Ss1.1-LyN1-MLN01A050079.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTTGGGGAATGAAACCCATGATCTTCAGTTCCTCAGAGAAGTGAAAGCAGCAACAGGG AATCCAGTAATTCCTGTTATCTGCAGGCTTCACAAGTCAGAGCTCACTCTCCAGATACTG CTGTCCTCTCTCCAAACCCTGAAGCCAGAGGAGCCCAGGATGTCTCAGCTGCTGGTCTCC CTGATGCTTCTCCTCCTCTCCACCCACAGTTCCCTGGCCCTGAGGATCTGCTCCTTCAAT GTGAGGTCCTTTGGGGAATCCAAGAAGGCAAACTGTAATGCCATGGATGTCATCGTGAAG GTCATCAAACGCTGCGACATCATACTCCTGATGGAAATCAAGGACAGCAACAACATGATC TGTCCCACGCTGATGGAGAAGCTGAATGGAAATTCAAGAAGAAGCGTAACATATAACTAT GTGATTAGTTCTCGGCTTGGAAGAAACACATATAAAGAACAGTATGCCTTTCTCTACAAG GAAAAGCTAGTGTCTGTGAAGAAAAGCTATCTCTACCATGACTATCAGTCTGGAGACGCA GATGTATTTTCCAGGGAACCCTTTGTGGTCTGGTTCCAGTCACCCTACACTGCGGTTAAG GACTTCGTGATCATCCCCCTGCACACCACCCCTGAGACATCCGTTAAAGAGATTGATGAG CTGGTTGATGTCTATCTGGATGTGAAACGCCGCTGGGAGGCCGAGAATTTCATTTTCATG GGTGACTTCAATGCTGGCTGCAGCTATGTCCCCAAGAAGGCCTGGAAGAACATCCGCCTA AGGACTGACCCCATGTTCATTTGGCTGATCAAGGACCAAGAAGACACCACAGTCAAGAAG AGCACAAACTGTGCCTATGACAGGATTGTGCTTCGAGGCCAAGAGATTGTCAGCTCTGTT GTTCCTGGCTCAAACAGCATCTTTGACTTCCAGAAAGCTTACAGGTTGACTGAAGAGAAG GCCCTGGATGTCAGCGACCACTTTCCAGTTGAATTTAAACTTCAGTCTTCAAGGGCCTTC ACCAACAGCAAAAAATCCATCTCTTCAAAGAAGAAAAAAAAGGCCAGTCGTACCTAAATA CAAGGCACCATTTTATTAACCATTTCTTGCCTCTCAATAAAGCAAGAACTGTTCCTTGTG CTTGGGAAACAAGACTGGTCCAACTGCTTTCACAATTTCACCTTGAATCTAATCCACCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTTGGGGAATGAAACCCATGATCTTCAGTTCCTCAGAGAAGTGAAAGCAGCAACAGGG AATCCAGTAATTCCTGTTATCTGCAGGCTTCACAAGTCAGAGCTCACTCTCCAGATACTG CTGTCCTCTCTCCAAACCCTGAAGCCAGAGGAGCCCAGGATGTCTCAGCTGCTGGTCTCC CTGATGCTTCTCCTCCTCTCCACCCACAGTTCCCTGGCCCTGAGGATCTGCTCCTTCAAT GTGAGGTCCTTTGGGGAATCCAAGAAGGCAAACTGTAATGCCATGGATGTCATCGTGAAG GTCATCAAACGCTGCGACATCATACTCCTGATGGAAATCAAGGACAGCAACAACATGATC TGTCCCACGCTGATGGAGAAGCTGAATGGAAATTCAAGAAGAAGCGTAACATATAACTAT GTGATTAGTTCTCGGCTTGGAAGAAACACATATAAAGAACAGTATGCCTTTCTCTACAAG GAAAAGCTAGTGTCTGTGAAGAAAAGCTATCTCTACCATGACTATCAGTCTGGAGACGCA GATGTATTTTCCAGGGAACCCTTTGTGGTCTGGTTCCAGTCACCCTACACTGCGGTTAAG GACTTCGTGATCATCCCCCTGCACACCACCCCTGAGACATCCGTTAAAGAGATTGATGAG CTGGTTGATGTCTATCTGGATGTGAAACGCCGCTGGGAGGCCGAGAATTTCATTTTCATG GGTGACTTCAATGCTGGCTGCAGCTATGTCCCCAAGAAGGCCTGGAAGAACATCCGCCTA AGGACTGACCCCATGTTCATTTGGCTGATCAAGGACCAAGAAGACACCACAGTCAAGAAG AGCACAAACTGTGCCTATGACAGGATTGTGCTTCGAGGCCAAGAGATTGTCAGCTCTGTT GTTCCTGGCTCAAACAGCATCTTTGACTTCCAGAAAGCTTACAGGTTGACTGAAGAGAAG GCCCTGGATGTCAGCGACCACTTTCCAGTTGAATTTAAACTTCAGTCTTCAAGGGCCTTC ACCAACAGCAAAAAATCCATCTCTTCAAAGAAGAAAAAAAAGGCCAGTCGTACCTAAATA CAAGGCACCATTTTATTAACCATTTCTTGCCTCTCAATAAAGCAAGAACTGTTCCTTGTG CTTGGGAAACAAGACTGGTCCAACTGCTTTCACAATTTCACCTTGAATCTAATCCACCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 548-637, - strand, RNAz p=0.712009 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 548-637, - strand, RNAz p=0.712009 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-302, gnl|bosTau2|chr22 (31888646-31888327) | |
| 2-302, gnl|Hg17|chr3 (58171855-58171531) | |
| 2-302, gnl|Mm7|chr14 (5804205-5803901) | |
| 469-637, gnl|bosTau2|chr22 (31880098-31879932) | |
| 469-637, gnl|Hg17|chr3 (58165656-58165494) | |
| 469-637, gnl|Mm7|chr14 (5793252-5792726) | |
| 704-864, gnl|bosTau2|chr22 (31874552-31874392) | |
| 704-864, gnl|canFam2|chr20 (35373285-35373102) | |
| 704-864, gnl|danRer3|chr23 (26166585-26166395) | |
| 704-864, gnl|dasNov1|scaffold_108439 (2815-2632) | |
| 704-864, gnl|echTel1|scaffold_275785 (10438-10268) | |
| 704-864, gnl|fr1|chrUn (265123971-265123785) | |
| 704-864, gnl|galGal2|chr12 (8991524-8991712) | |
| 704-864, gnl|hg17|chr3 (58158586-58158769) | |
| 704-864, gnl|Hg17|chr3 (58158747-58158587) | |
| 704-864, gnl|loxAfr1|scaffold_189487 (138-321) | |
| 704-864, gnl|mm7|chr14 (5784042-5784225) | |
| 704-864, gnl|Mm7|chr14 (5784203-5784043) | |
| 704-864, gnl|monDom2|scaffold_5 (3076737-3076907) | |
| 704-864, gnl|oryCun1|scaffold_207772 (292300-292483) | |
| 704-864, gnl|panTro1|chr2 (59910784-59910967) | |
| 704-864, gnl|rheMac2|chr2 (78193783-78193600) | |
| 704-864, gnl|rn3|chr15 (18928086-18927902) | |
| 704-864, gnl|tetNig1|chr9 (2855904-2856079) | |
| 704-864, gnl|xenTro1|scaffold_80 (2238937-2239110) | |
| 959-1200, gnl|bosTau2|chr22 (31869126-31868871) | |
| 959-1200, gnl|Hg17|chr3 (58153572-58153318) | |
| 959-1200, gnl|Mm7|chr14 (5777950-5777691) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-302, gnl|bosTau2|chr22 (31888646-31888327) | |
| 2-302, gnl|Hg17|chr3 (58171855-58171531) | |
| 2-302, gnl|Mm7|chr14 (5804205-5803901) | |
| 469-637, gnl|bosTau2|chr22 (31880098-31879932) | |
| 469-637, gnl|Hg17|chr3 (58165656-58165494) | |
| 469-637, gnl|Mm7|chr14 (5793252-5792726) | |
| 704-864, gnl|bosTau2|chr22 (31874552-31874392) | |
| 704-864, gnl|canFam2|chr20 (35373285-35373102) | |
| 704-864, gnl|danRer3|chr23 (26166585-26166395) | |
| 704-864, gnl|dasNov1|scaffold_108439 (2815-2632) | |
| 704-864, gnl|echTel1|scaffold_275785 (10438-10268) | |
| 704-864, gnl|fr1|chrUn (265123971-265123785) | |
| 704-864, gnl|galGal2|chr12 (8991524-8991712) | |
| 704-864, gnl|hg17|chr3 (58158586-58158769) | |
| 704-864, gnl|Hg17|chr3 (58158747-58158587) | |
| 704-864, gnl|loxAfr1|scaffold_189487 (138-321) | |
| 704-864, gnl|mm7|chr14 (5784042-5784225) | |
| 704-864, gnl|Mm7|chr14 (5784203-5784043) | |
| 704-864, gnl|monDom2|scaffold_5 (3076737-3076907) | |
| 704-864, gnl|oryCun1|scaffold_207772 (292300-292483) | |
| 704-864, gnl|panTro1|chr2 (59910784-59910967) | |
| 704-864, gnl|rheMac2|chr2 (78193783-78193600) | |
| 704-864, gnl|rn3|chr15 (18928086-18927902) | |
| 704-864, gnl|tetNig1|chr9 (2855904-2856079) | |
| 704-864, gnl|xenTro1|scaffold_80 (2238937-2239110) | |
| 959-1200, gnl|bosTau2|chr22 (31869126-31868871) | |
| 959-1200, gnl|Hg17|chr3 (58153572-58153318) | |
| 959-1200, gnl|Mm7|chr14 (5777950-5777691) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cty (0.5204) | |
| col (0.390016) | |
| ill (0.351185) | |
| duo (0.345602) | |
| nje (0.33184) | |
| nco (0.323468) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| col (0.390016) | |
| ill (0.351185) | |
| duo (0.345602) | |
| nje (0.33184) | |
| nco (0.323468) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| jca (0.11396) |