Ss1.1-LyN1-MLN01A070045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCAGTGAGCGAGAGGAGGGGGCTCGCCCGCGGGAGACCCGCGGAGTGGGGCCAGCGGC TCTTTCTGCTGCTGCTGTTAGGAGGCTGCTCTGGGCGCATCCACCGGCTGACGCTGACGG GGGAGAAGCGAGCCGACATCCAGCTGAACAGCTTTGGCTTCTACACCAACGGCTCTCTGG AGGTAGACCTGAGCCTCCTGCGGCTGGGCCTCCAGGAGACAGAAGAGAAAGCTCCGCTGG TGGGGTTCAGTCTGACCCGAGTTCGATCTGGCAGTGTTCGCTCCTACTCAAGCCAGCACT CCCACGACTGCCCTCTCCATAGAAACAGCAGCAACCTCCTGGTTCTCTTCCTCATCAACA CCAAGGATCTGCAGGTCCAGGTGCGGAAGTATGGAGAGCAGAAGAAGCTGTTCATCTCTC CTGGGCTCCTTCCAGAAGTGCCCTCCAAACCAGGGCTCCCAAAATCAGAGCACCCGGATA CCCCTAAGGTGGATGGTGGGACCACCACTGCGCCCGACAAGGCCAAGGCAACACCCACAG TGTCCCAAGGAGACCAGCAGGGCATCAATGGGAAGGACCAGGAACTGGTGTTGGGCCTGG GCCATCTCAACAACTCCTACAATTTCAGTTTCCATGTGGTGATCGGCTCTAGGGCCGAGG AAGGCCAGTACAACCTCAACTTCCACAACTGCCACAACTCCGTGCCAGGCCAGGAGCAAC CATTCGACATCACGGTCATGATCCGGGAGAAGAACCCGGAGGGTTTCCTGTCGGCAGCGG AAATCCCCCTCTTCAAGCTGTACATGGTCATGTCCGCCTGCTTCCTGGCCGCCGGTGTCT TCTGGGTGTCTGTCCTCTGCAAGAACACGTACAACGTCTTCAAGATCCACTGGCTCATGG CAGCCCTGGCTTTCACCAAGAGCATCTCTCTCCTCTTCCACAGTATCAACTACTACTTCA TCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCTGTCATGCACTACATCACGCATCTGC TGAAGGGTGCCCTCCTCTTCATCACCATTGCCCTAATCGGCTCGGGCTGGGCCTTCGTCA AGTACGTCCTGTCCGACAAGGAGAAGAAGATCTTCGGGATCGTGATCCCACTGCAGGTCC TAGCCAACGTGGCCTACATCGTCATCGAGTCACGTGAGGAGGGCGCCAGCGACTATGGGA TCTGGAAGGAGATCCTCTTCCTGGTGGATCTCATCTGCTGTGGCGCCATCCTCTTCCCCG TGGTCTGGTCCATCCGGCATCTCCAGGATGCTTCTGGCACTGATGGGAAAGTGGCAGTGA ACCTGGCCAAGCTGAAGCTGTTCCGGCATTACTATGTTATGGTCATCTGTTACATCTACT TTACGCGGATCATCGCCATCCTGCTGCAGGTAGCCGTGCCCTTCCAGTGGCAGTGGCTGT ACCAGTTCTTGGTGGAGGGCTCCACGCTCGCTTTCTTCGTGCTCACGGGCTACAAGTTCC AGCCGGCAAGGGATAACCCATACCTACAGCTGCCCCAAGAGGACGAGGAGGACGTGCAGA TGGAGCAAGTAATGACGGATTCTGGGTTCCGGGAAGGCCTGTCCAAAGTCAACAAAACGG CCAGCGGGCGAGAGTTGTTGTGATCAGGTCCCCTCTTCGGACGGTTCTTCACACTCCACC GTCCTCTTCTCACACATTCCTCACTCCTGCTTCTCCCAAAGCTAGTGCGGAGAGGAGGAG GGGGCGGGTGCTCACACGGCGCCCCGCTGCCGGGGACCCGAGTTCCTGGAGCCCGTTCGG AAGAAGACAGACAGCCCCCTTTCCCCCAAGTATTGAGCATCCTGTCCCCACCTGGGGACC ACCCTCCACTTGCTGCTGTACAATAATGACCAATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCAGTGAGCGAGAGGAGGGGGCTCGCCCGCGGGAGACCCGCGGAGTGGGGCCAGCGGC TCTTTCTGCTGCTGCTGTTAGGAGGCTGCTCTGGGCGCATCCACCGGCTGACGCTGACGG GGGAGAAGCGAGCCGACATCCAGCTGAACAGCTTTGGCTTCTACACCAACGGCTCTCTGG AGGTAGACCTGAGCCTCCTGCGGCTGGGCCTCCAGGAGACAGAAGAGAAAGCTCCGCTGG TGGGGTTCAGTCTGACCCGAGTTCGATCTGGCAGTGTTCGCTCCTACTCAAGCCAGCACT CCCACGACTGCCCTCTCCATAGAAACAGCAGCAACCTCCTGGTTCTCTTCCTCATCAACA CCAAGGATCTGCAGGTCCAGGTGCGGAAGTATGGAGAGCAGAAGAAGCTGTTCATCTCTC CTGGGCTCCTTCCAGAAGTGCCCTCCAAACCAGGGCTCCCAAAATCAGAGCACCCGGATA CCCCTAAGGTGGATGGTGGGACCACCACTGCGCCCGACAAGGCCAAGGCAACACCCACAG TGTCCCAAGGAGACCAGCAGGGCATCAATGGGAAGGACCAGGAACTGGTGTTGGGCCTGG GCCATCTCAACAACTCCTACAATTTCAGTTTCCATGTGGTGATCGGCTCTAGGGCCGAGG AAGGCCAGTACAACCTCAACTTCCACAACTGCCACAACTCCGTGCCAGGCCAGGAGCAAC CATTCGACATCACGGTCATGATCCGGGAGAAGAACCCGGAGGGTTTCCTGTCGGCAGCGG AAATCCCCCTCTTCAAGCTGTACATGGTCATGTCCGCCTGCTTCCTGGCCGCCGGTGTCT TCTGGGTGTCTGTCCTCTGCAAGAACACGTACAACGTCTTCAAGATCCACTGGCTCATGG CAGCCCTGGCTTTCACCAAGAGCATCTCTCTCCTCTTCCACAGTATCAACTACTACTTCA TCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCTGTCATGCACTACATCACGCATCTGC TGAAGGGTGCCCTCCTCTTCATCACCATTGCCCTAATCGGCTCGGGCTGGGCCTTCGTCA AGTACGTCCTGTCCGACAAGGAGAAGAAGATCTTCGGGATCGTGATCCCACTGCAGGTCC TAGCCAACGTGGCCTACATCGTCATCGAGTCACGTGAGGAGGGCGCCAGCGACTATGGGA TCTGGAAGGAGATCCTCTTCCTGGTGGATCTCATCTGCTGTGGCGCCATCCTCTTCCCCG TGGTCTGGTCCATCCGGCATCTCCAGGATGCTTCTGGCACTGATGGGAAAGTGGCAGTGA ACCTGGCCAAGCTGAAGCTGTTCCGGCATTACTATGTTATGGTCATCTGTTACATCTACT TTACGCGGATCATCGCCATCCTGCTGCAGGTAGCCGTGCCCTTCCAGTGGCAGTGGCTGT ACCAGTTCTTGGTGGAGGGCTCCACGCTCGCTTTCTTCGTGCTCACGGGCTACAAGTTCC AGCCGGCAAGGGATAACCCATACCTACAGCTGCCCCAAGAGGACGAGGAGGACGTGCAGA TGGAGCAAGTAATGACGGATTCTGGGTTCCGGGAAGGCCTGTCCAAAGTCAACAAAACGG CCAGCGGGCGAGAGTTGTTGTGATCAGGTCCCCTCTTCGGACGGTTCTTCACACTCCACC GTCCTCTTCTCACACATTCCTCACTCCTGCTTCTCCCAAAGCTAGTGCGGAGAGGAGGAG GGGGCGGGTGCTCACACGGCGCCCCGCTGCCGGGGACCCGAGTTCCTGGAGCCCGTTCGG AAGAAGACAGACAGCCCCCTTTCCCCCAAGTATTGAGCATCCTGTCCCCACCTGGGGACC ACCCTCCACTTGCTGCTGTACAATAATGACCAATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1650-1839, + strand, RNAz p=0.989972 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1650-1839, + strand, RNAz p=0.989972 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AX775899, + |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 119-245, gnl|bosTau2|chr7 (12898252-12898378) | |
| 119-245, gnl|Hg17|chr19 (6687723-6687597) | |
| 119-245, gnl|Mm7|chr17 (55457844-55457718) | |
| 374-493, gnl|bosTau2|chr7 (12900762-12900881) | |
| 374-493, gnl|canFam2|chr20 (56502962-56502793) | |
| 374-493, gnl|galGal2|chrUn (145702305-145702492) | |
| 374-493, gnl|hg17|chr19 (6685172-6685336) | |
| 374-493, gnl|Hg17|chr19 (6685318-6685199) | |
| 374-493, gnl|mm7|chr17 (55455184-55455339) | |
| 374-493, gnl|Mm7|chr17 (55455326-55455210) | |
| 374-493, gnl|monDom2|scaffold_85 (5236324-5236463) | |
| 374-493, gnl|panTro1|chr20 (7064225-7064389) | |
| 374-493, gnl|rheMac2|chr19 (6628993-6629157) | |
| 374-493, gnl|rn3|chrUn (64552759-64552909) | |
| 734-871, gnl|bosTau2|chr7 (12901590-12901727) | |
| 734-871, gnl|canFam2|chr20 (56503736-56503592) | |
| 734-871, gnl|danRer3|chr5 (27451387-27451251) | |
| 734-871, gnl|dasNov1|scaffold_148881 (182-44) | |
| 734-871, gnl|fr1|chrUn (175225835-175225692) | |
| 734-871, gnl|hg17|chr19 (6684178-6684322) | |
| 734-871, gnl|Hg17|chr19 (6684313-6684176) | |
| 734-871, gnl|loxAfr1|scaffold_42476 (867-723) | |
| 734-871, gnl|mm7|chr17 (55448566-55448708) | |
| 734-871, gnl|Mm7|chr17 (55448701-55448564) | |
| 734-871, gnl|monDom2|scaffold_85 (5234778-5234916) | |
| 734-871, gnl|oryCun1|scaffold_184048 (5154-5292) | |
| 734-871, gnl|panTro1|chr20 (7063184-7063328) | |
| 734-871, gnl|rheMac2|chr19 (6627612-6627756) | |
| 734-871, gnl|rn3|chrUn (64549321-64549463) | |
| 734-871, gnl|tetNig1|chr18 (9129240-9129096) | |
| 734-871, gnl|xenTro1|scaffold_983 (377312-377456) | |
| 1134-1269, gnl|bosTau2|chr11 (80661108-80661243) | |
| 1134-1269, gnl|canFam2|chr9 (57105736-57105587) | |
| 1134-1269, gnl|danRer3|chr5 (27456377-27456515) | |
| 1134-1269, gnl|dasNov1|scaffold_9750 (29180-29326) | |
| 1134-1269, gnl|echTel1|scaffold_313149 (44822-44677) | |
| 1134-1269, gnl|fr1|chrUn (175226628-175226770) | |
| 1134-1269, gnl|hg17|chr9 (129946250-129946396) | |
| 1134-1269, gnl|Hg17|chr9 (129946250-129946385) | |
| 1134-1269, gnl|loxAfr1|scaffold_42476 (1891-2030) | |
| 1134-1269, gnl|mm7|chr2 (31195991-31196141) | |
| 1134-1269, gnl|Mm7|chr2 (31195985-31196126) | |
| 1134-1269, gnl|monDom2|scaffold_51 (5178870-5179016) | |
| 1134-1269, gnl|oryCun1|scaffold_173959 (10405-10255) | |
| 1134-1269, gnl|panTro1|chr11 (114815486-114815632) | |
| 1134-1269, gnl|rheMac2|chr15 (8723919-8723773) | |
| 1134-1269, gnl|rn3|chr3 (10142992-10143142) | |
| 1134-1269, gnl|tetNig1|chr18 (9129866-9130009) | |
| 1134-1269, gnl|xenTro1|scaffold_983 (368987-368847) | |
| 1442-1570, gnl|bosTau2|chr7 (12903670-12903798) | |
| 1442-1570, gnl|Hg17|chr19 (6682126-6681998) | |
| 1442-1570, gnl|Mm7|chr17 (55446589-55446461) | |
| 1571-1896, gnl|bosTau2|chr7 (12904061-12904387) | |
| 1571-1896, gnl|Hg17|chr19 (6681395-6681075) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-245, gnl|bosTau2|chr7 (12898252-12898378) | |
| 119-245, gnl|Hg17|chr19 (6687723-6687597) | |
| 119-245, gnl|Mm7|chr17 (55457844-55457718) | |
| 374-493, gnl|bosTau2|chr7 (12900762-12900881) | |
| 374-493, gnl|canFam2|chr20 (56502962-56502793) | |
| 374-493, gnl|galGal2|chrUn (145702305-145702492) | |
| 374-493, gnl|hg17|chr19 (6685172-6685336) | |
| 374-493, gnl|Hg17|chr19 (6685318-6685199) | |
| 374-493, gnl|mm7|chr17 (55455184-55455339) | |
| 374-493, gnl|Mm7|chr17 (55455326-55455210) | |
| 374-493, gnl|monDom2|scaffold_85 (5236324-5236463) | |
| 374-493, gnl|panTro1|chr20 (7064225-7064389) | |
| 374-493, gnl|rheMac2|chr19 (6628993-6629157) | |
| 374-493, gnl|rn3|chrUn (64552759-64552909) | |
| 734-871, gnl|bosTau2|chr7 (12901590-12901727) | |
| 734-871, gnl|canFam2|chr20 (56503736-56503592) | |
| 734-871, gnl|danRer3|chr5 (27451387-27451251) | |
| 734-871, gnl|dasNov1|scaffold_148881 (182-44) | |
| 734-871, gnl|fr1|chrUn (175225835-175225692) | |
| 734-871, gnl|hg17|chr19 (6684178-6684322) | |
| 734-871, gnl|Hg17|chr19 (6684313-6684176) | |
| 734-871, gnl|loxAfr1|scaffold_42476 (867-723) | |
| 734-871, gnl|mm7|chr17 (55448566-55448708) | |
| 734-871, gnl|Mm7|chr17 (55448701-55448564) | |
| 734-871, gnl|monDom2|scaffold_85 (5234778-5234916) | |
| 734-871, gnl|oryCun1|scaffold_184048 (5154-5292) | |
| 734-871, gnl|panTro1|chr20 (7063184-7063328) | |
| 734-871, gnl|rheMac2|chr19 (6627612-6627756) | |
| 734-871, gnl|rn3|chrUn (64549321-64549463) | |
| 734-871, gnl|tetNig1|chr18 (9129240-9129096) | |
| 734-871, gnl|xenTro1|scaffold_983 (377312-377456) | |
| 1134-1269, gnl|bosTau2|chr11 (80661108-80661243) | |
| 1134-1269, gnl|canFam2|chr9 (57105736-57105587) | |
| 1134-1269, gnl|danRer3|chr5 (27456377-27456515) | |
| 1134-1269, gnl|dasNov1|scaffold_9750 (29180-29326) | |
| 1134-1269, gnl|echTel1|scaffold_313149 (44822-44677) | |
| 1134-1269, gnl|fr1|chrUn (175226628-175226770) | |
| 1134-1269, gnl|hg17|chr9 (129946250-129946396) | |
| 1134-1269, gnl|Hg17|chr9 (129946250-129946385) | |
| 1134-1269, gnl|loxAfr1|scaffold_42476 (1891-2030) | |
| 1134-1269, gnl|mm7|chr2 (31195991-31196141) | |
| 1134-1269, gnl|Mm7|chr2 (31195985-31196126) | |
| 1134-1269, gnl|monDom2|scaffold_51 (5178870-5179016) | |
| 1134-1269, gnl|oryCun1|scaffold_173959 (10405-10255) | |
| 1134-1269, gnl|panTro1|chr11 (114815486-114815632) | |
| 1134-1269, gnl|rheMac2|chr15 (8723919-8723773) | |
| 1134-1269, gnl|rn3|chr3 (10142992-10143142) | |
| 1134-1269, gnl|tetNig1|chr18 (9129866-9130009) | |
| 1134-1269, gnl|xenTro1|scaffold_983 (368987-368847) | |
| 1442-1570, gnl|bosTau2|chr7 (12903670-12903798) | |
| 1442-1570, gnl|Hg17|chr19 (6682126-6681998) | |
| 1442-1570, gnl|Mm7|chr17 (55446589-55446461) | |
| 1571-1896, gnl|bosTau2|chr7 (12904061-12904387) | |
| 1571-1896, gnl|Hg17|chr19 (6681395-6681075) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cty (0.31224) | |
| cag (0.151194) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| cag (0.151194) | |
| pty (0.142714) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jca (0.11396) |