Ss1.1-LyN1-MLN01A080061.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTCTCTGGGTTCTGTCAGTGTCGGCGGTGCCCAGCTCACCGGTCCCCTCCCCCTTCT GGCGAGCGTGGTCGCAAGAGAGGCTCTCTCAACCCTGCTCTGCCGGGTCCTCAGTGGGGC GCGCGTGTCCGGCGGCGGCAAACCCGTGGGCAGTGGGGGTTGGTCCCGTGGCTCCGGCCC CCGGTGCAGAATGGCGGCGGCGGTTCGGATGAACATCCAGATGCTGCTGGAGGCGGCGGA CTACTTGGAGCGGCGGGAGAGAGAAGCTGAACATGGTTATGCCTCCATGTTACCATACAA TAACAAGGACAGAGATGCCTTAAAACGGAGGAGCAAATCCAAGAAGAACAACAGCAGTAG CAGATTAACTCACAATGAAATGGAGAAGAATAGACGGGCCCACCTTCGCTTGTGCCTGGA AAAATTGAAGGGGCTGGTGCCACTTGGTCCAGAATCAAATCGACACACCACGTTGAGTTT ATTAACAAAAGCCAAATTGCACATAAAGAAACTTGAAGATTGTGACAGGAGAGCCATTCA TCAGATAGACCAGCTTCAGCGAGAGCAGCGACACCTGAAGAGGCAGCTGGAGAAGCTGGG CATTGAGAGGATACGGATGGACAGCACGGGCTCCACCGCCTCCTCCGAGCGCTCGGACTC CGACAGGGAAGAGATCGACGTGGACGTTGAAAGCACAGACTATCTCACGGGCGACCTGGA CTGGAGCAGCAGCAGCGTGAGCGACTCGGACGAGCGGGGAAGCATGCAGAGCCTGGGCAG CGACGAGGGCTACTCCAGCTCCAGCATCCAGAGAATAAAGCTCCAGGACAATCACCAGAC GTGTCTCGGTCTCTAAGAGCGAAGTTGCTTCGGCTGCCCCGACGGCTTCCCCGCAGCTCT GACTAGGTAGTGTATGGGACCTGCCCACAGTCCCCTCGCCCGGCAGCGTCAGTGTACACC GTCACCAAAATCAGCTGTGTAAAAGTTTTCAACCAAGTGCTTAGGATTGTGGGGTTCCCT CCCCCGCCCCCTTTGTTCTTTTGTTTTAATCCTGGATCCTCATCATAAACGGGTTCCCTG CGCCTGCCAGCGTCGGGCGGGCACACGCTGAGCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTCTCTGGGTTCTGTCAGTGTCGGCGGTGCCCAGCTCACCGGTCCCCTCCCCCTTCT GGCGAGCGTGGTCGCAAGAGAGGCTCTCTCAACCCTGCTCTGCCGGGTCCTCAGTGGGGC GCGCGTGTCCGGCGGCGGCAAACCCGTGGGCAGTGGGGGTTGGTCCCGTGGCTCCGGCCC CCGGTGCAGAATGGCGGCGGCGGTTCGGATGAACATCCAGATGCTGCTGGAGGCGGCGGA CTACTTGGAGCGGCGGGAGAGAGAAGCTGAACATGGTTATGCCTCCATGTTACCATACAA TAACAAGGACAGAGATGCCTTAAAACGGAGGAGCAAATCCAAGAAGAACAACAGCAGTAG CAGATTAACTCACAATGAAATGGAGAAGAATAGACGGGCCCACCTTCGCTTGTGCCTGGA AAAATTGAAGGGGCTGGTGCCACTTGGTCCAGAATCAAATCGACACACCACGTTGAGTTT ATTAACAAAAGCCAAATTGCACATAAAGAAACTTGAAGATTGTGACAGGAGAGCCATTCA TCAGATAGACCAGCTTCAGCGAGAGCAGCGACACCTGAAGAGGCAGCTGGAGAAGCTGGG CATTGAGAGGATACGGATGGACAGCACGGGCTCCACCGCCTCCTCCGAGCGCTCGGACTC CGACAGGGAAGAGATCGACGTGGACGTTGAAAGCACAGACTATCTCACGGGCGACCTGGA CTGGAGCAGCAGCAGCGTGAGCGACTCGGACGAGCGGGGAAGCATGCAGAGCCTGGGCAG CGACGAGGGCTACTCCAGCTCCAGCATCCAGAGAATAAAGCTCCAGGACAATCACCAGAC GTGTCTCGGTCTCTAAGAGCGAAGTTGCTTCGGCTGCCCCGACGGCTTCCCCGCAGCTCT GACTAGGTAGTGTATGGGACCTGCCCACAGTCCCCTCGCCCGGCAGCGTCAGTGTACACC GTCACCAAAATCAGCTGTGTAAAAGTTTTCAACCAAGTGCTTAGGATTGTGGGGTTCCCT CCCCCGCCCCCTTTGTTCTTTTGTTTTAATCCTGGATCCTCATCATAAACGGGTTCCCTG CGCCTGCCAGCGTCGGGCGGGCACACGCTGAGCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 159-263, - strand, RNAz p=0.822188 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 159-263, - strand, RNAz p=0.822188 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-263, gnl|bosTau2|chr11 (48379695-48379425) | |
| 1-263, gnl|canFam2|chr10 (71706255-71706762) | |
| 1-263, gnl|echTel1|scaffold_308291 (15836-16367) | |
| 1-263, gnl|hg17|chr2 (70053589-70054152) | |
| 1-263, gnl|Hg17|chr2 (70053893-70054186) | |
| 1-263, gnl|mm7|chr6 (86744504-86744058) | |
| 1-263, gnl|monDom2|scaffold_1 (93281455-93282001) | |
| 1-263, gnl|panTro1|chr12 (72303061-72303612) | |
| 1-263, gnl|rheMac2|chr13 (70170381-70170921) | |
| 1-263, gnl|rn3|chr4 (121067104-121066658) | |
| 391-508, gnl|bosTau2|chr11 (48360663-48360546) | |
| 391-508, gnl|canFam2|chr10 (71725001-71725159) | |
| 391-508, gnl|danRer3|chr22 (44568736-44568599) | |
| 391-508, gnl|dasNov1|scaffold_122747 (3682-3530) | |
| 391-508, gnl|echTel1|scaffold_231146 (8313-8156) | |
| 391-508, gnl|fr1|chrUn (108031814-108031985) | |
| 391-508, gnl|galGal2|chrUn (141328632-141328491) | |
| 391-508, gnl|hg17|chr2 (70074096-70074255) | |
| 391-508, gnl|Hg17|chr2 (70074131-70074248) | |
| 391-508, gnl|loxAfr1|scaffold_46113 (9172-9302) | |
| 391-508, gnl|mm7|chr6 (86728325-86728166) | |
| 391-508, gnl|Mm7|chr6 (86728288-86728171) | |
| 391-508, gnl|monDom2|scaffold_1 (93303926-93304086) | |
| 391-508, gnl|oryCun1|scaffold_210821 (69706-69547) | |
| 391-508, gnl|panTro1|chr12 (72339111-72339270) | |
| 391-508, gnl|rheMac2|chr13 (70190877-70191035) | |
| 391-508, gnl|rn3|chr4 (121050597-121050438) | |
| 391-508, gnl|tetNig1|chr12 (11372256-11372387) | |
| 391-508, gnl|xenTro1|scaffold_110 (1794625-1794473) | |
| 668-1017, gnl|bosTau2|chr11 (48358481-48358120) | |
| 668-1017, gnl|Hg17|chr2 (70076879-70077234) | |
| 668-1017, gnl|Mm7|chr6 (86726166-86725826) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-263, gnl|bosTau2|chr11 (48379695-48379425) | |
| 1-263, gnl|canFam2|chr10 (71706255-71706762) | |
| 1-263, gnl|echTel1|scaffold_308291 (15836-16367) | |
| 1-263, gnl|hg17|chr2 (70053589-70054152) | |
| 1-263, gnl|Hg17|chr2 (70053893-70054186) | |
| 1-263, gnl|mm7|chr6 (86744504-86744058) | |
| 1-263, gnl|monDom2|scaffold_1 (93281455-93282001) | |
| 1-263, gnl|panTro1|chr12 (72303061-72303612) | |
| 1-263, gnl|rheMac2|chr13 (70170381-70170921) | |
| 1-263, gnl|rn3|chr4 (121067104-121066658) | |
| 391-508, gnl|bosTau2|chr11 (48360663-48360546) | |
| 391-508, gnl|canFam2|chr10 (71725001-71725159) | |
| 391-508, gnl|danRer3|chr22 (44568736-44568599) | |
| 391-508, gnl|dasNov1|scaffold_122747 (3682-3530) | |
| 391-508, gnl|echTel1|scaffold_231146 (8313-8156) | |
| 391-508, gnl|fr1|chrUn (108031814-108031985) | |
| 391-508, gnl|galGal2|chrUn (141328632-141328491) | |
| 391-508, gnl|hg17|chr2 (70074096-70074255) | |
| 391-508, gnl|Hg17|chr2 (70074131-70074248) | |
| 391-508, gnl|loxAfr1|scaffold_46113 (9172-9302) | |
| 391-508, gnl|mm7|chr6 (86728325-86728166) | |
| 391-508, gnl|Mm7|chr6 (86728288-86728171) | |
| 391-508, gnl|monDom2|scaffold_1 (93303926-93304086) | |
| 391-508, gnl|oryCun1|scaffold_210821 (69706-69547) | |
| 391-508, gnl|panTro1|chr12 (72339111-72339270) | |
| 391-508, gnl|rheMac2|chr13 (70190877-70191035) | |
| 391-508, gnl|rn3|chr4 (121050597-121050438) | |
| 391-508, gnl|tetNig1|chr12 (11372256-11372387) | |
| 391-508, gnl|xenTro1|scaffold_110 (1794625-1794473) | |
| 668-1017, gnl|bosTau2|chr11 (48358481-48358120) | |
| 668-1017, gnl|Hg17|chr2 (70076879-70077234) | |
| 668-1017, gnl|Mm7|chr6 (86726166-86725826) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| ton (0.1755) |