Non-Coding RNA Search

Ss1.1-LyN1-MLN01A050011.5

Sequence:


               
               GGTGGCACCTAAGTGAGGCGGCGGGGCAGGGGCTGGCAGCTCCGACGGCAACCATGGCGT
ATACCGGCCTCACGGTGCCTCTCATCGTGATGAGCGTGTTCTGGGGCTTCGTCGGCTTCC
TGGTTCCCTGGTTCATCCCTAAGGGTCCCAACCGGGGAGTCATCATCACCATGTTGGTGA
CCTGTTCGGTTTGCTGCTATCTCTTTTGGCTGATTGCAATTCTGGCCCAACTCAATCCTC
TGTTTGGACCACAGTTGAAAAATGAAACCATCTGGTACCTCAAGTATCATTGGCCTTGAG
GAAGAAGACCTGCTCGCCAGTGTTCAGTCATTGAGGTCACGAAGAGAGTTCCTCTAGATG
CAAAATCACCTCCATACCCAGACCTCCTTCCTTGACCTGCCTCTGCTGGCCGTCAGATGC
CTTAAACGTTCACGCCACAGTTGAATATCTTATTCCTCAACGCAGTATTTTTTTCCTGTC
GCCTTTCTTACACTTTGATGAATGATGTGCCTCTTTTACTTAAACGCTCTCCGTAAAAGG
TTCATGTGCTCTTCTGAGATAGACAGTGCTCTTTCTTCGGGGAAATAACATTACTCCCTC
CGTGGAACCTGTGGATTGGAAGATGGCTCCTGCCTGCTCACAGCGTGGGAATCCGCGAAG
CGTTTAAACACTGTAACAGGACAGTGAGACCCCAGTGGGGCTGTCAGTAGGAGATCATAT
TCAGAGGGAGAATCTGTCTCGCCAGAACCATACCAAAGTACATTTTTAGGATGAATTTCT
TATTTCTGCCGTCTCTGGGAATAAATTATTTTTCTGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCACCTAAGTGAGGCGGCGGGGCAGGGGCTGGCAGCTCCGACGGCAACCATGGCGT
ATACCGGCCTCACGGTGCCTCTCATCGTGATGAGCGTGTTCTGGGGCTTCGTCGGCTTCC
TGGTTCCCTGGTTCATCCCTAAGGGTCCCAACCGGGGAGTCATCATCACCATGTTGGTGA
CCTGTTCGGTTTGCTGCTATCTCTTTTGGCTGATTGCAATTCTGGCCCAACTCAATCCTC
TGTTTGGACCACAGTTGAAAAATGAAACCATCTGGTACCTCAAGTATCATTGGCCTTGAG
GAAGAAGACCTGCTCGCCAGTGTTCAGTCATTGAGGTCACGAAGAGAGTTCCTCTAGATG
CAAAATCACCTCCATACCCAGACCTCCTTCCTTGACCTGCCTCTGCTGGCCGTCAGATGC
CTTAAACGTTCACGCCACAGTTGAATATCTTATTCCTCAACGCAGTATTTTTTTCCTGTC
GCCTTTCTTACACTTTGATGAATGATGTGCCTCTTTTACTTAAACGCTCTCCGTAAAAGG
TTCATGTGCTCTTCTGAGATAGACAGTGCTCTTTCTTCGGGGAAATAACATTACTCCCTC
CGTGGAACCTGTGGATTGGAAGATGGCTCCTGCCTGCTCACAGCGTGGGAATCCGCGAAG
CGTTTAAACACTGTAACAGGACAGTGAGACCCCAGTGGGGCTGTCAGTAGGAGATCATAT
TCAGAGGGAGAATCTGTCTCGCCAGAACCATACCAAAGTACATTTTTAGGATGAATTTCT
TATTTCTGCCGTCTCTGGGAATAAATTATTTTTCTGCAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55728742|emb|CAH91110.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55728742|emb|CAH91110.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               87-206, + strand, RNAz p=0.514211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-206, + strand, RNAz p=0.514211

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               48-828, gnl|bosTau2|chr16 (49171974-49172747)
               

               
               48-828, gnl|Hg17|chr3 (41876088-41875334)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-828, gnl|bosTau2|chr16 (49171974-49172747)
               

               
               48-828, gnl|Hg17|chr3 (41876088-41875334)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               sto (1.25877)
               

               
               cut (0.679694)
               

               
               nje (0.66368)
               

               
               sme (0.610874)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               csp (0.483559)
               

               
               lnt (0.426925)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               pgl (0.35545)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (1.25877)
               

               
               cut (0.679694)
               

               
               nje (0.66368)
               

               
               sme (0.610874)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               csp (0.483559)
               

               
               lnt (0.426925)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               pgl (0.35545)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	48-828, gnl\|bosTau2\|chr16 (49171974-49172747)
	48-828, gnl\|Hg17\|chr3 (41876088-41875334)

	sto (1.25877)
	cut (0.679694)
	nje (0.66368)
	sme (0.610874)
	cov (0.528611)
	ill (0.526778)
	sin (0.524843)
	duo (0.518403)
	mcp (0.511945)
	csp (0.483559)
	lnt (0.426925)
	tes (0.415628)
	lyg (0.399308)
	nlu (0.383362)
	bla (0.373042)
	pgl (0.35545)
	vin (0.332557)
	cje (0.330469)
	cki (0.330469)
	bfe (0.299715)
	fat (0.294855)
	csk (0.281492)
	che (0.272628)
	pla (0.267344)
	nmm (0.265604)
	kid (0.259471)
	ova (0.258264)
	tra (0.246184)
	cbe (0.239234)
	med (0.232504)
	mgp (0.230681)
	cty (0.20816)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	nco (0.161734)
	cli (0.152812)
	lun (0.150489)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)