Ss1.1-LyN1-MLN01A040014.5
|
GCGCTGCCCAGACCGGGGTCCATACGGCGTTGTTCTTGATTCCCGTCGTAACTTAAAGGG
AGACTTTCACAATGTCCGGAGCCCTCGATGTCCTGCAAATGAAAGAGGAGGATGTCCTCA
AGTTCCTTGCAGCAGGAACCCACCTTGGTGGCACCAACCTTGACTTCCAAATGGAACAGT
ACATCTACAAAAGGAAAAGTGATGGCATCTACATCATAAATCTGAAGAGAACCTGGGAGA
AACTTCTGTTGGCGGCTCGTGCCATCGTTGCCATTGAAAACCCAGCCGATGTCAGTGTCA
TATCCTCCAGGAATACTGGCCAGCGAGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCA
CTCCTATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCC
GGGAGCCAAGACTTCTGGTGGTTACTGATCCCAGGGCTGACCACCAGCCTCTCACAGAGG
CCTCTTATGTTAACCTGCCTACCATTGCTCTGTGTAACACAGACTCACCTCTGCGTTATG
TGGACATTGCCATCCCGTGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGA
TGCTCGCCCGGGAAGTTCTGCGCATGCGTGGCACCATCTCCCGGGAACACCCATGGGAAG
TCATGCCTGACCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAGAGCAGGCCG
CAGCTGAGAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCGCCAGCTCCTG
AGTTCACTGCCACTCAACCTGAGGTGGCAGATTGGTCCGAAGGTGTGCAGGTGCCTTCTG
TGCCCATCCAGCAATTCCCTACTGAAGATTGGAGTGCTCAGCCTACCACTGAAGATTGGT
CTGCAGCTCCCACTGCGCAGGCCACTGAATGGGTAGGAACAACCACTGAGTGGTCTTAAG
TTCTTCCATGAACTCTTATTTTCTAAAAATAGAAGTGAGTTGGATGTAAAATAAACAGTT
TCTAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCTGCCCAGACCGGGGTCCATACGGCGTTGTTCTTGATTCCCGTCGTAACTTAAAGGG
AGACTTTCACAATGTCCGGAGCCCTCGATGTCCTGCAAATGAAAGAGGAGGATGTCCTCA
AGTTCCTTGCAGCAGGAACCCACCTTGGTGGCACCAACCTTGACTTCCAAATGGAACAGT
ACATCTACAAAAGGAAAAGTGATGGCATCTACATCATAAATCTGAAGAGAACCTGGGAGA
AACTTCTGTTGGCGGCTCGTGCCATCGTTGCCATTGAAAACCCAGCCGATGTCAGTGTCA
TATCCTCCAGGAATACTGGCCAGCGAGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCA
CTCCTATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCC
GGGAGCCAAGACTTCTGGTGGTTACTGATCCCAGGGCTGACCACCAGCCTCTCACAGAGG
CCTCTTATGTTAACCTGCCTACCATTGCTCTGTGTAACACAGACTCACCTCTGCGTTATG
TGGACATTGCCATCCCGTGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGA
TGCTCGCCCGGGAAGTTCTGCGCATGCGTGGCACCATCTCCCGGGAACACCCATGGGAAG
TCATGCCTGACCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAGAGCAGGCCG
CAGCTGAGAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCGCCAGCTCCTG
AGTTCACTGCCACTCAACCTGAGGTGGCAGATTGGTCCGAAGGTGTGCAGGTGCCTTCTG
TGCCCATCCAGCAATTCCCTACTGAAGATTGGAGTGCTCAGCCTACCACTGAAGATTGGT
CTGCAGCTCCCACTGCGCAGGCCACTGAATGGGTAGGAACAACCACTGAGTGGTCTTAAG
TTCTTCCATGAACTCTTATTTTCTAAAAATAGAAGTGAGTTGGATGTAAAATAAACAGTT
TCTAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
16-1042, gnl|bosTau2|chr5 (12262653-12261709) |
|
16-1042, gnl|Hg17|chr19 (23801748-23802771) |
|
16-1042, gnl|Mm7|chr3 (149973787-149972762) |
| |
|
29-1040, gnl|bosTau2|chr1 (69181535-69182535) |
|
29-1040, gnl|Hg17|chr8 (81633628-81634625) |
|
29-1040, gnl|Mm7|chr11 (32991748-32990747) |
| |
|
129-520, gnl|bosTau2|chr10 (18121029-18121413) |
|
129-520, gnl|Hg17|chr19 (23801861-23802279) |
|
129-520, gnl|Mm7|chr11 (32991651-32991238) |
| |
|
708-929, gnl|bosTau2|chr10 (44457490-44457283) |
|
708-929, gnl|Hg17|chr9 (76243805-76244026) |
|
708-929, gnl|Mm7|chr3 (149973110-149972874) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
16-1042, gnl|bosTau2|chr5 (12262653-12261709) |
|
16-1042, gnl|Hg17|chr19 (23801748-23802771) |
|
16-1042, gnl|Mm7|chr3 (149973787-149972762) |
| |
|
29-1040, gnl|bosTau2|chr1 (69181535-69182535) |
|
29-1040, gnl|Hg17|chr8 (81633628-81634625) |
|
29-1040, gnl|Mm7|chr11 (32991748-32990747) |
| |
|
129-520, gnl|bosTau2|chr10 (18121029-18121413) |
|
129-520, gnl|Hg17|chr19 (23801861-23802279) |
|
129-520, gnl|Mm7|chr11 (32991651-32991238) |
| |
|
708-929, gnl|bosTau2|chr10 (44457490-44457283) |
|
708-929, gnl|Hg17|chr9 (76243805-76244026) |
|
708-929, gnl|Mm7|chr3 (149973110-149972874) |
|
nco (4.69028) |
|
fty (4.39599) |
|
cag (4.38464) |
|
eep (4.28974) |
|
eje (4.24985) |
|
csp (3.86847) |
|
cly (3.7399) |
|
med (3.60381) |
|
eru (3.60144) |
|
ese (2.90955) |
|
cov (2.90736) |
|
ecc (2.87588) |
|
nje (2.82064) |
|
nep (2.75887) |
|
mcp (2.73038) |
|
elu (2.6975) |
|
nca (2.6006) |
|
cga (2.51186) |
|
pty (2.42615) |
|
lnt (2.41924) |
|
nbm (2.28447) |
|
nmm (2.25764) |
|
duo (2.24641) |
|
nlu (2.10849) |
|
ton (2.106) |
|
fli (2.02881) |
|
ebs (1.89282) |
|
ill (1.75593) |
|
col (1.75507) |
|
cli (1.68093) |
|
fce (1.62955) |
|
ece (1.60514) |
|
jca (1.59544) |
|
nms (1.49701) |
|
ute (1.46063) |
|
fbs (1.40277) |
|
mas (1.26183) |
|
amn (1.25313) |
|
cbl (1.03318) |
|
spl (1.00229) |
|
hyp (0.999857) |
|
cje (0.991408) |
|
mgp (0.922722) |
|
eli (0.910885) |
|
eye (0.852515) |
|
hlv (0.835538) |
|
ssp (0.813118) |
|
jej (0.791374) |
|
fcc (0.791139) |
|
thg (0.760746) |
|
clu (0.717875) |
|
cut (0.679694) |
|
bla (0.621736) |
|
pgl (0.592417) |
|
ldo (0.582016) |
|
lyg (0.532411) |
|
ova (0.516529) |
|
tes (0.415628) |
|
hea (0.408998) |
|
ste (0.405625) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
vin (0.332557) |
|
cki (0.330469) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
ctl (0.153069) |
|
lin (0.145603) |
|
csk (0.140746) |
|
che (0.136314) |
|
cty (0.10408) |
|
nco (4.69028) |
|
fty (4.39599) |
|
cag (4.38464) |
|
eep (4.28974) |
|
eje (4.24985) |
|
csp (3.86847) |
|
cly (3.7399) |
|
med (3.60381) |
|
eru (3.60144) |
|
ese (2.90955) |
|
cov (2.90736) |
|
ecc (2.87588) |
|
nje (2.82064) |
|
nep (2.75887) |
|
mcp (2.73038) |
|
elu (2.6975) |
|
nca (2.6006) |
|
cga (2.51186) |
|
pty (2.42615) |
|
lnt (2.41924) |
|
nbm (2.28447) |
|
nmm (2.25764) |
|
duo (2.24641) |
|
nlu (2.10849) |
|
ton (2.106) |
|
fli (2.02881) |
|
ebs (1.89282) |
|
ill (1.75593) |
|
col (1.75507) |
|
cli (1.68093) |
|
fce (1.62955) |
|
ece (1.60514) |
|
jca (1.59544) |
|
nms (1.49701) |
|
ute (1.46063) |
|
fbs (1.40277) |
|
mas (1.26183) |
|
amn (1.25313) |
|
cbl (1.03318) |
|
spl (1.00229) |
|
hyp (0.999857) |
|
cje (0.991408) |
|
mgp (0.922722) |
|
eli (0.910885) |
|
eye (0.852515) |
|
hlv (0.835538) |
|
ssp (0.813118) |
|
jej (0.791374) |
|
fcc (0.791139) |
|
thg (0.760746) |
|
clu (0.717875) |
|
cut (0.679694) |
|
bla (0.621736) |
|
pgl (0.592417) |
|
ldo (0.582016) |
|
lyg (0.532411) |
|
ova (0.516529) |
|
tes (0.415628) |
|
hea (0.408998) |
|
ste (0.405625) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
vin (0.332557) |
|
cki (0.330469) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
ctl (0.153069) |
|
lin (0.145603) |
|
csk (0.140746) |
|
che (0.136314) |
|
cty (0.10408) |
