Non-Coding RNA Search

Ss1.1-LyN1-MLN01A090078.5

Sequence:


               
               AAAAAAAATTTTCTCCCATTGCGGGCCATCCTAAATAGGAATATAAACAAAGCTTTGGGA
ACCCACTGAAGGAGAAAGCAGTCAGAGAGGGAAATCAGTTGCCAATGGATAAATAAATAG
CCTGGCCTCAGGGACCAAAGTTCTTATTGACACAGCCTCCCAGTGTTTGCCTGGAAAGTG
AGGGAGAGAGCCACCCACTGCTCACCTCCTTATGCGTGTCACACTTCCTCGTAGTACTGT
TCTTGGCAGTGCAGCAGGTCAGAGCACCCTGCAAGTTTAGGGCAGTTTAGGACAGTGCCA
GAGTTGGTAACTCTTGTGGTTAGGGCAAACCTTGAGCTTCAGCCATCACACACACACACA
CACACAAATGGCTGCATACATGGCATGTGGAAGTTTCTGGGACAGGATTTGAATCTGAGC
CACAGCTGTGGCAATGCTGGATCCTTTAACCCACTGTACCACAGAGGGAACTCCCAGCTG
TATCTTAAGAGGTCACCACAGTCCAGGCTGAGCTCCTGCCCTCCTCATCCTAGGGCCCAT
CCTCCTTGCTCTACTCTGAGAACCCCTGTTGATCATAGCGAGGGCAGTGGGAAGGTTGGG
ACAAGAGAACAAGGATCTAGCCAACCTCTGCCTTTAACTTCTATGTATCATTGATGTTTC
AGCAGTTTCCTTTTCTGTGAGAGGAGTCTTGGAGCCATAAGGTTCCTCTCTAGCTCTGAG
GCTACAACCTTCAGGTGTGCTTCCCTTCCTGTGTTTTTCATTCTATTTGCATTGTTATTT
GCATATGTTTCCACATTATGTGTTAGTACTTTTACCCCTTCAGGCCTGAAATAACCTTCC
TCCAGTTGTCACTAGGTGTAGTAGAAAGAGCACTGGACTGTGGGAGTCAAGACACCTGAA
CTCTGGTTCTGCCACTGCCTGGTTATGTAACCTTGGGCAAGTCACTTAACTTTTCCGCAT
CTGTTTGTTCCTCTGCACGGTGGGGTTGATATTTGTCTTGTCCAGTTTTTATGGGTTGTT
AGGAGGGTCAAATGAGATTGGGTGTGTGAAATTACTGGGGAAAAGGCCAGAATATATTTT
CCTAGGCTTTTAGGACAGATCGACAGATCGACCAATCCTTAAATACCACCTCTGCCATTT
ACTGGCAGTTCCCCTCTTTGAGCCTGTTTCCCCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATTTTCTCCCATTGCGGGCCATCCTAAATAGGAATATAAACAAAGCTTTGGGA
ACCCACTGAAGGAGAAAGCAGTCAGAGAGGGAAATCAGTTGCCAATGGATAAATAAATAG
CCTGGCCTCAGGGACCAAAGTTCTTATTGACACAGCCTCCCAGTGTTTGCCTGGAAAGTG
AGGGAGAGAGCCACCCACTGCTCACCTCCTTATGCGTGTCACACTTCCTCGTAGTACTGT
TCTTGGCAGTGCAGCAGGTCAGAGCACCCTGCAAGTTTAGGGCAGTTTAGGACAGTGCCA
GAGTTGGTAACTCTTGTGGTTAGGGCAAACCTTGAGCTTCAGCCATCACACACACACACA
CACACAAATGGCTGCATACATGGCATGTGGAAGTTTCTGGGACAGGATTTGAATCTGAGC
CACAGCTGTGGCAATGCTGGATCCTTTAACCCACTGTACCACAGAGGGAACTCCCAGCTG
TATCTTAAGAGGTCACCACAGTCCAGGCTGAGCTCCTGCCCTCCTCATCCTAGGGCCCAT
CCTCCTTGCTCTACTCTGAGAACCCCTGTTGATCATAGCGAGGGCAGTGGGAAGGTTGGG
ACAAGAGAACAAGGATCTAGCCAACCTCTGCCTTTAACTTCTATGTATCATTGATGTTTC
AGCAGTTTCCTTTTCTGTGAGAGGAGTCTTGGAGCCATAAGGTTCCTCTCTAGCTCTGAG
GCTACAACCTTCAGGTGTGCTTCCCTTCCTGTGTTTTTCATTCTATTTGCATTGTTATTT
GCATATGTTTCCACATTATGTGTTAGTACTTTTACCCCTTCAGGCCTGAAATAACCTTCC
TCCAGTTGTCACTAGGTGTAGTAGAAAGAGCACTGGACTGTGGGAGTCAAGACACCTGAA
CTCTGGTTCTGCCACTGCCTGGTTATGTAACCTTGGGCAAGTCACTTAACTTTTCCGCAT
CTGTTTGTTCCTCTGCACGGTGGGGTTGATATTTGTCTTGTCCAGTTTTTATGGGTTGTT
AGGAGGGTCAAATGAGATTGGGTGTGTGAAATTACTGGGGAAAAGGCCAGAATATATTTT
CCTAGGCTTTTAGGACAGATCGACAGATCGACCAATCCTTAAATACCACCTCTGCCATTT
ACTGGCAGTTCCCCTCTTTGAGCCTGTTTCCCCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               634-846, - strand, RNAz p=0.999537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               634-846, - strand, RNAz p=0.999537

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               60-343, gnl|bosTau2|chr2 (73583711-73583985)
               

               
               60-343, gnl|Hg17|chr1 (32456524-32456778)
               

               
               60-343, gnl|Mm7|chr4 (128970814-128970426)
               


               
               475-1176, gnl|bosTau2|chr2 (73583982-73584664)
               

               
               475-1176, gnl|Hg17|chr1 (32456775-32458404)
               

               
               475-1176, gnl|Mm7|chr4 (128970429-128969827)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-343, gnl|bosTau2|chr2 (73583711-73583985)
               

               
               60-343, gnl|Hg17|chr1 (32456524-32456778)
               

               
               60-343, gnl|Mm7|chr4 (128970814-128970426)
               


               
               475-1176, gnl|bosTau2|chr2 (73583982-73584664)
               

               
               475-1176, gnl|Hg17|chr1 (32456775-32458404)
               

               
               475-1176, gnl|Mm7|chr4 (128970429-128969827)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	60-343, gnl\|bosTau2\|chr2 (73583711-73583985)
	60-343, gnl\|Hg17\|chr1 (32456524-32456778)
	60-343, gnl\|Mm7\|chr4 (128970814-128970426)

	475-1176, gnl\|bosTau2\|chr2 (73583982-73584664)
	475-1176, gnl\|Hg17\|chr1 (32456775-32458404)
	475-1176, gnl\|Mm7\|chr4 (128970429-128969827)