Non-Coding RNA Search

Ss1.1-LyN1-MLN01A090037.5

Sequence:


               
               CGCCAGCAGATCCAGCGGCGTGCGGACAAGGGGCCAGATCGCGCCCGCGAGATGGCGGCG
GCGGCCGTGAGCGGCGCTAAGCGGAGCCTGCGGGCCGAGCTGAAGCAGCGTCTGCGGGCG
GTGAGCGCCGAGGAGCGGCTGCGCCAGTCCCGCCTCTTAACCCAGAAGGTGATTGCCCAC
AGTCAGTATCTAAAATCCAAAAGAATTTCCATCTTTCTGAGCATGCCAGATGAAATCGAG
ACGGAAGAGATCATCAGGGACATTTTCCAACAAGGCAAGACCTGTTTTATCCCACGGTAT
CAGTTCCAGAGCAATCACATGGATATGGTGAAATTAGCATCGCCCGAGGAAATTTCTTCC
CTTCCCAAAACATCCTGGAATATTCATCAGCCCGGGGAGAATGAGATTCGAGAGGAGGCC
TTGTCAACAGGGGGACTTGATCTCATCTTCATGCCTGGTCTTGGGTTTGACAACTGTGGC
AACCGTCTGGGGCGGGGCAAGGGCTACTACGACACCTACCTGAAGCGCTGTCTGCAGTCC
CAGGATGTGAAGCCCTACACCCTGGCCTTGGCTTTCAAAGAACAGATTTGCCTCCAGGTC
CCCATGGATGAACATGACATGAAGGTAGATGAAGTCCTTTATGAAGACTCCCCAGCATCC
TAAGTCCTGATGACTACAGCTCCCCCAAAATCAATGTTCTGTACCAGAGAAAAGCAGAAT
CTGTGTATTTTCCTTTATCAGAAATTAGTAGAAATAGGGACTATATTGCGTTTAGTGTAA
TTATAAGATACCTAACATGAAGCCATTTTAAAAAACCAATAGCAGTGTGAGTAATAGAAC
CTCAATTAAAATGGAGCCTATCACCATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCAGCAGATCCAGCGGCGTGCGGACAAGGGGCCAGATCGCGCCCGCGAGATGGCGGCG
GCGGCCGTGAGCGGCGCTAAGCGGAGCCTGCGGGCCGAGCTGAAGCAGCGTCTGCGGGCG
GTGAGCGCCGAGGAGCGGCTGCGCCAGTCCCGCCTCTTAACCCAGAAGGTGATTGCCCAC
AGTCAGTATCTAAAATCCAAAAGAATTTCCATCTTTCTGAGCATGCCAGATGAAATCGAG
ACGGAAGAGATCATCAGGGACATTTTCCAACAAGGCAAGACCTGTTTTATCCCACGGTAT
CAGTTCCAGAGCAATCACATGGATATGGTGAAATTAGCATCGCCCGAGGAAATTTCTTCC
CTTCCCAAAACATCCTGGAATATTCATCAGCCCGGGGAGAATGAGATTCGAGAGGAGGCC
TTGTCAACAGGGGGACTTGATCTCATCTTCATGCCTGGTCTTGGGTTTGACAACTGTGGC
AACCGTCTGGGGCGGGGCAAGGGCTACTACGACACCTACCTGAAGCGCTGTCTGCAGTCC
CAGGATGTGAAGCCCTACACCCTGGCCTTGGCTTTCAAAGAACAGATTTGCCTCCAGGTC
CCCATGGATGAACATGACATGAAGGTAGATGAAGTCCTTTATGAAGACTCCCCAGCATCC
TAAGTCCTGATGACTACAGCTCCCCCAAAATCAATGTTCTGTACCAGAGAAAAGCAGAAT
CTGTGTATTTTCCTTTATCAGAAATTAGTAGAAATAGGGACTATATTGCGTTTAGTGTAA
TTATAAGATACCTAACATGAAGCCATTTTAAAAAACCAATAGCAGTGTGAGTAATAGAAC
CTCAATTAAAATGGAGCCTATCACCATAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               MTHFS_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MTHFS_HUMAN

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               2-172, gnl|bosTau2|chr21 (22199582-22199753)
               

               
               2-172, gnl|Hg17|chr15 (77976479-77976265)
               

               
               2-172, gnl|Mm7|chr9 (88841148-88841297)
               


               
               301-866, gnl|bosTau2|chr6 (65379969-65379441)
               


               
               420-864, gnl|bosTau2|chr21 (22214968-22215423)
               

               
               420-864, gnl|Hg17|chr15 (77924850-77924392)
               

               
               420-864, gnl|Mm7|chr9 (88869813-88870256)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-172, gnl|bosTau2|chr21 (22199582-22199753)
               

               
               2-172, gnl|Hg17|chr15 (77976479-77976265)
               

               
               2-172, gnl|Mm7|chr9 (88841148-88841297)
               


               
               301-866, gnl|bosTau2|chr6 (65379969-65379441)
               


               
               420-864, gnl|bosTau2|chr21 (22214968-22215423)
               

               
               420-864, gnl|Hg17|chr15 (77924850-77924392)
               

               
               420-864, gnl|Mm7|chr9 (88869813-88870256)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               lnt (0.426925)
               

               
               col (0.390016)
               

               
               sto (0.359648)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               col (0.390016)
               

               
               sto (0.359648)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

	2-172, gnl\|bosTau2\|chr21 (22199582-22199753)
	2-172, gnl\|Hg17\|chr15 (77976479-77976265)
	2-172, gnl\|Mm7\|chr9 (88841148-88841297)

	301-866, gnl\|bosTau2\|chr6 (65379969-65379441)

	420-864, gnl\|bosTau2\|chr21 (22214968-22215423)
	420-864, gnl\|Hg17\|chr15 (77924850-77924392)
	420-864, gnl\|Mm7\|chr9 (88869813-88870256)

	lnt (0.426925)
	col (0.390016)
	sto (0.359648)
	hlv (0.278513)
	med (0.232504)
	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	mcp (0.170648)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	lun (0.150489)
	lin (0.145603)
	cst (0.140036)
	kid (0.129735)
	ese (0.126502)
	pgl (0.118483)