | |
| 667-934, gnl|Mm7|chr17 (33168849-33168567) | |
| 667-934, gnl|monDom2|scaffold_42 (17675775-17675330) | |
| 667-934, gnl|oryCun1|scaffold_198577 (85016-85468) | |
| 667-934, gnl|rheMac2|chr4 (31362635-31363113) | |
| 667-934, gnl|rn3|chr20 (3816434-3816918) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ecc (0.115035) | |
| nbm (0.0993246) |