Ss1.1-LyN1-MLN01A070040.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTGCGGGGGGCAAGACAGCCATTTCAGGGCCTGGGTCCCCGCTGGGTTTCTCTGAGTT GAAGCGGAGGTGGAAGGAAACACGGTGTTTATCCTCCCCAGTGGTCTGGATGAGGGGAAC TCAGCCCTGATGGGAAACGCCGCTCTTTGAAATCTCCATTCCAAATGTGTACTTGGTGAC TTTCTTCCCAGATGCTGAGGTGCCTGGATCCCTGGCGCAGGCCTTTACTGAGCTGCAGTT GGAGTAGGCTGTGCCTTGTGAAGCAGTATTTGTTTACAATGAAGTTGCAGTCTCCAGAAT TCCAGTCACTTTTCACAGAAGGATTGAAGACTCTGACAGAATTATTTGTCAAAGAAAATC ATGAACTGCGAATAGCAGGAGGAGCAGTGAGGGATTTATTAAGTGGAGTAAAGCCTCAGG ATGTGGATTTTGCCACCACTGCCACCCCCGTGCAGATGAAGGAGCTCTTCCAGTCGGTTG GCATCCGTATGATTAACAATAAAGGAGAAAAGCACGGAACGATTACTGCCAGGCTTCATG AAGAAAATTTTGAAATTACTACACTACGGGTTGATGTTGCCACCGATGGAAGACACGCTG AGGTTGAATTCACAACTGACTGGCAGAAAGACGCTGAGCGCAGAGATCTAACTATAAATT CTATGTTTTTAGGTTTTGATGGTACTTTATTTGACTACTTTAATGGTTATGAAGATTTAA AAAATAAGAAAGTTAGATTTGTTGGACAAGCTAAACAGAGGATACAAGAAGATTATCTTC GAATTTTAAGATATTTCAGGTTTTATGGGAAAATTGTAGATAAACCTGGTGACCATGATC CTGAGACTTTGGAAGCAATTGCAGAAAATGCAAAAGGCTTGGCTGGAATATCAGGCGAGA GGATTTGGGTGGAACTGAAAAAAATTCTTACTGGTAACCACGTAAATCATTTGATTCACC TCATGTATGATCTTGATGTGGCTCCTTACATAGGATTACCTGCCAATGCAAGTTTAGAAG AATTTAACAAAGTCAGTAAAAATGTTGAAGGTTTTTCACCAAAGCCAATGACTCTCTTAA CCTCATTATTCAGAGTACAGGATGATGTCACAAAATTGGATCTGAGGTTGAAGATTTCAA AAGAAGAGAAGAATCTTGGTTTATTTATAGTTAAAAACAGGAAGGATTTAATTAAAGCAA AAGACAGTTCAGAACCACTGAAACCCTATCAAGACTTTATCATAGATTGTAGAGAATCTG ATGCAACTGCTCGTGTATGTGAGCTCCTCAAGTACCAAGGAGAGCACTGTCTTCTGAAGG AGATGCAGCAATGGTCCATTCCTCCATTTCCTGTAAGTGGCCATGACATCAGAAAAGTGG GCATTTCTTCCGGAAAAGAAATTGGGGCTCTCTTACAACAGTTGAGAGAACAGTGGAAGA AAAGTGGTTACCAAATGGAAAAAGATGAACTTTTAAGTTACATAAAGAAGACGTAAAATT GATGAGAACTGGCCACTAAAAAGTAGAAAATGTTTGGTAAGCTTAGTTTTTTTGCCCCCT CCTTAGTGACAATTAAGAGATTTGAATATGTAGCAAAAACAAAAAAACAAACCAAAAAAC CAGCTTCGAGGATCTATTCAGAAGAATAAATGTCTTATTTTATGAAATAAATTATATTTC GGGCACTAAAGTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTGCGGGGGGCAAGACAGCCATTTCAGGGCCTGGGTCCCCGCTGGGTTTCTCTGAGTT GAAGCGGAGGTGGAAGGAAACACGGTGTTTATCCTCCCCAGTGGTCTGGATGAGGGGAAC TCAGCCCTGATGGGAAACGCCGCTCTTTGAAATCTCCATTCCAAATGTGTACTTGGTGAC TTTCTTCCCAGATGCTGAGGTGCCTGGATCCCTGGCGCAGGCCTTTACTGAGCTGCAGTT GGAGTAGGCTGTGCCTTGTGAAGCAGTATTTGTTTACAATGAAGTTGCAGTCTCCAGAAT TCCAGTCACTTTTCACAGAAGGATTGAAGACTCTGACAGAATTATTTGTCAAAGAAAATC ATGAACTGCGAATAGCAGGAGGAGCAGTGAGGGATTTATTAAGTGGAGTAAAGCCTCAGG ATGTGGATTTTGCCACCACTGCCACCCCCGTGCAGATGAAGGAGCTCTTCCAGTCGGTTG GCATCCGTATGATTAACAATAAAGGAGAAAAGCACGGAACGATTACTGCCAGGCTTCATG AAGAAAATTTTGAAATTACTACACTACGGGTTGATGTTGCCACCGATGGAAGACACGCTG AGGTTGAATTCACAACTGACTGGCAGAAAGACGCTGAGCGCAGAGATCTAACTATAAATT CTATGTTTTTAGGTTTTGATGGTACTTTATTTGACTACTTTAATGGTTATGAAGATTTAA AAAATAAGAAAGTTAGATTTGTTGGACAAGCTAAACAGAGGATACAAGAAGATTATCTTC GAATTTTAAGATATTTCAGGTTTTATGGGAAAATTGTAGATAAACCTGGTGACCATGATC CTGAGACTTTGGAAGCAATTGCAGAAAATGCAAAAGGCTTGGCTGGAATATCAGGCGAGA GGATTTGGGTGGAACTGAAAAAAATTCTTACTGGTAACCACGTAAATCATTTGATTCACC TCATGTATGATCTTGATGTGGCTCCTTACATAGGATTACCTGCCAATGCAAGTTTAGAAG AATTTAACAAAGTCAGTAAAAATGTTGAAGGTTTTTCACCAAAGCCAATGACTCTCTTAA CCTCATTATTCAGAGTACAGGATGATGTCACAAAATTGGATCTGAGGTTGAAGATTTCAA AAGAAGAGAAGAATCTTGGTTTATTTATAGTTAAAAACAGGAAGGATTTAATTAAAGCAA AAGACAGTTCAGAACCACTGAAACCCTATCAAGACTTTATCATAGATTGTAGAGAATCTG ATGCAACTGCTCGTGTATGTGAGCTCCTCAAGTACCAAGGAGAGCACTGTCTTCTGAAGG AGATGCAGCAATGGTCCATTCCTCCATTTCCTGTAAGTGGCCATGACATCAGAAAAGTGG GCATTTCTTCCGGAAAAGAAATTGGGGCTCTCTTACAACAGTTGAGAGAACAGTGGAAGA AAAGTGGTTACCAAATGGAAAAAGATGAACTTTTAAGTTACATAAAGAAGACGTAAAATT GATGAGAACTGGCCACTAAAAAGTAGAAAATGTTTGGTAAGCTTAGTTTTTTTGCCCCCT CCTTAGTGACAATTAAGAGATTTGAATATGTAGCAAAAACAAAAAAACAAACCAAAAAAC CAGCTTCGAGGATCTATTCAGAAGAATAAATGTCTTATTTTATGAAATAAATTATATTTC GGGCACTAAAGTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr22 (18184100-18183939) | |
| 1-164, gnl|Hg17|chr3 (3143963-3144107) | |
| 174-339, gnl|bosTau2|chr22 (18183291-18183126) | |
| 174-339, gnl|Hg17|chr3 (3145707-3145872) | |
| 174-339, gnl|Mm7|chr6 (106863936-106864101) | |
| 670-801, gnl|bosTau2|chr22 (18166090-18165959) | |
| 670-801, gnl|canFam2|chr20 (17282547-17282637) | |
| 670-801, gnl|canFam2|chr20 (17282673-17282570) | |
| 670-801, gnl|danRer3|chr6 (27817655-27817777) | |
| 670-801, gnl|danRer3|chr6 (27817720-27817615) | |
| 670-801, gnl|dasNov1|scaffold_17510 (809-722) | |
| 670-801, gnl|dasNov1|scaffold_17510 (686-786) | |
| 670-801, gnl|echTel1|scaffold_309864 (119533-119443) | |
| 670-801, gnl|echTel1|scaffold_310353 (7141-7244) | |
| 670-801, gnl|fr1|chrUn (102051976-102052073) | |
| 670-801, gnl|galGal2|chr12 (18038834-18038936) | |
| 670-801, gnl|hg17|chr22 (44509517-44509599) | |
| 670-801, gnl|hg17|chr3 (3161266-3161369) | |
| 670-801, gnl|Hg17|chr3 (3161265-3161396) | |
| 670-801, gnl|loxAfr1|scaffold_28795 (21322-21412) | |
| 670-801, gnl|loxAfr1|scaffold_28795 (21448-21345) | |
| 670-801, gnl|mm7|chr6 (106870215-106870318) | |
| 670-801, gnl|Mm7|chr6 (106870214-106870345) | |
| 670-801, gnl|monDom2|scaffold_5 (28420223-28420146) | |
| 670-801, gnl|monDom2|scaffold_5 (28414996-28415099) | |
| 670-801, gnl|oryCun1|scaffold_147263 (3983-4073) | |
| 670-801, gnl|oryCun1|scaffold_147263 (4109-4006) | |
| 670-801, gnl|panTro1|chr2 (3211833-3211936) | |
| 670-801, gnl|panTro1|chr23_random (14114992-14114910) | |
| 670-801, gnl|rheMac2|chr10 (89791865-89791947) | |
| 670-801, gnl|rheMac2|chr2 (57861813-57861710) | |
| 670-801, gnl|rn3|chr1 (174715980-174716070) | |
| 670-801, gnl|rn3|chr4 (142376739-142376842) | |
| 670-801, gnl|tetNig1|chr11 (10282635-10282737) | |
| 670-801, gnl|xenTro1|scaffold_173 (1574834-1574936) | |
| 992-1246, gnl|bosTau2|chr22 (18161953-18161699) | |
| 992-1246, gnl|canFam2|chr20 (17279520-17279675) | |
| 992-1246, gnl|danRer3|chr6 (27814730-27814891) | |
| 992-1246, gnl|dasNov1|scaffold_17510 (1260-1105) | |
| 992-1246, gnl|echTel1|scaffold_309864 (119978-119829) | |
| 992-1246, gnl|fr1|chrUn (102052816-102052652) | |
| 992-1246, gnl|hg17|chr22 (44509074-44509229) | |
| 992-1246, gnl|Hg17|chr3 (3164132-3164386) | |
| 992-1246, gnl|loxAfr1|scaffold_44775 (2550-2405) | |
| 992-1246, gnl|mm7|chr6 (106873140-106872985) | |
| 992-1246, gnl|Mm7|chr6 (106872884-106873138) | |
| 992-1246, gnl|monDom2|scaffold_5 (28422931-28422776) | |
| 992-1246, gnl|panTro1|chr23_random (14115435-14115280) | |
| 992-1246, gnl|rheMac2|chr10 (89791423-89791578) | |
| 992-1246, gnl|rn3|chr1 (174715529-174715684) | |
| 992-1246, gnl|tetNig1|chr11 (10283620-10283449) | |
| 1250-1695, gnl|bosTau2|chr22 (18161507-18161070) | |
| 1250-1695, gnl|Hg17|chr3 (3164592-3165006) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr22 (18184100-18183939) | |
| 1-164, gnl|Hg17|chr3 (3143963-3144107) | |
| 174-339, gnl|bosTau2|chr22 (18183291-18183126) | |
| 174-339, gnl|Hg17|chr3 (3145707-3145872) | |
| 174-339, gnl|Mm7|chr6 (106863936-106864101) | |
| 670-801, gnl|bosTau2|chr22 (18166090-18165959) | |
| 670-801, gnl|canFam2|chr20 (17282547-17282637) | |
| 670-801, gnl|canFam2|chr20 (17282673-17282570) | |
| 670-801, gnl|danRer3|chr6 (27817655-27817777) | |
| 670-801, gnl|danRer3|chr6 (27817720-27817615) | |
| 670-801, gnl|dasNov1|scaffold_17510 (809-722) | |
| 670-801, gnl|dasNov1|scaffold_17510 (686-786) | |
| 670-801, gnl|echTel1|scaffold_309864 (119533-119443) | |
| 670-801, gnl|echTel1|scaffold_310353 (7141-7244) | |
| 670-801, gnl|fr1|chrUn (102051976-102052073) | |
| 670-801, gnl|galGal2|chr12 (18038834-18038936) | |
| 670-801, gnl|hg17|chr22 (44509517-44509599) | |
| 670-801, gnl|hg17|chr3 (3161266-3161369) | |
| 670-801, gnl|Hg17|chr3 (3161265-3161396) | |
| 670-801, gnl|loxAfr1|scaffold_28795 (21322-21412) | |
| 670-801, gnl|loxAfr1|scaffold_28795 (21448-21345) | |
| 670-801, gnl|mm7|chr6 (106870215-106870318) | |
| 670-801, gnl|Mm7|chr6 (106870214-106870345) | |
| 670-801, gnl|monDom2|scaffold_5 (28420223-28420146) | |
| 670-801, gnl|monDom2|scaffold_5 (28414996-28415099) | |
| 670-801, gnl|oryCun1|scaffold_147263 (3983-4073) | |
| 670-801, gnl|oryCun1|scaffold_147263 (4109-4006) | |
| 670-801, gnl|panTro1|chr2 (3211833-3211936) | |
| 670-801, gnl|panTro1|chr23_random (14114992-14114910) | |
| 670-801, gnl|rheMac2|chr10 (89791865-89791947) | |
| 670-801, gnl|rheMac2|chr2 (57861813-57861710) | |
| 670-801, gnl|rn3|chr1 (174715980-174716070) | |
| 670-801, gnl|rn3|chr4 (142376739-142376842) | |
| 670-801, gnl|tetNig1|chr11 (10282635-10282737) | |
| 670-801, gnl|xenTro1|scaffold_173 (1574834-1574936) | |
| 992-1246, gnl|bosTau2|chr22 (18161953-18161699) | |
| 992-1246, gnl|canFam2|chr20 (17279520-17279675) | |
| 992-1246, gnl|danRer3|chr6 (27814730-27814891) | |
| 992-1246, gnl|dasNov1|scaffold_17510 (1260-1105) | |
| 992-1246, gnl|echTel1|scaffold_309864 (119978-119829) | |
| 992-1246, gnl|fr1|chrUn (102052816-102052652) | |
| 992-1246, gnl|hg17|chr22 (44509074-44509229) | |
| 992-1246, gnl|Hg17|chr3 (3164132-3164386) | |
| 992-1246, gnl|loxAfr1|scaffold_44775 (2550-2405) | |
| 992-1246, gnl|mm7|chr6 (106873140-106872985) | |
| 992-1246, gnl|Mm7|chr6 (106872884-106873138) | |
| 992-1246, gnl|monDom2|scaffold_5 (28422931-28422776) | |
| 992-1246, gnl|panTro1|chr23_random (14115435-14115280) | |
| 992-1246, gnl|rheMac2|chr10 (89791423-89791578) | |
| 992-1246, gnl|rn3|chr1 (174715529-174715684) | |
| 992-1246, gnl|tetNig1|chr11 (10283620-10283449) | |
| 1250-1695, gnl|bosTau2|chr22 (18161507-18161070) | |
| 1250-1695, gnl|Hg17|chr3 (3164592-3165006) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| ssp (0.406559) | |
| elu (0.385356) | |
| sag (0.36543) | |
| vin (0.332557) | |
| cje (0.330469) | |
| liv (0.292569) | |
| tra (0.246184) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.406559) | |
| elu (0.385356) | |
| sag (0.36543) | |
| vin (0.332557) | |
| cje (0.330469) | |
| liv (0.292569) | |
| tra (0.246184) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |