Non-Coding RNA Search

Ss1.1-LyN1-MLN01A080069.5

Sequence:


               
               CACGGCTTGGGTAGTGTTCGCCTCGGCGAAGGGCCGGACTCGGAGCTCGAGACCCCAGCG
AGCGGACGCTGTCCCGGTGCCTCGCAGAACCAGCGCGCTCACCATGGCGATGCATTTCAT
CTTCTCGGATCAGGCAGTGCTGCTCTTTGATTTCTGGAGTGTCCACAGTCCTGCAGGCAT
GGCCATTTCGGTGTTGGTGGTCCTGCTCCTGGCTGTGTTGTATGAAAGCCTCAAGGTTGG
CAAAGCCAGGCTGCTCCTCCAGGCCCTGATGAGCCTGTCCACACCCACCAGGCAGCAGCT
CATCGAAGAGACAGACCAGGATTCAAGTTCAGACTCACTCCCAGACAGCAGGACCCATCT
CAGGTGGTTCATGTGTCACTTTGGCCAGTCTTTACTCCACGTCGCTCAGGTGGTCATTGG
CTACTTCATGATGCTGGCTGTGATGTCCTACAACACGTGGATTTTCTTTGGCGTGGTCCT
GGGCTCAGGTGTGGGCTACTACCTGGCCTACCCACTTCTCAACATGACTTAGCTCGTGAG
GGCTGTGCAGGAACTAAGGGCTGGAGAGAGCAGGGGCCCCTTCCCCAAACATTTATCTTC
CAGCCTCATGTCTTCTGTCTCTTCTGCTGGCTAGTCTCACACCATTCTCAGCTCCTGAAA
ACTTTCAGCTGAAGCCAGCGCATGCTCCCTGGAGTTCAGAGGCCATTGCGGCTCCTCAGC
CGGCCTGTAGAGAGCTCAGGCATAGTCAGTCTGTGCCTTAAAAAGGCTGCTGTGACCAGA
GGGAGGATGGAGAGACCAGAACCAGGGGGCAGGTTTGCTGAGCCCGTGAGGACTTATCTG
ACTTAAAACTTACGAATTTCCAAAGATCAAGACAGGGAGATGGTTCTGGGTGATGAACCT
GGATATCCTCTGCTCTCCTGATCTGTGCCTTATGCAGAGGAGCACCTTCCACTGGAATTC
CTGACTTCGGCCTCTCGGGGACAGAGATGCGGTGGCTCCTTTTTCTCACCTTTCTGCCCT
GGGACAGGTGAAGATTGTGCCTTCTGTGGATCATGCTGACAAACTGAGATTTCTCATTGT
TCCCACTGAATGCCTGGTTGGCAATTTTGCACATTAATAACAAAACCAAATTTTTACTGA
AATGATTTTATTTTGTTCATGATCATAGCAGCATCTGCTGGGACCTGTTTCCCTTTCTTG
GGGAGAGGAAGTGACAGCAGATTAAAAGCAGAGAAGCAGGACTGTTTTCAAGGCCTTGAC
CTATCTGAACCGAGGGAACTCCTCCCATCAGATGACACTGCCTGCGGGAAGAAGATAGTT
CAATGCCTTCAGGTGTCCGGTAGCTCTTGTGGCCTTAATAACCTCCTTTTATCCTGATCC
TTCTTCTATGCAAGAGCAAGAACTGCACTGAATAACATCTAATACTAATGCTATTTACTA
CCTACTGTTCACACTCATAATCTGGTGGGGAAACATGATTCACTTAAACTACTGAGTAAG
CCACAGGGGGTACCGACTGAAGATGCAATAAGTAATCAAACCAAAGCATTATGTTATAGA
GTTAGATAGGGCTCTTCAGATATTTGAACCTTTTCACTTAAAAAAAAAAAAGGGAAAGAA
GTGGTACTGGGAGAGGAAATCACTGCTGTATACTGTAATGTCTGTACTCAGGTACCTCAC
GGGCCGGATGAAAGGTGGTCTGAAGCTTTGGGAATTGAAAAAGAAAGACGCATTTTAATA
AATATATATTTTTAAATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGGCTTGGGTAGTGTTCGCCTCGGCGAAGGGCCGGACTCGGAGCTCGAGACCCCAGCG
AGCGGACGCTGTCCCGGTGCCTCGCAGAACCAGCGCGCTCACCATGGCGATGCATTTCAT
CTTCTCGGATCAGGCAGTGCTGCTCTTTGATTTCTGGAGTGTCCACAGTCCTGCAGGCAT
GGCCATTTCGGTGTTGGTGGTCCTGCTCCTGGCTGTGTTGTATGAAAGCCTCAAGGTTGG
CAAAGCCAGGCTGCTCCTCCAGGCCCTGATGAGCCTGTCCACACCCACCAGGCAGCAGCT
CATCGAAGAGACAGACCAGGATTCAAGTTCAGACTCACTCCCAGACAGCAGGACCCATCT
CAGGTGGTTCATGTGTCACTTTGGCCAGTCTTTACTCCACGTCGCTCAGGTGGTCATTGG
CTACTTCATGATGCTGGCTGTGATGTCCTACAACACGTGGATTTTCTTTGGCGTGGTCCT
GGGCTCAGGTGTGGGCTACTACCTGGCCTACCCACTTCTCAACATGACTTAGCTCGTGAG
GGCTGTGCAGGAACTAAGGGCTGGAGAGAGCAGGGGCCCCTTCCCCAAACATTTATCTTC
CAGCCTCATGTCTTCTGTCTCTTCTGCTGGCTAGTCTCACACCATTCTCAGCTCCTGAAA
ACTTTCAGCTGAAGCCAGCGCATGCTCCCTGGAGTTCAGAGGCCATTGCGGCTCCTCAGC
CGGCCTGTAGAGAGCTCAGGCATAGTCAGTCTGTGCCTTAAAAAGGCTGCTGTGACCAGA
GGGAGGATGGAGAGACCAGAACCAGGGGGCAGGTTTGCTGAGCCCGTGAGGACTTATCTG
ACTTAAAACTTACGAATTTCCAAAGATCAAGACAGGGAGATGGTTCTGGGTGATGAACCT
GGATATCCTCTGCTCTCCTGATCTGTGCCTTATGCAGAGGAGCACCTTCCACTGGAATTC
CTGACTTCGGCCTCTCGGGGACAGAGATGCGGTGGCTCCTTTTTCTCACCTTTCTGCCCT
GGGACAGGTGAAGATTGTGCCTTCTGTGGATCATGCTGACAAACTGAGATTTCTCATTGT
TCCCACTGAATGCCTGGTTGGCAATTTTGCACATTAATAACAAAACCAAATTTTTACTGA
AATGATTTTATTTTGTTCATGATCATAGCAGCATCTGCTGGGACCTGTTTCCCTTTCTTG
GGGAGAGGAAGTGACAGCAGATTAAAAGCAGAGAAGCAGGACTGTTTTCAAGGCCTTGAC
CTATCTGAACCGAGGGAACTCCTCCCATCAGATGACACTGCCTGCGGGAAGAAGATAGTT
CAATGCCTTCAGGTGTCCGGTAGCTCTTGTGGCCTTAATAACCTCCTTTTATCCTGATCC
TTCTTCTATGCAAGAGCAAGAACTGCACTGAATAACATCTAATACTAATGCTATTTACTA
CCTACTGTTCACACTCATAATCTGGTGGGGAAACATGATTCACTTAAACTACTGAGTAAG
CCACAGGGGGTACCGACTGAAGATGCAATAAGTAATCAAACCAAAGCATTATGTTATAGA
GTTAGATAGGGCTCTTCAGATATTTGAACCTTTTCACTTAAAAAAAAAAAAGGGAAAGAA
GTGGTACTGGGAGAGGAAATCACTGCTGTATACTGTAATGTCTGTACTCAGGTACCTCAC
GGGCCGGATGAAAGGTGGTCTGAAGCTTTGGGAATTGAAAAAGAAAGACGCATTTTAATA
AATATATATTTTTAAATAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53X94_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53X94_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               395-514, - strand, RNAz p=0.74365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-514, - strand, RNAz p=0.74365

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               356-816, gnl|bosTau2|chr8 (53101534-53101077)
               

               
               356-816, gnl|Hg17|chr9 (113004576-113005011)
               

               
               356-816, gnl|Mm7|chr4 (61730664-61731111)
               


               
               1156-1758, gnl|bosTau2|chr8 (53101078-53100476)
               

               
               1156-1758, gnl|Hg17|chr9 (113005397-113005971)
               

               
               1156-1758, gnl|Mm7|chr4 (61731402-61732104)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-816, gnl|bosTau2|chr8 (53101534-53101077)
               

               
               356-816, gnl|Hg17|chr9 (113004576-113005011)
               

               
               356-816, gnl|Mm7|chr4 (61730664-61731111)
               


               
               1156-1758, gnl|bosTau2|chr8 (53101078-53100476)
               

               
               1156-1758, gnl|Hg17|chr9 (113005397-113005971)
               

               
               1156-1758, gnl|Mm7|chr4 (61731402-61732104)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               lyg (1.06482)
               

               
               sag (0.730861)
               

               
               pan (0.471921)
               

               
               spl (0.429553)
               

               
               cki (0.330469)
               

               
               nmm (0.265604)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.06482)
               

               
               sag (0.730861)
               

               
               pan (0.471921)
               

               
               spl (0.429553)
               

               
               cki (0.330469)
               

               
               nmm (0.265604)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	356-816, gnl\|bosTau2\|chr8 (53101534-53101077)
	356-816, gnl\|Hg17\|chr9 (113004576-113005011)
	356-816, gnl\|Mm7\|chr4 (61730664-61731111)

	1156-1758, gnl\|bosTau2\|chr8 (53101078-53100476)
	1156-1758, gnl\|Hg17\|chr9 (113005397-113005971)
	1156-1758, gnl\|Mm7\|chr4 (61731402-61732104)

	lyg (1.06482)
	sag (0.730861)
	pan (0.471921)
	spl (0.429553)
	cki (0.330469)
	nmm (0.265604)
	cmu (0.186393)
	cut (0.169924)
	fat (0.147427)
	pty (0.142714)
	csk (0.140746)
	kid (0.129735)
	bla (0.124347)
	ldo (0.0970026)