Ss1.1-LyN1-MLN01A080071.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGGATTAGAAGGGGAACGAAAGATGGCGGCGGAGACGCTGCTGTCCAGTCTGTTGGGG CTACTGCTTCTGGGGCTCCTGTTACCCGCAAATCTGACCGGCGGTGTCGGGAGCCTGAAC CTGGAAGAGCTGAGTGAGATGCGTTATGGGATCGAAATACTGCCGTTGCCTGTCATGGGA GGGCAGAACCAAGCTTCGGACGTGGTGATTGTCTCCTCTAAGTACAAGCAGCGCTATGAA TGTCGCCTTCCAGCTGGAGCTATTCACTTCCAGCGTGAAAGGGAGGAGGAGGCACCTGCT TATCAAGGGCCTGGGATCCCTGAGTTGTTGAGCCCAATGAAAGATGCTCCCTGCCTGCTG AAGACCAAAGACTGGTGGACGTATGAATTTTGTTATGGACGCCACATCCAGCAGTACCAC ATGGAAGATTCAGAGATCAAAGGTGAAGTCCTCTATCTTGGCTACTACCAATCGGCCTTC GACTGGGATGATGAAACAGCTAAGGCCTCCAAGCAGCATCGCCTGAAACGCTACCACAGC CAGACTTATGGCAATGGGTCTAAGTGCGACCTCAACGGGAGGCCCCGGGAAGCTGAGGTT CGGTTCCTCTGTGACGAGGGTGCTGGTATTTCTGGTGACTACATTGACCGTGTGGATGAG CCCTTGTCCTGCTCTTACGTGCTGACCATTCGGACTTCTCGGCTCTGCCCTCACCCTCTC CTCCGGCCCCCACCCAGTACTGCTCCCCAGGCCATTCTCTGTCACCCTGCCCTGCAGCCT GAGGAGTACATGGCCTACATCCAGAGGCAAGCTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGGATTAGAAGGGGAACGAAAGATGGCGGCGGAGACGCTGCTGTCCAGTCTGTTGGGG CTACTGCTTCTGGGGCTCCTGTTACCCGCAAATCTGACCGGCGGTGTCGGGAGCCTGAAC CTGGAAGAGCTGAGTGAGATGCGTTATGGGATCGAAATACTGCCGTTGCCTGTCATGGGA GGGCAGAACCAAGCTTCGGACGTGGTGATTGTCTCCTCTAAGTACAAGCAGCGCTATGAA TGTCGCCTTCCAGCTGGAGCTATTCACTTCCAGCGTGAAAGGGAGGAGGAGGCACCTGCT TATCAAGGGCCTGGGATCCCTGAGTTGTTGAGCCCAATGAAAGATGCTCCCTGCCTGCTG AAGACCAAAGACTGGTGGACGTATGAATTTTGTTATGGACGCCACATCCAGCAGTACCAC ATGGAAGATTCAGAGATCAAAGGTGAAGTCCTCTATCTTGGCTACTACCAATCGGCCTTC GACTGGGATGATGAAACAGCTAAGGCCTCCAAGCAGCATCGCCTGAAACGCTACCACAGC CAGACTTATGGCAATGGGTCTAAGTGCGACCTCAACGGGAGGCCCCGGGAAGCTGAGGTT CGGTTCCTCTGTGACGAGGGTGCTGGTATTTCTGGTGACTACATTGACCGTGTGGATGAG CCCTTGTCCTGCTCTTACGTGCTGACCATTCGGACTTCTCGGCTCTGCCCTCACCCTCTC CTCCGGCCCCCACCCAGTACTGCTCCCCAGGCCATTCTCTGTCACCCTGCCCTGCAGCCT GAGGAGTACATGGCCTACATCCAGAGGCAAGCTGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 503-599, - strand, RNAz p=0.862113 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 503-599, - strand, RNAz p=0.862113 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 184-370, gnl|bosTau2|chr2 (14106535-14106721) | |
| 184-370, gnl|canFam2|chr10 (4740635-4740824) | |
| 184-370, gnl|danRer3|chr6 (21731986-21732177) | |
| 184-370, gnl|dasNov1|scaffold_41027 (234-423) | |
| 184-370, gnl|echTel1|scaffold_319337 (20395-20584) | |
| 184-370, gnl|fr1|chrUn (40869307-40869112) | |
| 184-370, gnl|hg17|chr12 (56374790-56374979) | |
| 184-370, gnl|Hg17|chr12 (56374797-56374983) | |
| 184-370, gnl|loxAfr1|scaffold_36047 (7402-7591) | |
| 184-370, gnl|mm7|chr10 (126618035-126617846) | |
| 184-370, gnl|Mm7|chr10 (126618026-126617840) | |
| 184-370, gnl|monDom2|scaffold_283 (82576-82765) | |
| 184-370, gnl|panTro1|chr10 (57618740-57618929) | |
| 184-370, gnl|rheMac2|chr11 (54781701-54781890) | |
| 184-370, gnl|rn3|chr7 (67093495-67093306) | |
| 184-370, gnl|tetNig1|chr11 (6551613-6551808) | |
| 503-603, gnl|bosTau2|chr2 (14108036-14108136) | |
| 503-603, gnl|canFam2|chr10 (4742072-4742223) | |
| 503-603, gnl|danRer3|chr6 (21734587-21734747) | |
| 503-603, gnl|dasNov1|scaffold_41027 (1723-1872) | |
| 503-603, gnl|echTel1|scaffold_319337 (21794-21947) | |
| 503-603, gnl|fr1|chrUn (40868694-40868539) | |
| 503-603, gnl|hg17|chr12 (56376287-56376436) | |
| 503-603, gnl|Hg17|chr12 (56376323-56376423) | |
| 503-603, gnl|loxAfr1|scaffold_36047 (8959-9109) | |
| 503-603, gnl|mm7|chr10 (126616716-126616567) | |
| 503-603, gnl|Mm7|chr10 (126616677-126616577) | |
| 503-603, gnl|monDom2|scaffold_283 (84178-84331) | |
| 503-603, gnl|oryCun1|scaffold_203151 (1070-1218) | |
| 503-603, gnl|panTro1|chr10 (57620237-57620386) | |
| 503-603, gnl|rheMac2|chr11 (54783528-54783677) | |
| 503-603, gnl|rn3|chr7 (67092204-67092059) | |
| 503-603, gnl|tetNig1|chr11 (6552419-6552545) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-370, gnl|bosTau2|chr2 (14106535-14106721) | |
| 184-370, gnl|canFam2|chr10 (4740635-4740824) | |
| 184-370, gnl|danRer3|chr6 (21731986-21732177) | |
| 184-370, gnl|dasNov1|scaffold_41027 (234-423) | |
| 184-370, gnl|echTel1|scaffold_319337 (20395-20584) | |
| 184-370, gnl|fr1|chrUn (40869307-40869112) | |
| 184-370, gnl|hg17|chr12 (56374790-56374979) | |
| 184-370, gnl|Hg17|chr12 (56374797-56374983) | |
| 184-370, gnl|loxAfr1|scaffold_36047 (7402-7591) | |
| 184-370, gnl|mm7|chr10 (126618035-126617846) | |
| 184-370, gnl|Mm7|chr10 (126618026-126617840) | |
| 184-370, gnl|monDom2|scaffold_283 (82576-82765) | |
| 184-370, gnl|panTro1|chr10 (57618740-57618929) | |
| 184-370, gnl|rheMac2|chr11 (54781701-54781890) | |
| 184-370, gnl|rn3|chr7 (67093495-67093306) | |
| 184-370, gnl|tetNig1|chr11 (6551613-6551808) | |
| 503-603, gnl|bosTau2|chr2 (14108036-14108136) | |
| 503-603, gnl|canFam2|chr10 (4742072-4742223) | |
| 503-603, gnl|danRer3|chr6 (21734587-21734747) | |
| 503-603, gnl|dasNov1|scaffold_41027 (1723-1872) | |
| 503-603, gnl|echTel1|scaffold_319337 (21794-21947) | |
| 503-603, gnl|fr1|chrUn (40868694-40868539) | |
| 503-603, gnl|hg17|chr12 (56376287-56376436) | |
| 503-603, gnl|Hg17|chr12 (56376323-56376423) | |
| 503-603, gnl|loxAfr1|scaffold_36047 (8959-9109) | |
| 503-603, gnl|mm7|chr10 (126616716-126616567) | |
| 503-603, gnl|Mm7|chr10 (126616677-126616577) | |
| 503-603, gnl|monDom2|scaffold_283 (84178-84331) | |
| 503-603, gnl|oryCun1|scaffold_203151 (1070-1218) | |
| 503-603, gnl|panTro1|chr10 (57620237-57620386) | |
| 503-603, gnl|rheMac2|chr11 (54783528-54783677) | |
| 503-603, gnl|rn3|chr7 (67092204-67092059) | |
| 503-603, gnl|tetNig1|chr11 (6552419-6552545) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| cty (0.10408) |