Non-Coding RNA Search

Ss1.1-LyN1-MLN01A070081.5

Sequence:


               
               GCTGGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCCTTCAGTTTACAGGA
GACGTATGAGGCCAAAAGGAATGAGTTCCTAGGAGAGCTCCAGAAAAAGGAAGAAGAGAT
GAGACAGATGTTCGTCCAGAGAGTCAAAGAGAAAGAAGCTGAACTTAAAGAGGCAGAGAA
AGAGCTGCATGAGAAGTTTGACCGTCTGAAGAAACTACACCAGGACGAGAAGAAGAAGCT
GGAGGATAAGAAGAAATCCCTGGATGACGAAGTGAACGCTTTCAAACAGAGAAAGACGGC
GGCCGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGGAGGCTCACAGACGCTGAAAAGAGA
CAAAGAGAAGAAAAACTTTTTTTAATCTTGTCTTCAGCAGCTGCACTAAGTCTAAAGGAG
AAGACTGCCATTATAGAAGAGTTAGGGTTTCACATTGTCTCAAACCAGCCCTTTCTCTAA
TTCGCCCTTAACCCAAGCTGCGCGTGCACACACACAACCCTCCCCTCTCTTCCCGTCAAG
GTTTCTAGAAGTCCAAGAGTCCGAGGACAGGGTCAGGCCTCTGGTCAAGAAGCCAGCAGT
CGCATGGCTTGGAGATGCATCCTGCATCCCAGCCAGTGCTCCTCCCAGTGCCCCCAGCCG
GCCACTCCCCACCGCATCCTTGCCAGGGGGTGACATGTTCAGGGGTCCCATCTGCTACTC
CATACCACCAGCCTCCCTGTCCCAGCTGTCACTGCTACTTGTTTCCCTGAGGTATTTGCA
TCCACCATGACTGGGTGAGCACCGGTCACTGGGCCTCCCCAAACACCCCACAGCCCCTTC
TCAGAAGGTTCCAGAAGGAGGTCACTTGGTGCCTTTTCTTTCTGGCCTGTCAGCCCAGCC
CTTTCCAGTTTGGATGCACTCAAGCTGGATTCAGAATCTGGAATGAGTTTATTTACACCT
AGCCCTTCCCAGACAACACAACGACTGAAGAAAGTAGCATGTTTGCCCTCCTTATAATAT
GGGTACCCCACAGGTGCAGAAGGGAGAATAAACCTGAATATTATTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCCTTCAGTTTACAGGA
GACGTATGAGGCCAAAAGGAATGAGTTCCTAGGAGAGCTCCAGAAAAAGGAAGAAGAGAT
GAGACAGATGTTCGTCCAGAGAGTCAAAGAGAAAGAAGCTGAACTTAAAGAGGCAGAGAA
AGAGCTGCATGAGAAGTTTGACCGTCTGAAGAAACTACACCAGGACGAGAAGAAGAAGCT
GGAGGATAAGAAGAAATCCCTGGATGACGAAGTGAACGCTTTCAAACAGAGAAAGACGGC
GGCCGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGGAGGCTCACAGACGCTGAAAAGAGA
CAAAGAGAAGAAAAACTTTTTTTAATCTTGTCTTCAGCAGCTGCACTAAGTCTAAAGGAG
AAGACTGCCATTATAGAAGAGTTAGGGTTTCACATTGTCTCAAACCAGCCCTTTCTCTAA
TTCGCCCTTAACCCAAGCTGCGCGTGCACACACACAACCCTCCCCTCTCTTCCCGTCAAG
GTTTCTAGAAGTCCAAGAGTCCGAGGACAGGGTCAGGCCTCTGGTCAAGAAGCCAGCAGT
CGCATGGCTTGGAGATGCATCCTGCATCCCAGCCAGTGCTCCTCCCAGTGCCCCCAGCCG
GCCACTCCCCACCGCATCCTTGCCAGGGGGTGACATGTTCAGGGGTCCCATCTGCTACTC
CATACCACCAGCCTCCCTGTCCCAGCTGTCACTGCTACTTGTTTCCCTGAGGTATTTGCA
TCCACCATGACTGGGTGAGCACCGGTCACTGGGCCTCCCCAAACACCCCACAGCCCCTTC
TCAGAAGGTTCCAGAAGGAGGTCACTTGGTGCCTTTTCTTTCTGGCCTGTCAGCCCAGCC
CTTTCCAGTTTGGATGCACTCAAGCTGGATTCAGAATCTGGAATGAGTTTATTTACACCT
AGCCCTTCCCAGACAACACAACGACTGAAGAAAGTAGCATGTTTGCCCTCCTTATAATAT
GGGTACCCCACAGGTGCAGAAGGGAGAATAAACCTGAATATTATTACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61840153|ref|XP_611971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840153|ref|XP_611971.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-443, gnl|bosTau2|chr16 (36125937-36126376)
               

               
               1-443, gnl|Hg17|chrX (118552922-118532520)
               

               
               1-443, gnl|Mm7|chrX (31689912-31672950)
               


               
               469-839, gnl|bosTau2|chrX (1302465-1302102)
               

               
               469-839, gnl|Hg17|chrX (118535848-118535462)
               

               
               469-839, gnl|Mm7|chrX (31676259-31675887)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-443, gnl|bosTau2|chr16 (36125937-36126376)
               

               
               1-443, gnl|Hg17|chrX (118552922-118532520)
               

               
               1-443, gnl|Mm7|chrX (31689912-31672950)
               


               
               469-839, gnl|bosTau2|chrX (1302465-1302102)
               

               
               469-839, gnl|Hg17|chrX (118535848-118535462)
               

               
               469-839, gnl|Mm7|chrX (31676259-31675887)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               med (0.348756)
               

               
               lnt (0.284616)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	1-443, gnl\|bosTau2\|chr16 (36125937-36126376)
	1-443, gnl\|Hg17\|chrX (118552922-118532520)
	1-443, gnl\|Mm7\|chrX (31689912-31672950)

	469-839, gnl\|bosTau2\|chrX (1302465-1302102)
	469-839, gnl\|Hg17\|chrX (118535848-118535462)
	469-839, gnl\|Mm7\|chrX (31676259-31675887)

	med (0.348756)
	lnt (0.284616)
	fcc (0.197785)
	csp (0.161186)
	cag (0.151194)
	pty (0.142714)
	che (0.136314)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	nbm (0.0993246)