Ss1.1-LyN1-MLN01A080037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGGTTTTCAAGATGGTGGGTCTCAATGTTCTGGTGTCTGGCTGTGGACGGCTACTCCG AGGGCTCCTGGCAGGCCCGGCCGCGACCAGCTGGGCTCGGCCTCCATCTCGCGGCTTCAG AGAAGTGGTGGAGATCCTAGACGGGAAGACGACTATAATCGAAGGCCGAATCACAGAGAC TCCCCAGGAAAGTCCAAACCCCCCCAACCCCACTGGTCAGTGCCCCATCTGCCGCTGGAA CCTGAAGCACAAGTATAACTACGAGGATGTTCTGCTGCTCAGCCAGTTCATCCGGCCACA CGGGGGCATGCTGCCCCGAAGAATCACAGGCCTGTGCCAGGAGGAGCACCTCAAAATTGA GGAGTGTGTGAAGATGGCCCACCGGGCAGGTCTGCTCCCAAATCACAGGCCGAAGCTTCC TGAAGGATTTGTTCCAAAGAGCAAACCCCGACTCAACAGGTACCTGACCCGCTGGTCTCC CCGCTCTGTCAAGCCCATCTACAACAAAGGCCACCGCTGGAACAAGGTGCGCATGCCCGT GGGGTCCCCCCTCTTGAAGGACAACGTCTCCTACTCGGGCAGGCCCCTGCTGCTGTACCA CTGACTGAGGCAGCTCCGCCCGCACTCCACCCCAGCCCGCCCTACGGCCCCCGGCTCCTC CAGCATTGTCAACGCAAGGGACAGCAGGACCCCCTCCAGGGGCCAGGCAGGGCAGTCGGG TCCCCGGGCAGCTGCCAGGGGCTCAGGCCTGGCCTGGGTTCAGCGCTGACGGGTGGGAGC TTGGCCCAAAGGAATCTTATAAAACAAGGCTCTTACCCTCCCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGGTTTTCAAGATGGTGGGTCTCAATGTTCTGGTGTCTGGCTGTGGACGGCTACTCCG AGGGCTCCTGGCAGGCCCGGCCGCGACCAGCTGGGCTCGGCCTCCATCTCGCGGCTTCAG AGAAGTGGTGGAGATCCTAGACGGGAAGACGACTATAATCGAAGGCCGAATCACAGAGAC TCCCCAGGAAAGTCCAAACCCCCCCAACCCCACTGGTCAGTGCCCCATCTGCCGCTGGAA CCTGAAGCACAAGTATAACTACGAGGATGTTCTGCTGCTCAGCCAGTTCATCCGGCCACA CGGGGGCATGCTGCCCCGAAGAATCACAGGCCTGTGCCAGGAGGAGCACCTCAAAATTGA GGAGTGTGTGAAGATGGCCCACCGGGCAGGTCTGCTCCCAAATCACAGGCCGAAGCTTCC TGAAGGATTTGTTCCAAAGAGCAAACCCCGACTCAACAGGTACCTGACCCGCTGGTCTCC CCGCTCTGTCAAGCCCATCTACAACAAAGGCCACCGCTGGAACAAGGTGCGCATGCCCGT GGGGTCCCCCCTCTTGAAGGACAACGTCTCCTACTCGGGCAGGCCCCTGCTGCTGTACCA CTGACTGAGGCAGCTCCGCCCGCACTCCACCCCAGCCCGCCCTACGGCCCCCGGCTCCTC CAGCATTGTCAACGCAAGGGACAGCAGGACCCCCTCCAGGGGCCAGGCAGGGCAGTCGGG TCCCCGGGCAGCTGCCAGGGGCTCAGGCCTGGCCTGGGTTCAGCGCTGACGGGTGGGAGC TTGGCCCAAAGGAATCTTATAAAACAAGGCTCTTACCCTCCCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 5-125, gnl|bosTau2|chr23 (16144716-16144596) | |
| 5-125, gnl|canFam2|chr12 (15126373-15126466) | |
| 5-125, gnl|echTel1|scaffold_294991 (65652-65586) | |
| 5-125, gnl|hg17|chr6 (43763384-43763477) | |
| 5-125, gnl|Hg17|chr6 (43763504-43763383) | |
| 5-125, gnl|loxAfr1|scaffold_12986 (38733-38823) | |
| 5-125, gnl|mm7|chr17 (44240534-44240441) | |
| 5-125, gnl|Mm7|chr17 (44240413-44240533) | |
| 5-125, gnl|monDom2|scaffold_0 (197812441-197812348) | |
| 5-125, gnl|oryCun1|scaffold_192080 (55034-55127) | |
| 5-125, gnl|panTro1|chr5 (44363268-44363361) | |
| 5-125, gnl|rheMac2|chr4 (43595481-43595574) | |
| 5-125, gnl|rn3|chr9 (10432779-10432872) | |
| 261-391, gnl|bosTau2|chr23 (16131994-16131864) | |
| 261-391, gnl|canFam2|chr12 (15113242-15113362) | |
| 261-391, gnl|canFam2|chr12 (15113234-15113380) | |
| 261-391, gnl|danRer3|chr4 (3495489-3495359) | |
| 261-391, gnl|dasNov1|scaffold_9595 (46436-46316) | |
| 261-391, gnl|dasNov1|scaffold_9595 (46444-46283) | |
| 261-391, gnl|echTel1|scaffold_294991 (66135-66016) | |
| 261-391, gnl|echTel1|scaffold_296401 (4081-3928) | |
| 261-391, gnl|fr1|chrUn (110926067-110926187) | |
| 261-391, gnl|galGal2|chr3 (27094699-27094553) | |
| 261-391, gnl|hg17|chr3 (48273061-48273181) | |
| 261-391, gnl|hg17|chr6 (43751205-43751354) | |
| 261-391, gnl|Hg17|chr6 (43751337-43751207) | |
| 261-391, gnl|loxAfr1|scaffold_12986 (24745-24865) | |
| 261-391, gnl|loxAfr1|scaffold_12986 (24737-24890) | |
| 261-391, gnl|mm7|chr17 (44254815-44254695) | |
| 261-391, gnl|mm7|chr17 (44254822-44254674) | |
| 261-391, gnl|Mm7|chr17 (44254689-44254819) | |
| 261-391, gnl|monDom2|scaffold_0 (197830083-197829929) | |
| 261-391, gnl|oryCun1|scaffold_192080 (40850-40970) | |
| 261-391, gnl|oryCun1|scaffold_192080 (40841-40992) | |
| 261-391, gnl|panTro1|chr2 (49751962-49752082) | |
| 261-391, gnl|panTro1|chr5 (44351022-44351171) | |
| 261-391, gnl|rheMac2|chr2 (88238994-88238874) | |
| 261-391, gnl|rheMac2|chr4 (43583061-43583210) | |
| 261-391, gnl|rn3|chr9 (10419794-10419914) | |
| 261-391, gnl|rn3|chr9 (10419787-10419935) | |
| 261-391, gnl|tetNig1|chr14 (6227529-6227409) | |
| 261-391, gnl|tetNig1|chr14 (6227534-6227384) | |
| 261-391, gnl|xenTro1|scaffold_7513 (2591-2747) | |
| 456-620, gnl|bosTau2|chr23 (16128821-16128656) | |
| 456-620, gnl|canFam2|chr12 (15109810-15110019) | |
| 456-620, gnl|dasNov1|scaffold_9595 (50027-49740) | |
| 456-620, gnl|echTel1|scaffold_294991 (66453-66210) | |
| 456-620, gnl|hg17|chr3 (48272667-48272986) | |
| 456-620, gnl|Hg17|chr6 (43747625-43747460) | |
| 456-620, gnl|loxAfr1|scaffold_12986 (21158-21453) | |
| 456-620, gnl|mm7|chr17 (44258177-44257911) | |
| 456-620, gnl|Mm7|chr17 (44257905-44258069) | |
| 456-620, gnl|oryCun1|scaffold_211361 (61309-61555) | |
| 456-620, gnl|panTro1|chr2 (49751568-49751887) | |
| 456-620, gnl|rheMac2|chr2 (88239383-88239069) | |
| 456-620, gnl|rn3|chr9 (10416500-10416775) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-125, gnl|bosTau2|chr23 (16144716-16144596) | |
| 5-125, gnl|canFam2|chr12 (15126373-15126466) | |
| 5-125, gnl|echTel1|scaffold_294991 (65652-65586) | |
| 5-125, gnl|hg17|chr6 (43763384-43763477) | |
| 5-125, gnl|Hg17|chr6 (43763504-43763383) | |
| 5-125, gnl|loxAfr1|scaffold_12986 (38733-38823) | |
| 5-125, gnl|mm7|chr17 (44240534-44240441) | |
| 5-125, gnl|Mm7|chr17 (44240413-44240533) | |
| 5-125, gnl|monDom2|scaffold_0 (197812441-197812348) | |
| 5-125, gnl|oryCun1|scaffold_192080 (55034-55127) | |
| 5-125, gnl|panTro1|chr5 (44363268-44363361) | |
| 5-125, gnl|rheMac2|chr4 (43595481-43595574) | |
| 5-125, gnl|rn3|chr9 (10432779-10432872) | |
| 261-391, gnl|bosTau2|chr23 (16131994-16131864) | |
| 261-391, gnl|canFam2|chr12 (15113242-15113362) | |
| 261-391, gnl|canFam2|chr12 (15113234-15113380) | |
| 261-391, gnl|danRer3|chr4 (3495489-3495359) | |
| 261-391, gnl|dasNov1|scaffold_9595 (46436-46316) | |
| 261-391, gnl|dasNov1|scaffold_9595 (46444-46283) | |
| 261-391, gnl|echTel1|scaffold_294991 (66135-66016) | |
| 261-391, gnl|echTel1|scaffold_296401 (4081-3928) | |
| 261-391, gnl|fr1|chrUn (110926067-110926187) | |
| 261-391, gnl|galGal2|chr3 (27094699-27094553) | |
| 261-391, gnl|hg17|chr3 (48273061-48273181) | |
| 261-391, gnl|hg17|chr6 (43751205-43751354) | |
| 261-391, gnl|Hg17|chr6 (43751337-43751207) | |
| 261-391, gnl|loxAfr1|scaffold_12986 (24745-24865) | |
| 261-391, gnl|loxAfr1|scaffold_12986 (24737-24890) | |
| 261-391, gnl|mm7|chr17 (44254815-44254695) | |
| 261-391, gnl|mm7|chr17 (44254822-44254674) | |
| 261-391, gnl|Mm7|chr17 (44254689-44254819) | |
| 261-391, gnl|monDom2|scaffold_0 (197830083-197829929) | |
| 261-391, gnl|oryCun1|scaffold_192080 (40850-40970) | |
| 261-391, gnl|oryCun1|scaffold_192080 (40841-40992) | |
| 261-391, gnl|panTro1|chr2 (49751962-49752082) | |
| 261-391, gnl|panTro1|chr5 (44351022-44351171) | |
| 261-391, gnl|rheMac2|chr2 (88238994-88238874) | |
| 261-391, gnl|rheMac2|chr4 (43583061-43583210) | |
| 261-391, gnl|rn3|chr9 (10419794-10419914) | |
| 261-391, gnl|rn3|chr9 (10419787-10419935) | |
| 261-391, gnl|tetNig1|chr14 (6227529-6227409) | |
| 261-391, gnl|tetNig1|chr14 (6227534-6227384) | |
| 261-391, gnl|xenTro1|scaffold_7513 (2591-2747) | |
| 456-620, gnl|bosTau2|chr23 (16128821-16128656) | |
| 456-620, gnl|canFam2|chr12 (15109810-15110019) | |
| 456-620, gnl|dasNov1|scaffold_9595 (50027-49740) | |
| 456-620, gnl|echTel1|scaffold_294991 (66453-66210) | |
| 456-620, gnl|hg17|chr3 (48272667-48272986) | |
| 456-620, gnl|Hg17|chr6 (43747625-43747460) | |
| 456-620, gnl|loxAfr1|scaffold_12986 (21158-21453) | |
| 456-620, gnl|mm7|chr17 (44258177-44257911) | |
| 456-620, gnl|Mm7|chr17 (44257905-44258069) | |
| 456-620, gnl|oryCun1|scaffold_211361 (61309-61555) | |
| 456-620, gnl|panTro1|chr2 (49751568-49751887) | |
| 456-620, gnl|rheMac2|chr2 (88239383-88239069) | |
| 456-620, gnl|rn3|chr9 (10416500-10416775) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| nep (0.36785) | |
| cag (0.302389) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| cov (0.264306) | |
| fli (0.202881) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| cag (0.302389) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| cov (0.264306) | |
| fli (0.202881) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |