Non-Coding RNA Search

Ss1.1-LyN1-MLN01A060020.5

Sequence:


               
               GCGCCTGCCGGCTCTTCCGGGGCCCGGGAGCCAACCGAGGGCGTTCCACTCCGGGCTGCA
GCGGCGGGAGGGAGCCCAGTGGAGGCGCCCTCCCGAGGCAGCACTGCCCATGCTGACTAC
CCAGCCCTCCAGCTGCCGATGTCATGAGTAACACCACAGTGCCCAATGCCCCCCAGGCCA
ACAGCGACTCCATGGTGGGCTATGTGTTGGGGCCTTTCTTCCTCATCACCCTGGTCGGGG
TGGTGGTGGCTGTGGTAATGTATGTCCAGAAGAAAAAGCGGGTAGACCGGCTTCGCCATC
ACCTGCTCCCTATGTACAGCTATGACCCTGCTGAGGAGCTGCACGAGGCCGAGCAGGAGC
TGCTCTCTGACGTGGGAGACCCCAAGGTGGTACATGGCTGGCAGAGTGGCTACCAGCACA
AGCGGATGCCCTTGCTGGATGTCAAGACGTGACCCGAGCCCCTTGCCCTCATCTTCAGAA
CCATGGGGTCCTGGACCCTGCAGCCTGCTGCTTCCCCCCAACTCCCAGCTCACCTTCCTG
GGTCTCCACGCCCCCCACCCCCCTGTGCCTGGCAGCACCTGTTCCCTCAGCCCCACATAG
CAGCCAAGCCCCCAGTAGCATCTCACCCCCAGCTAGGCCTTCAGTTTTCTGGGGCCAAAG
GGCAGAGCTTCGCCCTCCCTGACCCAGCTGTGGAGCCACTTCTGTGGTGACAGGGCCTGA
TGTATAGTACTCTGTATGTATATTTTGTAAATAAAATGTTTTGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCTGCCGGCTCTTCCGGGGCCCGGGAGCCAACCGAGGGCGTTCCACTCCGGGCTGCA
GCGGCGGGAGGGAGCCCAGTGGAGGCGCCCTCCCGAGGCAGCACTGCCCATGCTGACTAC
CCAGCCCTCCAGCTGCCGATGTCATGAGTAACACCACAGTGCCCAATGCCCCCCAGGCCA
ACAGCGACTCCATGGTGGGCTATGTGTTGGGGCCTTTCTTCCTCATCACCCTGGTCGGGG
TGGTGGTGGCTGTGGTAATGTATGTCCAGAAGAAAAAGCGGGTAGACCGGCTTCGCCATC
ACCTGCTCCCTATGTACAGCTATGACCCTGCTGAGGAGCTGCACGAGGCCGAGCAGGAGC
TGCTCTCTGACGTGGGAGACCCCAAGGTGGTACATGGCTGGCAGAGTGGCTACCAGCACA
AGCGGATGCCCTTGCTGGATGTCAAGACGTGACCCGAGCCCCTTGCCCTCATCTTCAGAA
CCATGGGGTCCTGGACCCTGCAGCCTGCTGCTTCCCCCCAACTCCCAGCTCACCTTCCTG
GGTCTCCACGCCCCCCACCCCCCTGTGCCTGGCAGCACCTGTTCCCTCAGCCCCACATAG
CAGCCAAGCCCCCAGTAGCATCTCACCCCCAGCTAGGCCTTCAGTTTTCTGGGGCCAAAG
GGCAGAGCTTCGCCCTCCCTGACCCAGCTGTGGAGCCACTTCTGTGGTGACAGGGCCTGA
TGTATAGTACTCTGTATGTATATTTTGTAAATAAAATGTTTTGTGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57094422|ref|XP_532111.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57094422|ref|XP_532111.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-258, gnl|bosTau2|chr23 (7988637-7988448)
               

               
               69-258, gnl|Hg17|chr6 (34323621-34323432)
               

               
               69-258, gnl|Mm7|chr17 (25750383-25750189)
               


               
               280-389, gnl|bosTau2|chr23 (7987954-7987845)
               

               
               280-389, gnl|Hg17|chr6 (34322905-34322796)
               

               
               280-389, gnl|Mm7|chr17 (25749886-25749777)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-258, gnl|bosTau2|chr23 (7988637-7988448)
               

               
               69-258, gnl|Hg17|chr6 (34323621-34323432)
               

               
               69-258, gnl|Mm7|chr17 (25750383-25750189)
               


               
               280-389, gnl|bosTau2|chr23 (7987954-7987845)
               

               
               280-389, gnl|Hg17|chr6 (34322905-34322796)
               

               
               280-389, gnl|Mm7|chr17 (25749886-25749777)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)

	69-258, gnl\|bosTau2\|chr23 (7988637-7988448)
	69-258, gnl\|Hg17\|chr6 (34323621-34323432)
	69-258, gnl\|Mm7\|chr17 (25750383-25750189)

	280-389, gnl\|bosTau2\|chr23 (7987954-7987845)
	280-389, gnl\|Hg17\|chr6 (34322905-34322796)
	280-389, gnl\|Mm7\|chr17 (25749886-25749777)