Non-Coding RNA Search

Ss1.1-LyN1-MLN01A060053.5

Sequence:


               
               GCCATTTAACCGGTTTCCTTTTGCCGGGGAGGCCGCGCTGCTTCTCAAGTCTGCGAGGCA
TTTCTGCAGCTGATACAGTCAACTCCAGCCTGAAATAGAGGGCTCACATCGCCTGAGAAG
ATGCGCGCCCTGATTCCAGAGCCCCAGCTTGGAGACCTCATTGAGATTTTCCGCCCTTTC
TACAGACATTGGGCCATTTACGTTGGCGATGGATATGTGGTCCACCTGGCTCCCCCAAGC
GAAATTGCGGGAGCTGGCGCGGCCAGCCTCATGTCCGCGCTGACCGACAAGGCCCTGGTG
AAGAAGGAACTGCTGTACGAGGTGGCGGGGCGAGACCGGTACCAGGTCAACAACAAGCAT
GATGGCAAGTACTCACCGCTGCCTCCCAGCAAAATCGTCCAGCGGGCGGAGGAGCTGGTG
GGCCAGGAGGTGCTCTACAAGCTGACCAGCGAGAACTGCGAGCACTTTGTCAACGAGCTG
CGCTACGGGGTCGCCCGCAGCGACCAGGTCAGAGATGCCATCATGGCAGCTGGCATCGCA
GGAGTGGGCCTGGCTGCTGTGAGCTTCATTGGCGTCATGCTCTCCAGAAACAAGCGGCAA
AAGCAATGAGTGGAAAGGGCTGTCCTGTCAGCCGTGACTTTATACATTAAGGGGGTCTTG
TTTTGCTAGAGGGTTTGAGGTTTGGTTTGTAGCTTTCATTCTGTTTTATAATGAGGTTTA
TTTTCACCGAATAAAATAAAGCCCAAGAAGGGAGGATTTTACTGGGAAAACTGCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATTTAACCGGTTTCCTTTTGCCGGGGAGGCCGCGCTGCTTCTCAAGTCTGCGAGGCA
TTTCTGCAGCTGATACAGTCAACTCCAGCCTGAAATAGAGGGCTCACATCGCCTGAGAAG
ATGCGCGCCCTGATTCCAGAGCCCCAGCTTGGAGACCTCATTGAGATTTTCCGCCCTTTC
TACAGACATTGGGCCATTTACGTTGGCGATGGATATGTGGTCCACCTGGCTCCCCCAAGC
GAAATTGCGGGAGCTGGCGCGGCCAGCCTCATGTCCGCGCTGACCGACAAGGCCCTGGTG
AAGAAGGAACTGCTGTACGAGGTGGCGGGGCGAGACCGGTACCAGGTCAACAACAAGCAT
GATGGCAAGTACTCACCGCTGCCTCCCAGCAAAATCGTCCAGCGGGCGGAGGAGCTGGTG
GGCCAGGAGGTGCTCTACAAGCTGACCAGCGAGAACTGCGAGCACTTTGTCAACGAGCTG
CGCTACGGGGTCGCCCGCAGCGACCAGGTCAGAGATGCCATCATGGCAGCTGGCATCGCA
GGAGTGGGCCTGGCTGCTGTGAGCTTCATTGGCGTCATGCTCTCCAGAAACAAGCGGCAA
AAGCAATGAGTGGAAAGGGCTGTCCTGTCAGCCGTGACTTTATACATTAAGGGGGTCTTG
TTTTGCTAGAGGGTTTGAGGTTTGGTTTGTAGCTTTCATTCTGTTTTATAATGAGGTTTA
TTTTCACCGAATAAAATAAAGCCCAAGAAGGGAGGATTTTACTGGGAAAACTGCAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55732202|emb|CAH92805.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55732202|emb|CAH92805.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               233-509, gnl|bosTau2|chr29 (35091650-35091926)
               

               
               233-509, gnl|Hg17|chr11 (63114422-63114146)
               

               
               233-509, gnl|Mm7|chr19 (7398809-7399085)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               233-509, gnl|bosTau2|chr29 (35091650-35091926)
               

               
               233-509, gnl|Hg17|chr11 (63114422-63114146)
               

               
               233-509, gnl|Mm7|chr19 (7398809-7399085)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               duo (0.691204)
               

               
               cov (0.528611)
               

               
               cje (0.495704)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.691204)
               

               
               cov (0.528611)
               

               
               cje (0.495704)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	233-509, gnl\|bosTau2\|chr29 (35091650-35091926)
	233-509, gnl\|Hg17\|chr11 (63114422-63114146)
	233-509, gnl\|Mm7\|chr19 (7398809-7399085)

	duo (0.691204)
	cov (0.528611)
	cje (0.495704)
	cag (0.302389)
	jej (0.296765)
	pgl (0.236967)
	cty (0.20816)
	hea (0.204499)
	nlu (0.191681)
	nep (0.183925)
	sto (0.179824)
	fbs (0.175346)
	nje (0.16592)
	nco (0.161734)
	fat (0.147427)
	lin (0.145603)
	bla (0.124347)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)