Non-Coding RNA Search

Ss1.1-LyN1-MLN01A070102.5

Sequence:


               
               AACAGCCTTCAGAACAAGAGAATGAGGACAGCGTGGCGGAGACCCAAGAGAGCAGTCACC
CAGAAGAACAAGAGACGATGGAAATGATCTCTCAAGACCCAGAATATAAGGAGCCTAAAG
AGAGAGGAAGCAAAAAGGATTATATTCAGGAAAAGCAGAGGAGACAAGAAGAGCAGAAGA
AAAGACATTTAGAAGCTGCTGCGCTGCTGAGTGAAAAAAACGCGGATGGGTGCGTTGATG
AAAGAACACAGGCAGTGTCTCAGTACTCGTGGGCTCTGCTTCAAGCAGATGTGCATTCTC
TGGCTGCTTGTCTGCTTTGGTTGTAGTGGAAGCAGACATGATGATTCTGTCCTGGGTTTT
TAAAGAAAGGAGGCTGCATCTGGCAGAAGTGGGAAATTGATTATGCTGATTTCAGAGTTT
TAGAAGAAAATGAAATTTCTCAAGTAGTGGTGCATCAGCTGGGGCTGTGTTGTCCTGCAC
TGCAGTTGATGTGATACTGGCTGAAGTTGAGGGCTAAGAAAAACCTGACAGGAGAGGTAG
ATTCGGGTATCTGCAAAGCCAGTATTGCAATGTTGGGTTTGTTTCCAGATGATTTTTTTA
ATCAAGAATGTCATTAAGGAGTTCCCATTGTGGCCCAGTGGGTTAAGAACCTAACTAGTT
CAGGTTTCAAGAGGAGGCAGGTTCAATCTCTGGCCCTGGTTGGAGGGTTGGGGATCCAGT
GTTGCGATGAATTGTGGTGTAGGTCACAGACGCAGCTCAGATCCCAAGTGGCTCTAGCTG
CAGCGTAGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCCTTCAGAACAAGAGAATGAGGACAGCGTGGCGGAGACCCAAGAGAGCAGTCACC
CAGAAGAACAAGAGACGATGGAAATGATCTCTCAAGACCCAGAATATAAGGAGCCTAAAG
AGAGAGGAAGCAAAAAGGATTATATTCAGGAAAAGCAGAGGAGACAAGAAGAGCAGAAGA
AAAGACATTTAGAAGCTGCTGCGCTGCTGAGTGAAAAAAACGCGGATGGGTGCGTTGATG
AAAGAACACAGGCAGTGTCTCAGTACTCGTGGGCTCTGCTTCAAGCAGATGTGCATTCTC
TGGCTGCTTGTCTGCTTTGGTTGTAGTGGAAGCAGACATGATGATTCTGTCCTGGGTTTT
TAAAGAAAGGAGGCTGCATCTGGCAGAAGTGGGAAATTGATTATGCTGATTTCAGAGTTT
TAGAAGAAAATGAAATTTCTCAAGTAGTGGTGCATCAGCTGGGGCTGTGTTGTCCTGCAC
TGCAGTTGATGTGATACTGGCTGAAGTTGAGGGCTAAGAAAAACCTGACAGGAGAGGTAG
ATTCGGGTATCTGCAAAGCCAGTATTGCAATGTTGGGTTTGTTTCCAGATGATTTTTTTA
ATCAAGAATGTCATTAAGGAGTTCCCATTGTGGCCCAGTGGGTTAAGAACCTAACTAGTT
CAGGTTTCAAGAGGAGGCAGGTTCAATCTCTGGCCCTGGTTGGAGGGTTGGGGATCCAGT
GTTGCGATGAATTGTGGTGTAGGTCACAGACGCAGCTCAGATCCCAAGTGGCTCTAGCTG
CAGCGTAGGCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               144-302, - strand, RNAz p=0.857962
               

               
               477-596, + strand, RNAz p=0.948543

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-302, - strand, RNAz p=0.857962
               

               
               477-596, + strand, RNAz p=0.948543

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-143, gnl|bosTau2|chr13 (32970669-32970811)
               

               
               1-143, gnl|Hg17|chr20 (5871216-5871074)
               

               
               1-143, gnl|Mm7|chr2 (132549653-132549514)
               


               
               144-617, gnl|bosTau2|chr13 (32971194-32971687)
               

               
               144-617, gnl|Hg17|chr20 (5870682-5870222)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr13 (32970669-32970811)
               

               
               1-143, gnl|Hg17|chr20 (5871216-5871074)
               

               
               1-143, gnl|Mm7|chr2 (132549653-132549514)
               


               
               144-617, gnl|bosTau2|chr13 (32971194-32971687)
               

               
               144-617, gnl|Hg17|chr20 (5870682-5870222)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	144-302, - strand, RNAz p=0.857962
	477-596, + strand, RNAz p=0.948543

	1-143, gnl\|bosTau2\|chr13 (32970669-32970811)
	1-143, gnl\|Hg17\|chr20 (5871216-5871074)
	1-143, gnl\|Mm7\|chr2 (132549653-132549514)

	144-617, gnl\|bosTau2\|chr13 (32971194-32971687)
	144-617, gnl\|Hg17\|chr20 (5870682-5870222)