Ss1.1-LyN1-MLN01A040074.5
|
ATACTTAAATAGACAGCGGTCTCAAGGCAAAAAGAAAAAAAGCTACCAAAGCACGCTGAG
GCTTTAACGTAGGCAGGAGGCTTCTGAGCAGGTGTTGTCTGGTTAGGGATCTCTAAGTTA
GCAAAGAGAAATGAGTAGACTAGCATTTGTGTTGTAAATTTCATGAAAGGGACTCGTTTT
ATTCTTGATGTGTTTGTTGACCTCTGGACAGTGATTACTGTATATACATTCTGTAGTGTG
TCTTTTTTACATATGTCACTGTTAGAGATGAGCGTCTTAATATTATTTACTGTTCTACTC
ACGTATGTATTATTTATACTTTCCTGCAAGATTCACAGCACTTTACTAATATTAGGTAAT
GATTTTTCCTTCTACCTTTCTGTGGCATTTTCCATTTATATCTATTCCATAGGGGTTCTT
TTCCTTATTTTGGAACACTCACCAAGAAAAATGTAAAAGATTGCCCAAATAAATGGGCTT
TGTACTCTTCCTGAGATGTTTTAAGTCAGGTCCGAAGTTCTAAGTCTAGAAATCTCTCTG
AACCTGGGTTGGGGCTACTAGGTGTGCATTGCATTTTATATTTCACATTAATAAGACTCT
TACAAGTTCCTCCTCATGAAGCCAAGTTCTCTCACATGCAGGCACACTTTAAACTTTCTG
TTTTCTGGAGTGGCCTTAATAAAAAGGAAACAGTCTTCTGGTTCATCAAAAGATGTTCTC
ACCTCTGATCTGCCTGTCTCCTAAACTACCAACCTGCAAACTGGCCTTCGCTTTCATAGT
TTCCTCATCTTTGAATATTCTCAGACAGGAGAAAGCAAGCCACATTCCAAGAACTGAAAA
GTCTGAGAATCTGGAAAATGGTGGGAGTGAGGAGATGGGAAAAGGCAGACGCTAATGAGG
GCAGAAAGCTACAAAAATAGTCTCAGTTCTGCTAAAACAGGTAGGCATTATGAACTTGGC
CATTTTCTCAAGTTCAAACATAGGCAGGTTTTCAGCTTGTTCTGTTGTGAGATGTTTCGG
GGAGTCAGGACTCTTGCAGTATGTACTTGAATATGTTAGTCTTTTATAGTCAAAGAGTTC
CCTGGTGGCCGGGCAGTTAAGCATCCGGCATTGTCACGGCAGCAGCTTGGGTTGCTGCCG
TGGCATCGGTTCAATCTCCAGAGAGAGAAAGTTAAACAAAATCATAGTCAAAATGTACTG
AAATATTTCTTGTTCTATAAACATTGACACAAATGATTACTGCCAAAGACTAGGGAGGTT
TGCTCTTAAGAACACTCTCAGAGTTTTCTTATATTTTGTGTTTTTAGATGAGAGAAATGC
TTTTATAGTGTGGCAAGTTTCTCTAGGGCTGTCTCCTGCATCAGCCCCCATCCTACTGAT
GTGCTTGGCTTAGTCAGGTCCCCTTGAAGAGGGCAACATATAGAGAAGGCTAAAGTCCTA
CCTTTGAGGGAAGAGCCACTTGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATACTTAAATAGACAGCGGTCTCAAGGCAAAAAGAAAAAAAGCTACCAAAGCACGCTGAG
GCTTTAACGTAGGCAGGAGGCTTCTGAGCAGGTGTTGTCTGGTTAGGGATCTCTAAGTTA
GCAAAGAGAAATGAGTAGACTAGCATTTGTGTTGTAAATTTCATGAAAGGGACTCGTTTT
ATTCTTGATGTGTTTGTTGACCTCTGGACAGTGATTACTGTATATACATTCTGTAGTGTG
TCTTTTTTACATATGTCACTGTTAGAGATGAGCGTCTTAATATTATTTACTGTTCTACTC
ACGTATGTATTATTTATACTTTCCTGCAAGATTCACAGCACTTTACTAATATTAGGTAAT
GATTTTTCCTTCTACCTTTCTGTGGCATTTTCCATTTATATCTATTCCATAGGGGTTCTT
TTCCTTATTTTGGAACACTCACCAAGAAAAATGTAAAAGATTGCCCAAATAAATGGGCTT
TGTACTCTTCCTGAGATGTTTTAAGTCAGGTCCGAAGTTCTAAGTCTAGAAATCTCTCTG
AACCTGGGTTGGGGCTACTAGGTGTGCATTGCATTTTATATTTCACATTAATAAGACTCT
TACAAGTTCCTCCTCATGAAGCCAAGTTCTCTCACATGCAGGCACACTTTAAACTTTCTG
TTTTCTGGAGTGGCCTTAATAAAAAGGAAACAGTCTTCTGGTTCATCAAAAGATGTTCTC
ACCTCTGATCTGCCTGTCTCCTAAACTACCAACCTGCAAACTGGCCTTCGCTTTCATAGT
TTCCTCATCTTTGAATATTCTCAGACAGGAGAAAGCAAGCCACATTCCAAGAACTGAAAA
GTCTGAGAATCTGGAAAATGGTGGGAGTGAGGAGATGGGAAAAGGCAGACGCTAATGAGG
GCAGAAAGCTACAAAAATAGTCTCAGTTCTGCTAAAACAGGTAGGCATTATGAACTTGGC
CATTTTCTCAAGTTCAAACATAGGCAGGTTTTCAGCTTGTTCTGTTGTGAGATGTTTCGG
GGAGTCAGGACTCTTGCAGTATGTACTTGAATATGTTAGTCTTTTATAGTCAAAGAGTTC
CCTGGTGGCCGGGCAGTTAAGCATCCGGCATTGTCACGGCAGCAGCTTGGGTTGCTGCCG
TGGCATCGGTTCAATCTCCAGAGAGAGAAAGTTAAACAAAATCATAGTCAAAATGTACTG
AAATATTTCTTGTTCTATAAACATTGACACAAATGATTACTGCCAAAGACTAGGGAGGTT
TGCTCTTAAGAACACTCTCAGAGTTTTCTTATATTTTGTGTTTTTAGATGAGAGAAATGC
TTTTATAGTGTGGCAAGTTTCTCTAGGGCTGTCTCCTGCATCAGCCCCCATCCTACTGAT
GTGCTTGGCTTAGTCAGGTCCCCTTGAAGAGGGCAACATATAGAGAAGGCTAAAGTCCTA
CCTTTGAGGGAAGAGCCACTTGTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
35-1057, gnl|bosTau2|chr27 (24142204-24143242) |
|
35-1057, gnl|Hg17|chr8 (43000339-43001599) |
| |
|
1179-1461, gnl|bosTau2|chr27 (24143250-24143530) |
|
1179-1461, gnl|canFam2|chr16 (25742199-25741975) |
|
1179-1461, gnl|dasNov1|scaffold_48207 (4634-4402) |
|
1179-1461, gnl|echTel1|scaffold_190017 (3311-3125) |
|
1179-1461, gnl|hg17|chr8 (43001605-43001822) |
|
1179-1461, gnl|Hg17|chr8 (43001607-43001877) |
|
1179-1461, gnl|loxAfr1|scaffold_11659 (53642-53837) |
|
1179-1461, gnl|mm7|chr8 (24780735-24780378) |
|
1179-1461, gnl|Mm7|chr8 (24780731-24780322) |
|
1179-1461, gnl|oryCun1|scaffold_207684 (15399-15204) |
|
1179-1461, gnl|panTro1|chr7 (44485919-44486141) |
|
1179-1461, gnl|rheMac2|chr8 (43635017-43635239) |
|
1179-1461, gnl|rn3|chr16 (70431322-70431681) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
35-1057, gnl|bosTau2|chr27 (24142204-24143242) |
|
35-1057, gnl|Hg17|chr8 (43000339-43001599) |
| |
|
1179-1461, gnl|bosTau2|chr27 (24143250-24143530) |
|
1179-1461, gnl|canFam2|chr16 (25742199-25741975) |
|
1179-1461, gnl|dasNov1|scaffold_48207 (4634-4402) |
|
1179-1461, gnl|echTel1|scaffold_190017 (3311-3125) |
|
1179-1461, gnl|hg17|chr8 (43001605-43001822) |
|
1179-1461, gnl|Hg17|chr8 (43001607-43001877) |
|
1179-1461, gnl|loxAfr1|scaffold_11659 (53642-53837) |
|
1179-1461, gnl|mm7|chr8 (24780735-24780378) |
|
1179-1461, gnl|Mm7|chr8 (24780731-24780322) |
|
1179-1461, gnl|oryCun1|scaffold_207684 (15399-15204) |
|
1179-1461, gnl|panTro1|chr7 (44485919-44486141) |
|
1179-1461, gnl|rheMac2|chr8 (43635017-43635239) |
|
1179-1461, gnl|rn3|chr16 (70431322-70431681) |
|
pro (0.512033) |
|
cje (0.330469) |
|
ton (0.1755) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
pro (0.512033) |
|
cje (0.330469) |
|
ton (0.1755) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
