Ss1.1-LyN1-MLN01A040100.5
|
ACACTATACCCACAACACAGTCCGAGGGTGCTCTTATTTTTACAGTTACCCTGCAGTTTG
TGAATTTTTACAGAACAATAATTTGTTATCAATAATCAGAGCCCATGAAGCCCAAGATGC
TGGGTATCGAATGTACAGGAAGAGCCAAACGACGGGCTTTCCATCACTCATAACAATTTT
CTCTGCCCCCAATTACCTAGATGTCTATAACAATAAAGCTGCTGTATTAAAATATGAAAA
CAATGTCATGAATATTAGGCAGTTTAACTGTTCTCCACACCCATACTGGCTTCCAAACTT
TATGGATGTTTTCACATGGTCTTTGCCTTTTGTTGGGGAAAAAGTCACAGAGATGCTGGT
TAATATTCTCAACATATGCTCCGATGATGAATTGATTTCTGATGATGAAATTGAAGGAGG
CACTACAGTTCGAAAGGAGATCATCAAGAATAAAATCAGAGCCATTGGAAAGATGGCACG
GGTCTTTTCAATTCTTCGGGAAGAGAGTGAGAGTGTGCTGACTCTCAAGGGCCTGACTCC
TACTGGTACACTCCCTTTGGGTGTCCTTTCAGGAGGAAAGCAGACCATTGAGACAGCCAC
AGTAGAAGCGGTAGAGGCCCGGGAAGCCATCAGAGGGTTTTCGCTTCAGCACAGGATCCG
CAGTTTTGAAGAAGCCCGAGGTCTGGACCGAATTAATGAGCGGATGCCACCCCGCAAAGA
TAGCCAATACTTTGATGGGCCAGTGAAATTGGTAACCCCTGTCCAAGCAAACGCCGTGCA
CAGGAACGACAGGGGGAGAAGAGCCAGTAATGACTCGGAGCCCAGCAGTGGTACAGGAGG
ATCCAAAACTTAAGAACACATTTTACTTATTTATTATTGGGAAACAAAACAAAAACAACT
TAAACCTGGAGGTGCATTTATCCTGTAAGAAAGGTGACCGTTTTGTAAATTCTTTTAATT
TATGTTGAATATATATAAAAAGTGCATCTGTTTTGTTTTTCCCTTTTCCCCCTGATTTTT
AGGAACTGATCCGATTGCCTGATACATATGTGAAGTCTTGTGCTATAAAGGGGACCGTCC
CCTAATAAAAGGGCCTTGGAAACCTCCACCCTGGGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACACTATACCCACAACACAGTCCGAGGGTGCTCTTATTTTTACAGTTACCCTGCAGTTTG
TGAATTTTTACAGAACAATAATTTGTTATCAATAATCAGAGCCCATGAAGCCCAAGATGC
TGGGTATCGAATGTACAGGAAGAGCCAAACGACGGGCTTTCCATCACTCATAACAATTTT
CTCTGCCCCCAATTACCTAGATGTCTATAACAATAAAGCTGCTGTATTAAAATATGAAAA
CAATGTCATGAATATTAGGCAGTTTAACTGTTCTCCACACCCATACTGGCTTCCAAACTT
TATGGATGTTTTCACATGGTCTTTGCCTTTTGTTGGGGAAAAAGTCACAGAGATGCTGGT
TAATATTCTCAACATATGCTCCGATGATGAATTGATTTCTGATGATGAAATTGAAGGAGG
CACTACAGTTCGAAAGGAGATCATCAAGAATAAAATCAGAGCCATTGGAAAGATGGCACG
GGTCTTTTCAATTCTTCGGGAAGAGAGTGAGAGTGTGCTGACTCTCAAGGGCCTGACTCC
TACTGGTACACTCCCTTTGGGTGTCCTTTCAGGAGGAAAGCAGACCATTGAGACAGCCAC
AGTAGAAGCGGTAGAGGCCCGGGAAGCCATCAGAGGGTTTTCGCTTCAGCACAGGATCCG
CAGTTTTGAAGAAGCCCGAGGTCTGGACCGAATTAATGAGCGGATGCCACCCCGCAAAGA
TAGCCAATACTTTGATGGGCCAGTGAAATTGGTAACCCCTGTCCAAGCAAACGCCGTGCA
CAGGAACGACAGGGGGAGAAGAGCCAGTAATGACTCGGAGCCCAGCAGTGGTACAGGAGG
ATCCAAAACTTAAGAACACATTTTACTTATTTATTATTGGGAAACAAAACAAAAACAACT
TAAACCTGGAGGTGCATTTATCCTGTAAGAAAGGTGACCGTTTTGTAAATTCTTTTAATT
TATGTTGAATATATATAAAAAGTGCATCTGTTTTGTTTTTCCCTTTTCCCCCTGATTTTT
AGGAACTGATCCGATTGCCTGATACATATGTGAAGTCTTGTGCTATAAAGGGGACCGTCC
CCTAATAAAAGGGCCTTGGAAACCTCCACCCTGGGT
|
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gi|61833929|ref|XP_612961.1| |
Protein identifier
|
gi|61833929|ref|XP_612961.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
217-344, gnl|bosTau2|chr15 (41513422-41513295) |
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217-344, gnl|canFam2|chr32 (25648452-25648607) |
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217-344, gnl|danRer3|chr5 (21729613-21729454) |
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217-344, gnl|dasNov1|scaffold_415 (6996-7151) |
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217-344, gnl|echTel1|scaffold_210752 (5363-5210) |
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217-344, gnl|fr1|chrUn (215891221-215891375) |
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217-344, gnl|galGal2|chr4 (60807157-60807316) |
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217-344, gnl|hg17|chr4 (102341565-102341719) |
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217-344, gnl|Hg17|chr4 (102341694-102341567) |
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217-344, gnl|loxAfr1|scaffold_10694 (28490-28643) |
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217-344, gnl|mm7|chr3 (136697491-136697337) |
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217-344, gnl|Mm7|chr3 (136697360-136697487) |
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217-344, gnl|monDom2|scaffold_37 (11317630-11317473) |
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217-344, gnl|oryCun1|scaffold_213494 (179850-179696) |
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217-344, gnl|panTro1|chr3 (118725596-118725750) |
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217-344, gnl|rheMac2|chr5 (94026395-94026549) |
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217-344, gnl|rn3|chr2 (234360080-234359926) |
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217-344, gnl|tetNig1|chrUn_random (43854561-43854432) |
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217-344, gnl|xenTro1|scaffold_326 (963395-963244) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
217-344, gnl|bosTau2|chr15 (41513422-41513295) |
|
217-344, gnl|canFam2|chr32 (25648452-25648607) |
|
217-344, gnl|danRer3|chr5 (21729613-21729454) |
|
217-344, gnl|dasNov1|scaffold_415 (6996-7151) |
|
217-344, gnl|echTel1|scaffold_210752 (5363-5210) |
|
217-344, gnl|fr1|chrUn (215891221-215891375) |
|
217-344, gnl|galGal2|chr4 (60807157-60807316) |
|
217-344, gnl|hg17|chr4 (102341565-102341719) |
|
217-344, gnl|Hg17|chr4 (102341694-102341567) |
|
217-344, gnl|loxAfr1|scaffold_10694 (28490-28643) |
|
217-344, gnl|mm7|chr3 (136697491-136697337) |
|
217-344, gnl|Mm7|chr3 (136697360-136697487) |
|
217-344, gnl|monDom2|scaffold_37 (11317630-11317473) |
|
217-344, gnl|oryCun1|scaffold_213494 (179850-179696) |
|
217-344, gnl|panTro1|chr3 (118725596-118725750) |
|
217-344, gnl|rheMac2|chr5 (94026395-94026549) |
|
217-344, gnl|rn3|chr2 (234360080-234359926) |
|
217-344, gnl|tetNig1|chrUn_random (43854561-43854432) |
|
217-344, gnl|xenTro1|scaffold_326 (963395-963244) |
|
hyp (0.285673) |
|
ecc (0.23007) |
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ldo (0.194005) |
|
spl (0.143184) |
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csk (0.140746) |
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hlv (0.139256) |
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ste (0.135208) |
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sug (0.127291) |
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hyp (0.285673) |
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ecc (0.23007) |
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ldo (0.194005) |
|
spl (0.143184) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
sug (0.127291) |
