Ss1.1-LyN1-MLN01A060011.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAGCCGCCATCTTGCTTCTTTTTCTCGCTCGCTATCTCCCTCTTGGGAAGCAGCGAAA GTGCTTTGGCGGTTTGTCCATCTGCAGCTTCGGGTTCCGCGTCGCGTGGTCCTTCCAGCC GCCCCCTACCCCCAGTCTCCCTTCCCCCTTCCCTGATCAGAGCACGGCGGAGCCCCTAGA CGTGCGCAAACACACTCAGCTTGACACTCACCCTGGCCGGTAAGAAAAGCGAGGGCGTAG GAGCTGCGATCAAAGCGGGCCCCATCCGGGAGGGCTGGCGAAGGGCGCCCTGGGACGTGG GAGCTCACCCCGACCCTGGCGCCCAGAAACTGGGGAGACTTGTGGCGAGGACCTTCGGCC CGGGCATCCCCTTCTCTTTGGCTACCCTCTTCTCTGTGCCTGGGAAACCTCGGCCTCTAG CTCGGGGAGCGGGAAACCCGAGTCAGACCCGCCCCATGTGGTCTGCAGCGTGAGTTCCGG ACAGTCGGTCTTCTCCCACCCAGGCCCTGGGGGGTTAGGGCGTGGGGAATTAATGTGCGT TGCCGGGTAAAGGAAGGGAGTTTCCTTCCCGTGGGGCAGGCGGGTGCGAGGTCGCTTTCT GGCGTGGGGTTGCGTCCCCTGAACAACTCCAGGGCTCCTCTAAGGCCTTCAGTGCCTACC TCTTCTCCGTGTATGGGGAGGGTGAAATTTGCCGTGAGAAATGTGCGGGAGGGACAGGGT TAAACACCGGACTCGGTGAGAGGCTCTTGGGGGAATCAGGACCAGTCCTACTTCCGCTAG AGACGTGCTGCCCGAACTCCAAAGGCTTGTTGGAGAGATGGTGGTAAATCTGTTGGTTCA CCTTTAACATCTGACCAAGATGAAAAGCCTGGCCAGGATGAAAGCGCAGCCGGAACATCA GAGCAAAATGATATTCTTAAAGTGGTGGAAAAGAGAATAGCTTGTGGTCCCCCACAGGCT AAACTGAATGGACAACAGCCTGCCCTCGCTTCCCAATACAGAGCTATGATGCCTCCTTAT ATGTTTCAGCAATATCCAAGGATGGCCTATCCTCCTCTTCATGGTCCCATGAGGTTTCCA CCTTCTTTATCTGAAACAAACAAAGGCCTTCGAGGAAGAGGCCCACCTCCTTCATGGGCC TCTGAGCCTGAACGCCCCTCCATCCTTAGTGCATCAGAACTGAAGGAGCTTGATAAATTT GATAACCTAGATGCTGAAGCTGATGAAGGTTGGGCAGGTGCTCAGATGGAAGTAGATTAT ACAGAACAGCTAAATTTCAGTGATGATGATGAGCAAGGAAGTACTAGTCCTAAAGAGAAC AGCAGTGAGGATCAAGATTCAAAAGGCTCTGAAAACACTGAAAACCGAAAAGAAGCAGAT GAAGTTTACAACACTAAATCATCTTCTCAGATACCTGCCCAGCCACCTGTAGCAAAAGGT CCCTATGGGAAAGGACCTCCATTTAATCAGGATCGAGGACCATCCTCACACTTGCCACCA CCTCCAAAGTTGCTTGCACAGCAGCATCCTCCTCCAGACCGACAGGCAGCACCTGGAAGA CCAGGCCCTTTCCCCCCCAAGCAACAGGTCCCAGATGAAGATGAAATATGGAAGCAAAGA AGACGACAACAGTCAGAACTTTCTGCAGCAGTGGAACGTGCTCGTAAACGGCGTGAAGAG GAAGAGCGAAGAATGGAAGAACAGAGGAAAGCAGCGTGTGCAGAGAAACTGAAACGATTG GATGAAAAGCTTGGCATAGTGGACAAACAACCCTCTCCAGAGGAAATTAGAGAAAGGGAG CGAGAAAAAGAACGAGAAAAAGAACGAGAACGTGAGAAAGAACTTGAAAAAGAACAAGAA CGGGAGCGAGAGAAGGAGAGGGAAAAAGAAAGGGAAAGACAACAGGAGAAGGAAAAAGAA CTGGAGCGAGAGCAGGAAAAACAGAGAGAAATGGAAAAGGAAAGAAAGCAAGAAAAAGAG AAAGAAATAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAGCCGCCATCTTGCTTCTTTTTCTCGCTCGCTATCTCCCTCTTGGGAAGCAGCGAAA GTGCTTTGGCGGTTTGTCCATCTGCAGCTTCGGGTTCCGCGTCGCGTGGTCCTTCCAGCC GCCCCCTACCCCCAGTCTCCCTTCCCCCTTCCCTGATCAGAGCACGGCGGAGCCCCTAGA CGTGCGCAAACACACTCAGCTTGACACTCACCCTGGCCGGTAAGAAAAGCGAGGGCGTAG GAGCTGCGATCAAAGCGGGCCCCATCCGGGAGGGCTGGCGAAGGGCGCCCTGGGACGTGG GAGCTCACCCCGACCCTGGCGCCCAGAAACTGGGGAGACTTGTGGCGAGGACCTTCGGCC CGGGCATCCCCTTCTCTTTGGCTACCCTCTTCTCTGTGCCTGGGAAACCTCGGCCTCTAG CTCGGGGAGCGGGAAACCCGAGTCAGACCCGCCCCATGTGGTCTGCAGCGTGAGTTCCGG ACAGTCGGTCTTCTCCCACCCAGGCCCTGGGGGGTTAGGGCGTGGGGAATTAATGTGCGT TGCCGGGTAAAGGAAGGGAGTTTCCTTCCCGTGGGGCAGGCGGGTGCGAGGTCGCTTTCT GGCGTGGGGTTGCGTCCCCTGAACAACTCCAGGGCTCCTCTAAGGCCTTCAGTGCCTACC TCTTCTCCGTGTATGGGGAGGGTGAAATTTGCCGTGAGAAATGTGCGGGAGGGACAGGGT TAAACACCGGACTCGGTGAGAGGCTCTTGGGGGAATCAGGACCAGTCCTACTTCCGCTAG AGACGTGCTGCCCGAACTCCAAAGGCTTGTTGGAGAGATGGTGGTAAATCTGTTGGTTCA CCTTTAACATCTGACCAAGATGAAAAGCCTGGCCAGGATGAAAGCGCAGCCGGAACATCA GAGCAAAATGATATTCTTAAAGTGGTGGAAAAGAGAATAGCTTGTGGTCCCCCACAGGCT AAACTGAATGGACAACAGCCTGCCCTCGCTTCCCAATACAGAGCTATGATGCCTCCTTAT ATGTTTCAGCAATATCCAAGGATGGCCTATCCTCCTCTTCATGGTCCCATGAGGTTTCCA CCTTCTTTATCTGAAACAAACAAAGGCCTTCGAGGAAGAGGCCCACCTCCTTCATGGGCC TCTGAGCCTGAACGCCCCTCCATCCTTAGTGCATCAGAACTGAAGGAGCTTGATAAATTT GATAACCTAGATGCTGAAGCTGATGAAGGTTGGGCAGGTGCTCAGATGGAAGTAGATTAT ACAGAACAGCTAAATTTCAGTGATGATGATGAGCAAGGAAGTACTAGTCCTAAAGAGAAC AGCAGTGAGGATCAAGATTCAAAAGGCTCTGAAAACACTGAAAACCGAAAAGAAGCAGAT GAAGTTTACAACACTAAATCATCTTCTCAGATACCTGCCCAGCCACCTGTAGCAAAAGGT CCCTATGGGAAAGGACCTCCATTTAATCAGGATCGAGGACCATCCTCACACTTGCCACCA CCTCCAAAGTTGCTTGCACAGCAGCATCCTCCTCCAGACCGACAGGCAGCACCTGGAAGA CCAGGCCCTTTCCCCCCCAAGCAACAGGTCCCAGATGAAGATGAAATATGGAAGCAAAGA AGACGACAACAGTCAGAACTTTCTGCAGCAGTGGAACGTGCTCGTAAACGGCGTGAAGAG GAAGAGCGAAGAATGGAAGAACAGAGGAAAGCAGCGTGTGCAGAGAAACTGAAACGATTG GATGAAAAGCTTGGCATAGTGGACAAACAACCCTCTCCAGAGGAAATTAGAGAAAGGGAG CGAGAAAAAGAACGAGAAAAAGAACGAGAACGTGAGAAAGAACTTGAAAAAGAACAAGAA CGGGAGCGAGAGAAGGAGAGGGAAAAAGAAAGGGAAAGACAACAGGAGAAGGAAAAAGAA CTGGAGCGAGAGCAGGAAAAACAGAGAGAAATGGAAAAGGAAAGAAAGCAAGAAAAAGAG AAAGAAATAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-155, - strand, RNAz p=0.785099 | |
| 470-584, - strand, RNAz p=0.648652 | |
| 1122-1239, - strand, RNAz p=0.663916 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-155, - strand, RNAz p=0.785099 | |
| 470-584, - strand, RNAz p=0.648652 | |
| 1122-1239, - strand, RNAz p=0.663916 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-817, gnl|bosTau2|chr16 (27253487-27254307) | |
| 1-817, gnl|Hg17|chr1 (168186320-168187142) | |
| 1104-1239, gnl|bosTau2|chr16 (27290753-27290888) | |
| 1104-1239, gnl|canFam2|chr7 (30400202-30400048) | |
| 1104-1239, gnl|danRer3|chrNA (19004807-19004654) | |
| 1104-1239, gnl|dasNov1|scaffold_11471 (89387-89541) | |
| 1104-1239, gnl|echTel1|scaffold_308379 (35075-34922) | |
| 1104-1239, gnl|fr1|chrUn (207615807-207615920) | |
| 1104-1239, gnl|galGal2|chr8 (4723802-4723648) | |
| 1104-1239, gnl|hg17|chr1 (168224011-168224165) | |
| 1104-1239, gnl|Hg17|chr1 (168224018-168224153) | |
| 1104-1239, gnl|loxAfr1|scaffold_215265 (693-539) | |
| 1104-1239, gnl|mm7|chr1 (162676955-162676803) | |
| 1104-1239, gnl|Mm7|chr1 (162676946-162676811) | |
| 1104-1239, gnl|monDom2|scaffold_16 (22646697-22646851) | |
| 1104-1239, gnl|panTro1|chr1 (150514638-150514792) | |
| 1104-1239, gnl|rheMac2|chr1 (201235480-201235634) | |
| 1104-1239, gnl|rn3|chr13 (78387263-78387111) | |
| 1104-1239, gnl|tetNig1|chr4 (4475169-4475048) | |
| 1104-1239, gnl|xenTro1|scaffold_74 (996797-996646) | |
| 1323-1478, gnl|bosTau2|chr16 (27292537-27292692) | |
| 1323-1478, gnl|canFam2|chr7 (30398875-30398711) | |
| 1323-1478, gnl|echTel1|scaffold_308379 (34199-34043) | |
| 1323-1478, gnl|galGal2|chr8 (4723243-4723084) | |
| 1323-1478, gnl|hg17|chr1 (168225592-168225748) | |
| 1323-1478, gnl|Hg17|chr1 (168225615-168225770) | |
| 1323-1478, gnl|loxAfr1|scaffold_94952 (6120-5960) | |
| 1323-1478, gnl|mm7|chr1 (162675640-162675486) | |
| 1323-1478, gnl|Mm7|chr1 (162675617-162675462) | |
| 1323-1478, gnl|monDom2|scaffold_16 (22648488-22648644) | |
| 1323-1478, gnl|oryCun1|scaffold_171053 (3809-3656) | |
| 1323-1478, gnl|panTro1|chr1 (150516217-150516373) | |
| 1323-1478, gnl|rheMac2|chr1 (201237048-201237204) | |
| 1323-1478, gnl|rn3|chr13 (78386194-78386040) | |
| 1522-1992, gnl|bosTau2|chr16 (27296434-27296904) | |
| 1522-1992, gnl|Hg17|chr1 (168233137-168233595) | |
| 1522-1992, gnl|Mm7|chr1 (162672059-162671667) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-817, gnl|bosTau2|chr16 (27253487-27254307) | |
| 1-817, gnl|Hg17|chr1 (168186320-168187142) | |
| 1104-1239, gnl|bosTau2|chr16 (27290753-27290888) | |
| 1104-1239, gnl|canFam2|chr7 (30400202-30400048) | |
| 1104-1239, gnl|danRer3|chrNA (19004807-19004654) | |
| 1104-1239, gnl|dasNov1|scaffold_11471 (89387-89541) | |
| 1104-1239, gnl|echTel1|scaffold_308379 (35075-34922) | |
| 1104-1239, gnl|fr1|chrUn (207615807-207615920) | |
| 1104-1239, gnl|galGal2|chr8 (4723802-4723648) | |
| 1104-1239, gnl|hg17|chr1 (168224011-168224165) | |
| 1104-1239, gnl|Hg17|chr1 (168224018-168224153) | |
| 1104-1239, gnl|loxAfr1|scaffold_215265 (693-539) | |
| 1104-1239, gnl|mm7|chr1 (162676955-162676803) | |
| 1104-1239, gnl|Mm7|chr1 (162676946-162676811) | |
| 1104-1239, gnl|monDom2|scaffold_16 (22646697-22646851) | |
| 1104-1239, gnl|panTro1|chr1 (150514638-150514792) | |
| 1104-1239, gnl|rheMac2|chr1 (201235480-201235634) | |
| 1104-1239, gnl|rn3|chr13 (78387263-78387111) | |
| 1104-1239, gnl|tetNig1|chr4 (4475169-4475048) | |
| 1104-1239, gnl|xenTro1|scaffold_74 (996797-996646) | |
| 1323-1478, gnl|bosTau2|chr16 (27292537-27292692) | |
| 1323-1478, gnl|canFam2|chr7 (30398875-30398711) | |
| 1323-1478, gnl|echTel1|scaffold_308379 (34199-34043) | |
| 1323-1478, gnl|galGal2|chr8 (4723243-4723084) | |
| 1323-1478, gnl|hg17|chr1 (168225592-168225748) | |
| 1323-1478, gnl|Hg17|chr1 (168225615-168225770) | |
| 1323-1478, gnl|loxAfr1|scaffold_94952 (6120-5960) | |
| 1323-1478, gnl|mm7|chr1 (162675640-162675486) | |
| 1323-1478, gnl|Mm7|chr1 (162675617-162675462) | |
| 1323-1478, gnl|monDom2|scaffold_16 (22648488-22648644) | |
| 1323-1478, gnl|oryCun1|scaffold_171053 (3809-3656) | |
| 1323-1478, gnl|panTro1|chr1 (150516217-150516373) | |
| 1323-1478, gnl|rheMac2|chr1 (201237048-201237204) | |
| 1323-1478, gnl|rn3|chr13 (78386194-78386040) | |
| 1522-1992, gnl|bosTau2|chr16 (27296434-27296904) | |
| 1522-1992, gnl|Hg17|chr1 (168233137-168233595) | |
| 1522-1992, gnl|Mm7|chr1 (162672059-162671667) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| cje (0.165235) | |
| cki (0.165235) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| cty (0.10408) |