Ss1.1-LyN1-MLN01A050040.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCAGTGGCTAGATTGAAAGGCATTATTTGAGTAGTTTACTTCTCTTTTAATTCATTC TTTCTTACTTTTTTTTTTTAAAGCATCAAATTGTTGAGCCCGAGGACACCCACTTGAAAA AGGTACAAGGTACTTCCGACCAGGCAGCCCCAGCGCGCAGCCAGGGAGTGTTCCGGAAGC GGGTCGCCGCGCTTGGCCGCCCGAGGCGGGGAATCATGGCAACGGATGAAAAGGAAAAAA AACAAGATCTTAAGGAGGAATGGCCAGCTGAAGAAGTTATGAAAGATGAACAAAACCAGA AATTAATTGATGAACTTGAAAAGGAAAATATTCAGTTAACGGAAGAGCTCCAAAAACTTG AAGCTGAGTTACAAGAGACCACCACAAACTCCCAGATTCACGAGGATATTCCTGAAACAA AGATAAAGTTCACATCCTTAGAGAATCCTGAGAGTGACAGACAGTTTTCAAATATCTCCT ATTCATGTCAAGTGAGCTCAAAAGTCCCTTATGAGCTACAAAAAGGACAAGCACTTATCA CCTTTGAAAAAGAAGAAGTTGCCCAAAACGTGATCAGAATGGAGAGCCATCACGTGCAGA TGCAGGGTGTCAAGGTGAAGGTTATGGCCAAGCCGGTTTCATTAAAGTCTGGAGTCAGAT TCCAGGTTCACGTAGAAGTGTCTAAAATGAAGATCAACGTTACTGAAATTCCTGATGAAC TGCCTGAAAGTCAGATGAGAGATAAGCTAGAACTGAGTTTTTCTAAGTCCCGCTACGGAG GTGGAGAAGTGGAGAGCGTGGAGTATGACAGGCAGGCCCGGAGCGCTGTCGTCACATTTG TGGAAAGTGGAGTTGCTGACAGAATTTTGAAAATGAAAGACTATGCTCTTTATATAAATG AAAACTGCCATAGAGTTATGGTGGCTCCATTCATGGAAACACATTTGGAAAAATTTCAGG TATTTTCAGGAGTATCTAAGAAGACGGTGCTTCTGAGTGGACTGGAAGACCTTCAGATAA CAGATGAAGAAACTGTGGAGGATTTCATTAGCATTCACTTTCAGCGGGAGAAGAATGGAG GTGGAGAAGTCGAGGTGGTCAGATGTTCCCTCGGGCAACCTCACATAGTATACTTTGAAG AATAGAATCTTGGAACCTTATGAAAATTAGAGCTTCTAAACCCAAATAACTGTCAGTGCT TGACAAAAATGAATATTTTTTTCCTTAAAGGAATGAGAAATTTAATTCTTTAGTGTTCCA TTATTCTTATATACAAAATACACTTCTATACAAAACACATTTCTATGCAAAATGTATTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCAGTGGCTAGATTGAAAGGCATTATTTGAGTAGTTTACTTCTCTTTTAATTCATTC TTTCTTACTTTTTTTTTTTAAAGCATCAAATTGTTGAGCCCGAGGACACCCACTTGAAAA AGGTACAAGGTACTTCCGACCAGGCAGCCCCAGCGCGCAGCCAGGGAGTGTTCCGGAAGC GGGTCGCCGCGCTTGGCCGCCCGAGGCGGGGAATCATGGCAACGGATGAAAAGGAAAAAA AACAAGATCTTAAGGAGGAATGGCCAGCTGAAGAAGTTATGAAAGATGAACAAAACCAGA AATTAATTGATGAACTTGAAAAGGAAAATATTCAGTTAACGGAAGAGCTCCAAAAACTTG AAGCTGAGTTACAAGAGACCACCACAAACTCCCAGATTCACGAGGATATTCCTGAAACAA AGATAAAGTTCACATCCTTAGAGAATCCTGAGAGTGACAGACAGTTTTCAAATATCTCCT ATTCATGTCAAGTGAGCTCAAAAGTCCCTTATGAGCTACAAAAAGGACAAGCACTTATCA CCTTTGAAAAAGAAGAAGTTGCCCAAAACGTGATCAGAATGGAGAGCCATCACGTGCAGA TGCAGGGTGTCAAGGTGAAGGTTATGGCCAAGCCGGTTTCATTAAAGTCTGGAGTCAGAT TCCAGGTTCACGTAGAAGTGTCTAAAATGAAGATCAACGTTACTGAAATTCCTGATGAAC TGCCTGAAAGTCAGATGAGAGATAAGCTAGAACTGAGTTTTTCTAAGTCCCGCTACGGAG GTGGAGAAGTGGAGAGCGTGGAGTATGACAGGCAGGCCCGGAGCGCTGTCGTCACATTTG TGGAAAGTGGAGTTGCTGACAGAATTTTGAAAATGAAAGACTATGCTCTTTATATAAATG AAAACTGCCATAGAGTTATGGTGGCTCCATTCATGGAAACACATTTGGAAAAATTTCAGG TATTTTCAGGAGTATCTAAGAAGACGGTGCTTCTGAGTGGACTGGAAGACCTTCAGATAA CAGATGAAGAAACTGTGGAGGATTTCATTAGCATTCACTTTCAGCGGGAGAAGAATGGAG GTGGAGAAGTCGAGGTGGTCAGATGTTCCCTCGGGCAACCTCACATAGTATACTTTGAAG AATAGAATCTTGGAACCTTATGAAAATTAGAGCTTCTAAACCCAAATAACTGTCAGTGCT TGACAAAAATGAATATTTTTTTCCTTAAAGGAATGAGAAATTTAATTCTTTAGTGTTCCA TTATTCTTATATACAAAATACACTTCTATACAAAACACATTTCTATGCAAAATGTATTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 394-558, gnl|bosTau2|chr2 (9036702-9036538) | |
| 394-558, gnl|Hg17|chr2 (151961014-151960850) | |
| 394-558, gnl|Mm7|chr2 (51963401-51963237) | |
| 662-852, gnl|bosTau2|chr2 (9032891-9032701) | |
| 662-852, gnl|canFam2|chr19 (55567066-55567196) | |
| 662-852, gnl|dasNov1|scaffold_99619 (6131-6261) | |
| 662-852, gnl|echTel1|scaffold_277166 (645-767) | |
| 662-852, gnl|hg17|chr2 (151957503-151957633) | |
| 662-852, gnl|Hg17|chr2 (151957696-151957506) | |
| 662-852, gnl|loxAfr1|scaffold_13740 (9119-8990) | |
| 662-852, gnl|mm7|chr2 (51959750-51959880) | |
| 662-852, gnl|Mm7|chr2 (51959943-51959753) | |
| 662-852, gnl|monDom2|scaffold_2 (42313323-42313453) | |
| 662-852, gnl|oryCun1|scaffold_171391 (4574-4704) | |
| 662-852, gnl|panTro1|chr13_random (14804674-14804544) | |
| 662-852, gnl|rheMac2|chr12 (14905840-14905970) | |
| 662-852, gnl|rn3|chr3 (32875628-32875758) | |
| 662-852, gnl|tetNig1|chr2 (7061975-7061845) | |
| 958-1287, gnl|bosTau2|chr2 (9029262-9028932) | |
| 958-1287, gnl|Hg17|chr2 (151952899-151952576) | |
| 958-1287, gnl|Mm7|chr2 (51956089-51955774) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 394-558, gnl|bosTau2|chr2 (9036702-9036538) | |
| 394-558, gnl|Hg17|chr2 (151961014-151960850) | |
| 394-558, gnl|Mm7|chr2 (51963401-51963237) | |
| 662-852, gnl|bosTau2|chr2 (9032891-9032701) | |
| 662-852, gnl|canFam2|chr19 (55567066-55567196) | |
| 662-852, gnl|dasNov1|scaffold_99619 (6131-6261) | |
| 662-852, gnl|echTel1|scaffold_277166 (645-767) | |
| 662-852, gnl|hg17|chr2 (151957503-151957633) | |
| 662-852, gnl|Hg17|chr2 (151957696-151957506) | |
| 662-852, gnl|loxAfr1|scaffold_13740 (9119-8990) | |
| 662-852, gnl|mm7|chr2 (51959750-51959880) | |
| 662-852, gnl|Mm7|chr2 (51959943-51959753) | |
| 662-852, gnl|monDom2|scaffold_2 (42313323-42313453) | |
| 662-852, gnl|oryCun1|scaffold_171391 (4574-4704) | |
| 662-852, gnl|panTro1|chr13_random (14804674-14804544) | |
| 662-852, gnl|rheMac2|chr12 (14905840-14905970) | |
| 662-852, gnl|rn3|chr3 (32875628-32875758) | |
| 662-852, gnl|tetNig1|chr2 (7061975-7061845) | |
| 958-1287, gnl|bosTau2|chr2 (9029262-9028932) | |
| 958-1287, gnl|Hg17|chr2 (151952899-151952576) | |
| 958-1287, gnl|Mm7|chr2 (51956089-51955774) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cmu (0.745573) | |
| sin (0.69979) | |
| cut (0.509771) | |
| cbl (0.45919) | |
| csk (0.422238) | |
| thg (0.380373) | |
| clu (0.358938) | |
| cty (0.31224) | |
| sme (0.305437) | |
| cte (0.29274) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.745573) | |
| sin (0.69979) | |
| cut (0.509771) | |
| cbl (0.45919) | |
| csk (0.422238) | |
| thg (0.380373) | |
| clu (0.358938) | |
| cty (0.31224) | |
| sme (0.305437) | |
| cte (0.29274) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| spc (0.113366) |