Non-Coding RNA Search

Ss1.1-LyN1-MLN01A060094.5

Sequence:


               
               AGCTTGTCCTCCGGTCGCGTTGCCACCACAGCGGCCGCTGCCGGGCGCGGTTACGGCGGG
TCGGTTGGTGTGTCTTTCAGCGTCGATTTCTGTGCAGTTGAACGCCTGCCATGGCTGATT
TAGATCCGTTCGGCGCCCCCGCCGGCCCCTCGCTGGGGAACGGAGTGGCCGGCGAGGAGG
ACCCGGCCGCGGCCTTCTTGGCGCAGCAGGAGAGCGAGATTGCTGGCATCGAGAACGACG
AGGCCTTCGCCATCCTGGACGGAGGCGCTCCTGGGCCCCAGCCGCACGGCGAGCCGCCGG
GGGGTCCGGATGCCGTTGATGGAGTGATGAATGGCGAATACTACCAGGAGAGTAATGGGC
CGACAGACAGTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTA
TCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGATGCCAATTCTCGGA
AGCAGGAAGCAGAGTGGAAAGAAAAAGCAATAAAGGAGCTGGAAGAGTGGTATGCAAGGC
AGGACGAGCAGTTACAAAAGACGAAAGCAAACAACAGGGCAGCAGAAGAAGCCTTTGTAA
ATGACATTGAAGAGTCGTCCCCAGGCACGGAGTGGGAACGGGTGGCCCGGCTGTGTGACT
TTAACCCCAAGTCCAGCAAGCAGGCCAAAGATGTCTCCCGCATGCGTTCTGTCCTCATCT
CCCTCAAGCAGGCCCCCCTGGTGCACTGAAGAGCCACCATGTGGAAACACTACATCTGCA
ATATCTTAATCCTACTCAGTGAAGCTCTTCACAGTAATTGGATTAATTATGTTGAGTTCT
TTTGGACCAAACCTTTTTGTCTTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTC
AACTGTGTTCTCCCTGGCATTCAGAGAGGAGCGGAGGCGCCCAGGGAAGGGAGGGAGGCC
TCCCAAGGGCAGCCTCAACCTCTGCTTTTGTGCATTATTCTGAGAATAAATTTCTGTTTA
AAACTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTGTCCTCCGGTCGCGTTGCCACCACAGCGGCCGCTGCCGGGCGCGGTTACGGCGGG
TCGGTTGGTGTGTCTTTCAGCGTCGATTTCTGTGCAGTTGAACGCCTGCCATGGCTGATT
TAGATCCGTTCGGCGCCCCCGCCGGCCCCTCGCTGGGGAACGGAGTGGCCGGCGAGGAGG
ACCCGGCCGCGGCCTTCTTGGCGCAGCAGGAGAGCGAGATTGCTGGCATCGAGAACGACG
AGGCCTTCGCCATCCTGGACGGAGGCGCTCCTGGGCCCCAGCCGCACGGCGAGCCGCCGG
GGGGTCCGGATGCCGTTGATGGAGTGATGAATGGCGAATACTACCAGGAGAGTAATGGGC
CGACAGACAGTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTA
TCCGTAAATGGAGAGAAGAGCAAACGGAACGCTTGGAAGCCCTTGATGCCAATTCTCGGA
AGCAGGAAGCAGAGTGGAAAGAAAAAGCAATAAAGGAGCTGGAAGAGTGGTATGCAAGGC
AGGACGAGCAGTTACAAAAGACGAAAGCAAACAACAGGGCAGCAGAAGAAGCCTTTGTAA
ATGACATTGAAGAGTCGTCCCCAGGCACGGAGTGGGAACGGGTGGCCCGGCTGTGTGACT
TTAACCCCAAGTCCAGCAAGCAGGCCAAAGATGTCTCCCGCATGCGTTCTGTCCTCATCT
CCCTCAAGCAGGCCCCCCTGGTGCACTGAAGAGCCACCATGTGGAAACACTACATCTGCA
ATATCTTAATCCTACTCAGTGAAGCTCTTCACAGTAATTGGATTAATTATGTTGAGTTCT
TTTGGACCAAACCTTTTTGTCTTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTC
AACTGTGTTCTCCCTGGCATTCAGAGAGGAGCGGAGGCGCCCAGGGAAGGGAGGGAGGCC
TCCCAAGGGCAGCCTCAACCTCTGCTTTTGTGCATTATTCTGAGAATAAATTTCTGTTTA
AAACTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6PFA2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PFA2_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               96-850, - strand, RNAz p=0.993349
               

               
               419-538, - strand, RNAz p=0.919532

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-850, - strand, RNAz p=0.993349
               

               
               419-538, - strand, RNAz p=0.919532

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               56-271, gnl|bosTau2|chr10 (879936-879722)
               

               
               56-271, gnl|Mm7|chr4 (44026553-44026784)
               


               
               304-1041, gnl|bosTau2|chr10 (879725-879006)
               

               
               304-1041, gnl|Hg17|chr12 (7650758-7651500)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-271, gnl|bosTau2|chr10 (879936-879722)
               

               
               56-271, gnl|Mm7|chr4 (44026553-44026784)
               


               
               304-1041, gnl|bosTau2|chr10 (879725-879006)
               

               
               304-1041, gnl|Hg17|chr12 (7650758-7651500)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               fbs (0.876732)
               

               
               ebs (0.709807)
               

               
               cly (0.603209)
               

               
               fhi (0.508733)
               

               
               nbm (0.496623)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               clu (0.358938)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.876732)
               

               
               ebs (0.709807)
               

               
               cly (0.603209)
               

               
               fhi (0.508733)
               

               
               nbm (0.496623)
               

               
               jej (0.494609)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               clu (0.358938)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	96-850, - strand, RNAz p=0.993349
	419-538, - strand, RNAz p=0.919532

	56-271, gnl\|bosTau2\|chr10 (879936-879722)
	56-271, gnl\|Mm7\|chr4 (44026553-44026784)

	304-1041, gnl\|bosTau2\|chr10 (879725-879006)
	304-1041, gnl\|Hg17\|chr12 (7650758-7651500)

	fbs (0.876732)
	ebs (0.709807)
	cly (0.603209)
	fhi (0.508733)
	nbm (0.496623)
	jej (0.494609)
	nco (0.485201)
	csp (0.483559)
	cag (0.453583)
	pty (0.428143)
	amn (0.417711)
	nmm (0.398406)
	eje (0.395335)
	col (0.390016)
	clu (0.358938)
	duo (0.345602)
	ecc (0.345105)
	cli (0.305623)
	eli (0.303628)
	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)
	cty (0.20816)
	fli (0.202881)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	nje (0.16592)
	cje (0.165235)
	hlv (0.139256)
	nca (0.136874)
	cov (0.132153)
	eru (0.120048)
	spc (0.113366)